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At least 469 records · Page 26

Facilitating Ionic and Electronic Conduction in Radical Polymers through Controlled Assembly

The major objectives, research performed, and significant results associated with this effort agree with the originally proposed work. That is, we have made significant advances in terms of both the experimental and computational thrusts of this effort, and these key results have allowed for us to have significant impact in the materials chemistry community. As is usual, this has led to even greater tangible product generation in the final year of the work relative to the first two years. Importantly, we have observed that the materials created under this effort have promising electronic and ionic conductivity properties along these lines, and we have developed the initial structure-property-performance relationships that offer future promise for these open-shell materials in advanced energy applications. One metric that represents this success is the number of publications that appear in notable journals regarding the work performed. Additionally, the team has been invited to present at many conferences of leading societies and at top academic institutions due to the work associated with this award. Finally, we anticipate that this will be of interest to multiple communities in the materials chemistry realm, and they will have broader impact into related technologies as well.

36 MATERIALS SCIENCE↗

The Radical Atom: Mechanosynthetic 3D Printing of an Atomically Precise SPM Tip

This research effort sought to overcome current limitations in scanning probe-based atomic manipulation to enable atomically precise manufacturing (APM). Previous theoretical and experimental works on atom by atom and molecule by molecule fabrication of precise structures are limited to essentially to two-dimensions. APM will enable a paradigm shift in 21st century manufacturing practices in which every single atom in a electronic chip, device or machine can be placed in an exact and predefined position in three-dimensions. By providing a general method for generating reproducible SPM tip structure, this project will drive forward the entire field of atomically precise scanning probe microscopy, opening the door to positional control of nearly arbitrary covalent chemistry. Such control could, for example, be used in applications such as novel 2.5 or 3D microchip fabrication. The creation of a unique manufacturing method through APM has the potential to impact technologies at the theoretical limits of performance, weight, and utility including: solid-state quantum and spintronic computing systems, high efficiency optical antenna, solar power systems, defect engineered materials and extremely efficient catalysts. Although this experiment focused on pick-and-place non-scalable APM, the better understanding of the chemistry is crucial to the eventual goal of scalable APM. To place individual atoms into a specified location is a seminal aspiration of researchers and engineers in the many fields and may have early premium applications in medical devices and microelectronics.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Radical Coupling Reactions of Hydroxystilbene Glucosides and Coniferyl Alcohol: A Density Functional Theory Study

The monolignols, p-coumaryl, coniferyl, and sinapyl alcohol, arise from the general phenylpropanoid biosynthetic pathway. Increasingly, however, authentic lignin monomers derived from outside this process are being identified and found to be fully incorporated into the lignin polymer. Among them, hydroxystilbene glucosides, which are produced through a hybrid process that combines the phenylpropanoid and acetate/malonate pathways, have been experimentally detected in the bark lignin of Norway spruce (Picea abies). Several interunit linkages have been identified and proposed to occur through homo-coupling of the hydroxystilbene glucosides and their cross-coupling with coniferyl alcohol. In the current work, the thermodynamics of these coupling modes and subsequent rearomatization reactions have been evaluated by the application of density functional theory (DFT) calculations. The objective of this paper is to determine favorable coupling and cross-coupling modes to help explain the experimental observations and attempt to predict other favorable pathways that might be further elucidated via in vitro polymerization aided by synthetic models and detailed structural studies.

59 BASIC BIOLOGICAL SCIENCES↗

High capacity organic radical mediated phosphorous anode for redox flow batteries

A battery includes a redox flow anode chamber coupled to an anode current collector, a separator, and an external container in fluid connection with the redox flow anode chamber. The external container has therein a solid phosphorus material. A first redox-active mediator and the second redox-active mediator are circulated through the half-cell electrode chamber and the external container. During a charging cycle the first redox-active mediator is reduced at the current collector electrode and the reduced first mediator reduces the phosphorus material, and wherein during a discharging cycle the second redox-active mediator is oxidized at the anode current collector electrode, and the second redox-active mediator is then reduced by the reduced phosphorus material. A method of operating a battery and a method of making a battery are also discussed.

Delnick, Frank M.↗

Insight into the Radiolytic Degradation Mechanism of TODGA

Partitioning and transmutation schemes, where americium is separated from other components of used nuclear fuel and burned in a fast neutron reactor, offer a path to dramatically decrease the space requirements for storage of nuclear fuel cycle wastes, allowing more efficient usage of potentially scarce storage resources.[1] Improvements in the efficiency of processes for separating americium from used nuclear fuels can thus have a significant impact on the costs of future nuclear fuel cycles. Understanding separation ligand radiation chemistry is important for development of new ligands and processes, as the ligand degradation products can have a deleterious effect on a separation process. Tetraoctyl diglycolamide (TODGA) has been studied as a ligand for lanthanide/minor actinide extraction for partitioning and transmutation schemes. However, the mechanism of initial energy transfer from products of solvent radiolysis to TODGA is still under debate. One proposed mechanism is attack by a n-dodecane radical cation resulting in electron abstraction and formation of a TODGA radical cation,[2] while later work has proposed hydrogen abstraction from sites adjacent to the central ether oxygen by other radical species.[3] The latter mechanism is proposed to result in degradation products from rupture of the ether bond. However, radiolytic degradation of TODGA in n-dodecane shows products that would result from rupture of all the backbone bonds. There is little information on what degradation products would be expected to form from the TODGA radical cation. In this work, we have begun to investigate this by examining the electron impact (EI) ionization mass spectrum of TODGA, which initially produces a TODGA radical cation in the gas phase. The EI spectrum shows fragments that would result from most backbone bond cleavages, similar to what is observed in the radiolysis of TODGA in n-dodecane. As the lifetime of the solvent radical cation decreases from n-dodecane to n-hexane,[4] irradiation of TODGA in n-hexane should have less solvent radical cations available for reaction with TODGA, and instead should favor reactions with longer-lived radicals. In contrast to n-dodecane, radiolytic degradation of TODGA in n-hexane produces only N,N-dioctylacetamide, which would result from rupture of the ether bond. The n-dodecane radical cation lifetime is long enough to produce TODGA radical cations but the n-hexane radical cation is mostly consumed before reaction with TODGA, so other radical processes that abstract hydrogen from TODGA dominate. This suggests that electron abstraction by the n-dodecane radical cation is an important component of TODGA radiolysis, although it does not rule out the presence of mechanisms involving hydrogen abstraction adjacent to the ether oxygen. References [1] J. Serp et al., Energies 2017, 10 (9), DOI: 10.3390/en10091445. [2] C. Zarzana et al., Solvent Extr. Ion Exch. 2015, 33 (5), 431–447, DOI: 10.1080/07366299.2015.1012885. [3] T. Koubský et al., Prog. Nucl. Energy 2017, 94, 208–215, DOI: 10.1016/j.pnucene.2016.07.010. [4] F. Sviridenko et al., Chem. Phys. Lett. 1998, 297 (3), 343–349, DOI: 10.1016/S0009-2614(98)01099-9.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

N-Terminal Decarboxylation as a Probe for Intramolecular Contact Formation in $γ$-Glu-(Pro) n -Met Peptides

The kinetics of intramolecular-contact formation between remote functional groups in peptides with restricted conformational flexibility were examined using designed peptides with variable-length proline bridges. As probes for this motion, free radicals were produced using the • OH-induced oxidation at the C-terminal methionine residue of γ-Glu-(Pro) n -Met peptides ( n = 0–3). The progress of the radicals’ motion along the proline bridges was monitored as the radicals underwent reactions along the peptides’ backbones. Of particular interest was the reaction between the sulfur atom located in the side chain of the oxidized Met residue and the unprotonated amino group of the glutamic acid moiety. Interactions between them were probed by the radiation-chemical yields (expressed as G values) of the formation of C-centered, α-aminoalkyl radicals (αN) on the Glu residue. These radicals were monitored directly or via their reaction with p -nitroacetophenone (PNAP) to generate the optically detected PNAP •– radical anions. The yields of these αN radicals were found to be linearly dependent on the number of Pro residues. A constant decrease by 0.09 μM J –1 per spacing Pro residue of the radiation-chemical yields of G (αN) was observed. Previous reports support the conclusion that the αN radicals in these cases would have to result from (S$\therefore$N) + -bonded cyclic radical cations that arose as a result from direct contact between the ends of the peptides. Furthermore, by analogy with the rate constants for the formation of intramolecularly (S$\therefore$S) + -bonded radical cations in Met-(Pro) n -Met peptides ( J. Phys. Chem. B 2016 , 120 , 9732), the rate constants for the formation of intramolecularly (S$\therefore$N) + -bonded radical cations are activated to the same extent for all of the γ-Glu-(Pro) n -Met peptides. Thus, the continuous decrease of G (αN) with the number of Pro residues (from 0 to 3) suggests that the formation of a contact between the S-atom in the C-terminal Met residue and the N-atom of a deprotonated N-terminal amino group of Glu is controlled in peptides with 0 to 3 Pro residues by the relative diffusion of the S •+ and unoxidized N-atom. The overall rate constants of cyclization to form the (S$\therefore$N)-bonded radical cations were estimated to be 3.8 × 10 6 , 1.8 × 10 6 , and 8.1 × 10 5 s –1 for peptides with n = 0, 1, and 2 Pro residues, respectively. If activation is the same for all of the peptides, then these rate constants are a direct indication for the end-to-end dynamics along the chain.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Kinetics of the benzyl + HO 2 and benzoxyl + OH barrierless association reactions: fate of the benzyl hydroperoxide adduct under combustion and atmospheric conditions

Radical–radical association reactions are challenging to address theoretically due to difficulties finding the bottleneck that variationally minimizes the reactive flux. For this purpose, the variable reaction coordinate (VRC) formulation of the variational transition state theory (VTST) represents an appropriate tool. Here, we revisited the kinetics of two radical–radical association reactions of importance in combustion modelling and poly-aromatic hydrocarbon (PAH) chemistry by performing VRC calculations: benzyl + HO 2 and benzoxyl + OH, both forming the adduct benzyl hydroperoxide. Our calculated rate constants are significantly lower than those previously reported based on VTST calculations, which results from a more efficient minimization of the reactive flux through the bottleneck achieved by the VRC formulation. Both reactions show different trends in the variation of their rate constants with temperature. We observed that if the pair of single occupied molecular orbitals (SOMOs) of the associating radicals show a similar nature, i.e. similar character, and thereby a small energy gap, a highly stabilized transition state structure is formed as the result of a very efficient SOMO–SOMO overlap, which may cancel out the free energy bottleneck for the formation of the adduct and result in large rate constants with a negative temperature dependence. This is the case of the benzoxyl and OH radical pair, whose SOMOs show O 2p nature with an energy gap of 20.2 kcal mol –1 . On the other hand, the benzyl and HO 2 radical pair shows lower rate constants with a positive temperature dependence due to the larger difference between both SOMOs (a 28.9 kcal mol –1 energy gap) as a consequence of the contribution of the multiple resonance structures of the benzyl radical. The reverse dissociation rate constants were also calculated using multi-structural torsional anharmonicity partition functions, which were not included in previous work, and the results show a much slower dissociation of benzyl hydroperoxide. Our work may help to improve kinetic models of interest in combustion and PAH formation, as well as to gain further understanding of radical–radical association reactions, which are ubiquitous in different environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Activation of Hydrogen by First-Row Transition-Metal Complexes. Final Report

We have assigned the vibrational spectra of Os 1 and Os 2 complexes of propene, butene, and acetylene, and have used them for the assignment of the vibrational frequencies of surface alkenes and alkynes. We have measured the rates of H• transfer from (C 5 R 5 )Cr(CO) 3 H to olefins of many structural types, and have learned that even one substituent on the carbon to which the H• is transferred slows down the reaction considerably. We have shown that these Cr hydrides are useful catalysts for chain transfer during radical polymerization reactions. We have determined the strengths of several M–H bonds (in particular Cr–H ones), and have confirmed that the hydrides of first-row transition metals are particularly useful for generating radicals. We have used H• transfer to terminal methylenes to generate radicals that cyclize. We have shown that (C 5 R 5 )Cr(CO) 3 H can be regenerated under H 2 and is therefore catalytic, but that (P–P)V(CO) 4 H cannot be regenerated from H 2 and therefore can only be used stoichiometrically for radical generation. (The V-H bonds are weaker than the Cr–H ones, and the H• transfer to an olefin is therefore faster.) We have found that, under five atm of H 2 pressure, cobaloximes catalyze H• transfer; they efficiently remove an H• from cyclized radicals, and therefore can be used to catalyze the cycloisomerization of some olefins. We have explored the one- and two-electron oxidation of (Ph 3 P) 6 Cu 6 H 6 . One-electron oxidation (which is reversible) generates a cation radical, whereas two-electron oxidation generates loss of a hydride (i.e., two electrons and a proton). We have found that the hydricity of (Ph 3 P) 6 Cu 6 H 6 is between 36 and 50 kcal/mol. We have shown that uncongested organic radicals (i.e., TEMPO) can catalyze H• transfer from (C 5 R 5 )Cr(CO) 3 H to congested radicals like Ar 3 C•. We have examined the one-electron oxidation of [CpV(CO 3 H] – , and have inferred from the results that the reduction of alkyl iodides with [CpV(CO 3 H] – occurs by one-electron transfer. We have been able to use that reagent to catalyze radical cyclizations from H 2 and appropriate alkyl iodides.

08 HYDROGEN↗

Radiation-Induced Oxidation Reactions of 2-Selenouracil in Aqueous Solutions: Comparison with Sulfur Analog of Uracil

One-electron oxidation of 2-selenouracil (2-SeU) by hydroxyl (●OH) and azide (●N3) radicals leads to various primary reactive intermediates. Their optical absorption spectra and kinetic characteristics were studied by pulse radiolysis with UV-vis spectrophotometric and conductivity detection and by the density functional theory (DFT) method. The transient absorption spectra recorded in the reactions of ●OH with 2-SeU are dominated by an absorption band with an λmax = 440 nm, the intensity of which depends on the concentration of 2-SeU and pH. Based on the combination of conductometric and DFT studies, the transient absorption band observed both at low and high concentrations of 2-SeU was assigned to the dimeric 2c-3e Se-Se-bonded radical in neutral form (2●). The dimeric radical (2●) is formed in the reaction of a selenyl-type radical (6●) with 2-SeU, and both radicals are in equilibrium with Keq = 1.3 × 104 M−1 at pH 4 (below the pKa of 2-SeU). Similar equilibrium with Keq = 4.4 × 103 M−1 was determined for pH 10 (above the pKa of 2-SeU), which admittedly involves the same radical (6●) but with a dimeric 2c-3e Se-Se bonded radical in anionic form (2●−). In turn, at the lowest concentration of 2-SeU (0.05 mM) and pH 10, the transient absorption spectrum is dominated by an absorption band with an λmax = 390 nm, which was assigned to the ●OH adduct to the double bond at C5 carbon atom (3●) based on DFT calculations. Similar spectral and kinetic features were also observed during the ●N3-induced oxidation of 2-SeU. In principle, our results mostly revealed similarities in one-electron oxidation pathways of 2-SeU and 2-thiouracil (2-TU). The major difference concerns the stability of dimeric radicals with a 2c-3e chalcogen-chalcogen bond in favor of 2-SeU.

2-selenouracil↗