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At least 469 records · Page 26

Toward Quantity-of-Interest Preserving Lossy Compression for Scientific Data

Today's scientific simulations and instruments are producing a large amount of data, leading to difficulties in storing, transmitting, and analyzing these data. While error-controlled lossy compressors are effective in significantly reducing data volumes and efficiently developing databases for multiple scientific applications, they mainly support error controls on raw data, which leaves a significant gap between the data and user's downstream analysis. This may cause unqualified uncertainties in the outcomes of the analysis, a.k.a quantities of interest (QoIs), which are the major concerns of users in adopting lossy compression in practice. In this paper, we propose rigorous mathematical theories to preserve four families of QoIs that are widely used in scientific analysis during lossy compression along with practical implementations. Specifically, we first develop the error control theory for univariate QoIs which are essential for computing physical properties such as kinetic energy, followed by multivariate QoIs that are more commonly used in real-world applications. The proposed method is integrated into a state-of-the-art compression framework in a modular fashion, which could easily adapt to new QoIs and new compression algorithms. Experiments on real-world datasets demonstrate that the proposed method provides faithful error control on important QoIs including kinetic energy, regional average, and isosurface without trials and errors, while offering compression ratios that are up to 4x of the compression ratios provided by state-of-the-art compressors.

Jiao, Pu↗

Diamond x-ray optics: Transparent, resilient, high-resolution, and wavefront preserving

Diamond features a unique combination of outstanding physical properties perfect for numerous x-ray optics applications, where traditional materials such as silicon fail to perform. In the last two decades, impressive progress has been achieved in synthesizing diamond with high crystalline perfection, in manufacturing efficient, resilient, high-resolution, wavefront-preserving diamond optical components, and in implementing them in cutting-edge x-ray instruments. Diamond optics are essential for tailoring x-rays to the most challenging needs of x-ray research. Furthermore, they are becoming vital for the generation of fully coherent hard x-rays by seeded x-ray free-electron lasers. In this article, we review progress in manufacturing flawless diamond crystal components and their applications in diverse x-ray optical devices, such as x-ray monochromators, beam splitters, high-reflectance backscattering mirrors, lenses, phase plates, diffraction gratings, bent-crystal spectrographs, and windows.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

AmeriFlux US-DPW Disney Wilderness Preserve Wetland

This is the AmeriFlux version of the carbon flux data for the site US-DPW Disney Wilderness Preserve Wetland. Site Description - The area was set aside for conservation as a mitigation site. It was unmanaged depression marsh

Hinkle, Charles Ross↗

AmeriFlux US-DPP Disney Wilderness Preserve Pine Flatwoods

This is the AmeriFlux version of the carbon flux data for the site US-DPP Disney Wilderness Preserve Pine Flatwoods. Site Description - The area was set aside for conservation as a mitigation site. It was unmanaged Longleaf Pine stand

Hinkle, Charles Ross [University of Central Florid↗

Finding, Organizing, and Preserving Legacy Nuclear Test Monitoring Data—Examples from the Livermore Nevada Network

A challenge for geophysical research is the relatively short time for which continuous digital data have been available. There are many events of research interest where much of the data were collected by analog or temporary digital means. These legacy data require special efforts to find, organize, and preserve for future research. Here, we focus on one type of legacy data, nuclear explosions, and associated events (e.g., collapses, aftershocks) of high interest for nuclear monitoring research and development. For nuclear tests conducted in Nevada, the Lawrence Livermore Nevada Network recorded valuable data on a variety of formats. In this article, we briefly review this network, and describe one set of data that previously was available via CD-ROM by request, and since 2018 has become available through Incorporated Research Institutions for Seismology as assembled dataset 18-001.

58 GEOSCIENCES↗

Machine Learning Training for HOM reduction and Emittance Preservation in a TESLA-type Cryomodule at FAST

Low emittance electron beams are of high importance at facilities like the LCLS-II at SLAC. Emittance dilution effects due to off-axis beam transport for a TESLA-type cryomodule (CM) have been shown at the Fermilab Accelerator Science and Technology facility. The results showed the correlation between the electron beam-induced cavity high-order modes (HOMs) and submacropulse centroid slewing and oscillation downstream of the CM. Mitigation of emittance dilution can be achieved by reducing the HOM signals and the variances in the submacropulse beam positions downstream of the CM. Here we present a Machine Learning based optimization and model construction for HOM signal level reduction using Neural Networks and Gaussian Processes. To gather training data we performed experiments using single bunch and 50 bunch electron beams with charges up to 125 pC/b. We measured HOM signals of all cavities and beam position with a set of BPMs downstream of the CM. The beam trajectory was changed using V/H125 corrector set located upstream of the CM. The results presented here will inform the LCLS-II injector commissioning and will serve as a prototype for HOM reduction and emittance preservation.

43 PARTICLE ACCELERATORS↗

Volume-preserving diffeomorphism as nonabelian higher-rank gauge symmetry

We propose nonabelian higher-rank gauge theories in 2+1D and 3+1D. The gauge group is constructed from the volume-preserving diffeomorphisms of space. We show that the intriguing physics of the lowest Landau level (LLL) limit can be interpreted as the consequences of the symmetry. We derive the renowned Girvin-MacDonald-Platzman (GMP) algebra as well as the topological Wen-Zee term within our formalism. Using the gauge symmetry in 2+1D, we derive the LLL effective action of vortex crystal in rotating Bose gas as well as Wigner crystal of electron in an applied magnetic field. We show that the nonlinear sigma models of ferromagnets in 2+1D and 3+1D exhibit the higher-rank gauge symmetries that we introduce in this paper. We interpret the fractonic behavior of the excitations on the lowest Landau level and of skyrmions in ferromagnets as the consequence of the higher-rank gauge symmetry.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

SPANet: Generalized permutationless set assignment for particle physics using symmetry preserving attention

The creation of unstable heavy particles at the Large Hadron Collider is the most direct way to address some of the deepest open questions in physics. Collisions typically produce variable-size sets of observed particles which have inherent ambiguities complicating the assignment of observed particles to the decay products of the heavy particles. Current strategies for tackling these challenges in the physics community ignore the physical symmetries of the decay products and consider all possible assignment permutations and do not scale to complex configurations. Attention based deep learning methods for sequence modelling have achieved state-of-the-art performance in natural language processing, but they lack built-in mechanisms to deal with the unique symmetries found in physical set-assignment problems. We introduce a novel method for constructing symmetry-preserving attention networks which reflect the problem's natural invariances to efficiently find assignments without evaluating all permutations. This general approach is applicable to arbitrarily complex configurations and significantly outperforms current methods, improving reconstruction efficiency between 19% - 35% on typical benchmark problems while decreasing inference time by two to five orders of magnitude on the most complex events, making many important and previously intractable cases tractable. A full code repository containing a general library, the specific configuration used, and a complete dataset release, are available at https://github.com/Alexanders101/SPANet

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

PMC$_\infty$: Infinite-Order Scale-Setting method using the Principle of Maximum Conformality and preserving the Intrinsic Conformality

We show results for Thrust and C-parameter in e^+ e^- e + e − annihilation to 3 jets obtained using the recently developed new method for eliminating the scale ambiguity and the scheme dependence in pQCD namely the Infinite-Order Scale-Setting method using the Principle of Maximum Conformality (PMC _\infty ∞ ). This method preserves an important underlying property of gauge theories: intrinsic Conformality (iCF). It leads to a remarkably efficient method to eliminate the conventional renormalization scale ambiguity at any order in pQCD. A comparison with Conventional Scale Setting method (CSS) is also shown.

Di Giustino, Leonardo↗

C-14/I-29 Preservation and Hold Time Survey

Preservation and hold time of radionuclides must account for both nuclear half-lives and nonnuclear loss mechanisms, but variations in the latter are often neglected. Metals-based defaults are inappropriate for long-lived non-metals C-14 and I-129, which are vulnerable to chemical and biological volatilization. Non-acidification is already widely practiced for them. Recommended addition measures from radiological and chemical literature include glass containers where possible, water filtration where possible, headspace minimization, light shielding, cold (4°C) storage and unfiltered water hold time of 28 days. Soil hold time may need to be shortened when water-logged, excessively sandy, or still adjusting to significant new contamination.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Mapping the metal uptake in plants from Jasper Ridge Biological Preserve using synchrotron micro-focused X-ray fluorescence spectroscopy

Serpentine soil originates in the Earth’s mantle and contains high concentrations of potentially toxic transition metals. Although serpentine soil limits plant growth, endemic and adapted plants at Jasper Ridge Biological Preserve, located behind SLAC National Accelerator Laboratory, can tolerate these conditions. Serpentine soil and seeds belonging to native California and invasive plants were collected at Jasper Ridge. The seeds were grown hydroponically and on serpentine and potting soil to examine the uptake and distribution of ions in the roots and shoots using synchrotron micro-focused X-ray fluorescence spectroscopy. The results were used to determine differences between serpentine-tolerant plants. Rye grown on potting soil was enriched in Ni, Fe, Mn, and Cr compared to purple needlegrass grown on serpentine soil. Serpentine vegetation equally suppressed the uptake of Mn, Ni, and Fe in the roots and shoots. The uptake of Ca and Mg affected the uptake of other elements such as K, S, and P.

59 BASIC BIOLOGICAL SCIENCES↗

Mapping the metal uptake in plants from Jasper Ridge Biological Preserve

Serpentine soil is derived from rocks that originated in the mantle and contain high concentrations of Fe and Mg. The soil contains high concentrations of heavy metals such as Ni and Cr, low concentrations of essential nutrients such as N, P, and K, and a low ratio of Ca to Mg. Due to its proximity to the San Andreas Fault, Jasper Ridge Biological Preserve, located behind SLAC National Accelerator Laboratory, contains regions of serpentine soil. Although serpentine soil suppresses plant growth, certain plants at Jasper Ridge have adapted to growing on it, such as rye, squirreltail, and purple needlegrass. The elemental uptake and distribution of these plants, along with non-adapted common wild oat, was compared to plants grown hydroponically and on potting soil using micro-focused X-ray fluorescence spectroscopy at the Stanford Synchrotron Radiation Lightsource. The hydroponically grown plants contained varying concentrations of Ca and Mg. X-ray fluorescence spectroscopy involves ionizing a material with X-rays, releasing photons with characteristic energies. The photon energies allows one to determine which elements are present. Rye grown on potting soil was enriched in Ni, Fe, Mn, and Cr compared to purple needlegrass grown on serpentine soil. Serpentine vegetation equally suppressed the uptake of Mn, Ni, and Fe in the roots and shoots. Varying the concentration of Ca and Mg in plants affected the uptake of other elements such as K, S, and P. The results provide further knowledge of the relationship between soil composition and elemental uptake in vegetation and can be applied to similar metal-contaminated soil systems. In the future, different plants at Jasper Ridge will be grown hydroponically to control the uptake of nutrients and metals. The results can be used to hypothesize biological controls used by the plants, and identify which genes confer or prohibit serpentine tolerance.

59 BASIC BIOLOGICAL SCIENCES↗

Mapping the Metal Uptake in Plants from Jasper Ridge Biological Preserve - Oral Presentation [Slides]

Serpentine soil originates in the Earth’s mantle and contains high concentrations of potentially toxic transition metals. Although serpentine soil limits plant growth, endemic and adapted plants at Jasper Ridge Biological Preserve, located behind SLAC National Accelerator Laboratory, can tolerate these conditions. Serpentine soil and seeds belonging to native California and invasive plants were collected at Jasper Ridge. The seeds were grown hydroponically and on serpentine and potting soil to examine the uptake and distribution of ions in the roots and shoots using synchrotron micro-focused X-ray fluorescence spectroscopy. The results were used to determine differences between serpentine-tolerant plants. Rye grown on potting soil was enriched in Ni, Fe, Mn, and Cr compared to purple needlegrass grown on serpentine soil. Serpentine vegetation equally suppressed the uptake of Mn, Ni, and Fe in the roots and shoots. The uptake of Ca and Mg affected the uptake of other elements such as K, S, and P.

59 BASIC BIOLOGICAL SCIENCES↗

ROPE: Recoverable Order-Preserving Embedding of Natural Language

We present a novel Recoverable Order-Preserving Embedding (ROPE) of natural language. ROPE maps natural language passages from sparse concatenated one-hot representations to distributed vector representations of predetermined fixed length. We use Euclidean distance to return search results that are both grammatically and semantically similar. ROPE is based on a series of random projections of distributed word embeddings. We show that our technique typically forms a dictionary with sufficient incoherence such that sparse recovery of the original text is possible. We then show how our embedding allows for efficient and meaningful natural search and retrieval on Microsoft’s COCO dataset and the IMDB Movie Review dataset.

97 MATHEMATICS AND COMPUTING↗

Bound-Preserving Reconstruction of Tensor Quantities for Remap in ALE Fluid Dynamics

We analyze several new and existing approaches for limiting tensor quantities in the context of deviatoric stress remapping in an ALE numerical simulation of elastic flow. Remapping and limiting of the tensor component-by-component is shown to violate radial symmetry of derived variables such as elastic energy or force. Therefore, we have extended the symmetry-preserving Vector Image Polygon algorithm, originally designed for limiting vector variables. This limiter constrains the vector (in our case a vector of independent tensor components) within the convex hull formed by the vectors from surrounding cells – an equivalent of the discrete maximum principle in scalar variables. We compare this method with a limiter designed specifically for deviatoric stress limiting which aims to constrain the J 2 invariant that is proportional to the specific elastic energy and scale the tensor accordingly. We also propose a method which involves remapping and limiting the J 2 invariant independently using known scalar techniques. The deviatoric stress tensor is then scaled to match this remapped invariant, which guarantees conservation in terms of elastic energy.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Preserving Simplecticity in the Numerical Integration of Linear Beam Optics

Presented are mathematical tools and methods for the development of numerical integration techniques that preserve the symplectic condition inherent to mechanics. The intended audience is for beam physicists with backgrounds in numerical modeling and simulation with particular attention to beam optics applications. The paper focuses on Lie methods that are inherently symplectic regardless of the integration accuracy order. Section 2 provides the mathematically tools used in the sequel and necessary for the reader to extend the covered techniques. Section 3 places those tools in the context of charged-particle beam optics; in particular linear beam optics is presented in terms of a Lie algebraic matrix representation. Section 4 presents numerical stepping techniques with particular emphasis on a third-order leapfrog method. Section 5 discusses the modeling of field imperfections with particular attention to the fringe fields of quadrupole focusing magnets. The direct computation of a third order transfer matrix for a fringe field is shown.

43 PARTICLE ACCELERATORS↗

Transmittal of Draft Consultation Letter to the New Mexico State Historic Preservation Officer Regarding the Proposed Loading Dock to Conference Room Conversion Building 303 at Technical Area 16

The U.S. Department of Energy (DOE), National Nuclear Security Administration (NNSA), Los Alamos Field Office (NA-LA) proposes to enclose the existing loading dock to create a conference room at building 303, located within Technical Area (TA) 16, Los Alamos National Laboratory (LANL). TA-16-303 has been determined eligible for listing in the National Register of Historic Places in correspondence with the New Mexico State Historic Preservation Division dated June 22, 2003. Eligibility status is based on its historical significance during the Cold War at Los Alamos and its representative architectural style, which is associated with high explosives research and development in support of the nation’s nuclear weapons program. As shown in the enclosed photograph, key architectural elements include a flat roof with overhangs, unpainted reinforced-concrete construction, green painted doors and trim.

99 GENERAL AND MISCELLANEOUS↗