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At least 469 records · Page 26

Understanding Customer Dissatisfaction with Underutilized Distributed File Servers

An important trend in the design of storage subsystems is a move toward direct network attachment. Network-attached storage offers the opportunity to off-load distributed file system functionality from dedicated file server machines and execute many requests directly at the storage devices. For this strategy to lead to better performance, as perceived by users, the response time of distributed operations must improve. In this paper we analyze measurements of an Andrew file system (AFS) server that we recently upgraded in an effort to improve client performance in our laboratory. While the original server's overall utilization was only about 3%, we show how burst loads were sufficiently intense to lead to period of poor response time significant enough to trigger customer dissatisfaction. In particular, we show how, after adjusting for network load and traffic to non-project servers, 50% of the variation in client response time was explained by variation in server central processing unit (CPU) use. That is, clients saw long response times in large part because the server was often over-utilized when it was used at all. Using these measures, we see that off-loading file server work in a network-attached storage architecture has to potential to benefit user response time. Computational power in such a system scales directly with storage capacity, so the slowdown during burst period should be reduced.

Riedel, Erik↗

Deep structural clustering for single-cell RNA-seq data jointly through autoencoder and graph neural network

Abstract Single-cell RNA sequencing (scRNA-seq) permits researchers to study the complex mechanisms of cell heterogeneity and diversity. Unsupervised clustering is of central importance for the analysis of the scRNA-seq data, as it can be used to identify putative cell types. However, due to noise impacts, high dimensionality and pervasive dropout events, clustering analysis of scRNA-seq data remains a computational challenge. Here, we propose a new deep structural clustering method for scRNA-seq data, named scDSC, which integrate the structural information into deep clustering of single cells. The proposed scDSC consists of a Zero-Inflated Negative Binomial (ZINB) model-based autoencoder, a graph neural network (GNN) module and a mutual-supervised module. To learn the data representation from the sparse and zero-inflated scRNA-seq data, we add a ZINB model to the basic autoencoder. The GNN module is introduced to capture the structural information among cells. By joining the ZINB-based autoencoder with the GNN module, the model transfers the data representation learned by autoencoder to the corresponding GNN layer. Furthermore, we adopt a mutual supervised strategy to unify these two different deep neural architectures and to guide the clustering task. Extensive experimental results on six real scRNA-seq datasets demonstrate that scDSC outperforms state-of-the-art methods in terms of clustering accuracy and scalability. Our method scDSC is implemented in Python using the Pytorch machine-learning library, and it is freely available at https://github.com/DHUDBlab/scDSC.

Gan, Yanglan↗

Neural substrates linking balance control and anxiety

This communication provides an update of our understanding of the neurological bases for the close association between balance control and anxiety. New data suggest that a vestibulo-recipient region of the parabrachial nucleus (PBN) contains cells that respond to body rotation and position relative to gravity. The PBN, with its reciprocal relationships with the extended central amygdaloid nucleus, infralimbic cortex, and hypothalamus, appears to be an important node in a primary network that processes convergent vestibular, somatic, and visceral information processing to mediate avoidance conditioning, anxiety, and conditioned fear responses. Noradrenergic and serotonergic projections to the vestibular nuclei also have parallel connections with anxiety pathways. The coeruleo-vestibular pathway originates in caudal locus coeruleus (LC) and provides regionally specialized noradrenergic input to the vestibular nuclei, which likely mediate effects of alerting and vigilance on the sensitivity of vestibulo-motor circuits. Both serotonergic and nonserotonergic pathways from the dorsal raphe nucleus and the nucleus raphe obscurus also project differentially to the vestibular nuclei, and 5-HT(2A) receptors are expressed in amygdaloid and cortical targets of the PBN. It is proposed that the dorsal raphe nucleus pathway contributes to both (a) a tradeoff between motor and sensory (information gathering) aspects of responses to self-motion and (b) a calibration of the sensitivity of affective responses to aversive aspects of motion. This updated neurologic model continues to be a synthetic schema for investigating the neurological and neurochemical bases for comorbidity of balance disorders and anxiety disorders.

Review↗

Transcriptomic and metabolomic changes in postharvest sugarbeet roots reveal widespread metabolic changes in storage and identify genes potentially responsible for respiratory sucrose loss

Endogenous metabolism is primarily responsible for losses in sucrose content and processing quality in postharvest sugarbeet roots. The genes responsible for this metabolism and the transcriptional changes that regulate it, however, are largely unknown. To identify genes and metabolic pathways that participate in postharvest sugarbeet root metabolism and the transcriptional changes that contribute to their regulation, transcriptomic and metabolomic profiles were generated for sugarbeet roots at harvest and after 12, 40 and 120 d storage at 5 and 12°C and gene expression and metabolite concentration changes related to storage duration or temperature were identified. During storage, 8656 genes, or 34% of all expressed genes, and 225 metabolites, equivalent to 59% of detected metabolites, were altered in expression or concentration, indicating extensive transcriptional and metabolic changes in stored roots. These genes and metabolites contributed to a wide range of cellular and molecular functions, with carbohydrate metabolism being the function to which the greatest number of genes and metabolites classified. Because respiration has a central role in postharvest metabolism and is largely responsible for sucrose loss in sugarbeet roots, genes and metabolites involved in and correlated to respiration were identified. Seventy-five genes participating in respiration were differentially expressed during storage, including two bidirectional sugar transporter SWEET17 genes that highly correlated with respiration rate. Weighted gene co-expression network analysis identified 1896 additional genes that positively correlated with respiration rate and predicted a pyruvate kinase gene to be a central regulator or biomarker for respiration rate. Overall, these results reveal the extensive and diverse physiological and metabolic changes that occur in stored sugarbeet roots and identify genes with potential roles as regulators or biomarkers for respiratory sucrose loss.

59 BASIC BIOLOGICAL SCIENCES↗

NASA Integrated Network COOP

Natural disasters, terrorist attacks, civil unrest, and other events have the potential of disrupting mission-essential operations in any space communications network. NASA's Space Communications and Navigation office (SCaN) is in the process of studying options for integrating the three existing NASA network elements, the Deep Space Network, the Near Earth Network, and the Space Network, into a single integrated network with common services and interfaces. The need to maintain Continuity of Operations (COOP) after a disastrous event has a direct impact on the future network design and operations concepts. The SCaN Integrated Network will provide support to a variety of user missions. The missions have diverse requirements and include anything from earth based platforms to planetary missions and rovers. It is presumed that an integrated network, with common interfaces and processes, provides an inherent advantage to COOP in that multiple elements and networks can provide cross-support in a seamless manner. The results of trade studies support this assumption but also show that centralization as a means of achieving integration can result in single points of failure that must be mitigated. The cost to provide this mitigation can be substantial. In support of this effort, the team evaluated the current approaches to COOP, developed multiple potential approaches to COOP in a future integrated network, evaluated the interdependencies of the various approaches to the various network control and operations options, and did a best value assessment of the options. The paper will describe the trade space, the study methods, and results of the study.

Continuity of Operations (COOP)↗

Machine Learning-Based Identification of the Interface Regions for Coupling Local and Nonlocal Models

Local-nonlocal coupling approaches provide a means to combine the computational efficiency of local models and the accuracy of nonlocal models. However, the coupling process can be challenging, requiring expertise to identify the interface between local and nonlocal regions. Here, this study introduces a machine learning-based approach to automatically detect the regions in which the local and nonlocal models should be used. The method uses loading functions evaluated at grid points to decide the model selection at those points. Training of the networks is based on datasets provided by classes of loading functions for which reference coupling configurations are computed using accurate coupled solutions, where accuracy is measured in terms of the relative error between the solution to the coupling approach and the solution to the nonlocal model. We study two approaches that vary in data structure. The first, the full-domain input data approach, uses the entire load vector and outputs a complete label vector, performing a global classification. The second, a window-based approach, processes loads into windows and addresses the problem as a node-wise classification where each window's central point is classified individually. The classification problems are solved via deep learning algorithms based on convolutional neural networks. The performance of these approaches is studied on one-dimensional numerical examples using F1-scores and accuracy metrics. Notably, the windowing approach achieves an accuracy of 0.96 and an F1-score of 0.97, highlighting its potential to automate coupling processes effectively and enhance computational efficiency in material science applications.

97 MATHEMATICS AND COMPUTING↗

Efficient Network Partitioning: Application for Decentralized State Estimation in Power Distribution Grids

Increase in the proliferation of distributed energy resources require real-time situational awareness for efficient grid operations. State estimation plays an important role for the real-time control and management of the power grid. As the sensing infrastructure grows, aggregating and handling high volumes of data at a centralized location is extremely difficult. To address this challenge, this paper first proposes a novel and efficient hier-archical spectral clustering-based network partitioning algorithm followed by a decentralized compressive sensing (DCS)-based state estimation. The applicability of the proposed network partitioning algorithm is tested on an IEEE 123-bus network, an IEEE 8,500-node system, and a 6,000+ node distribution network. The results shows that the proposed approach efficiently divides the network into multiple sub-networks with the minimum number of edge connections among the neighbors. Then, we perform DCS-based state estimation on the 6,000+ node distribution network after dividing the network into 18 optimal partitions. Simulation results show that the DCS-based state estimation recovers the system states with high accuracy and low complexity.

alternating direction method of multipliers↗

Ripple-Type Control for Enhancing Resilience of Networked Physical Systems

Distributed control agents have been advocated as an effective means for improving the resiliency of our physical infrastructures under unexpected events. Purely local control has been shown to be insufficient, centralized optimal resource allocation approaches can be slow. In this context, we put forth a hybrid low-communication saturation-driven protocol for the coordination of control agents that are distributed over a physical system and are allowed to communicate with peers over a “hotline” communication network. According to this protocol, agents act on local readings unless their control resources have been depleted, in which case they send a beacon for assistance to peer agents. Our ripple-type scheme triggers communication locally only for the agents with saturated resources and it is proved to converge. Moreover, under a monotonicity assumption on the underlying physical law coupling control outputs to inputs, the devised control is proved to converge to a configuration satisfying safe operational constraints. The assumption is shown to hold for voltage control in electric power systems and pressure control in water distribution networks. Numerical tests corroborate the efficacy of the novel scheme.

distributed control↗

Distributed Intrusion Detection System using Semantic-based Rules for SCADA in Smart Grid

Cyber-physical system (CPS) security for the smart grid enables secure communication for the SCADA and wide-area measurement system data. Power utilities world-wide use various SCADA protocols, namely DNP3, Modbus, and IEC 61850, for the data exchanges across substation field devices, remote terminal units (RTUs), and control center applications. Adversaries may exploit compromised SCADA protocols for the reconnaissance, data exfiltration, vulnerability assessment, and injection of stealthy cyberattacks to affect power system operation. In this paper, we propose an efficient algorithm to generate robust rule sets. We integrate the rule sets into an intrusion detection system (IDS), which continuously monitors the DNP3 data traffic at a substation network and detects intrusions and anomalies in real-time. To enable CPS-aware wide-area situational awareness, we integrated the methodology into an open-source distributed-IDS (D-IDS) framework. The D-IDS facilitates central monitoring of the detected anomalies from the geographically distributed substations and to the control center. The proposed algorithm provides an optimal solution to detect network intrusions and abnormal behavior. Different types of IDS rules based on packet payload, packet flow, and time threshold are generated. Further, IDS testing and evaluation is performed with a set of rules in different sequences. The detection time is measured for different IDS rules, and the results are plotted. All the experiments are conducted at Power Cyber Lab, Iowa State University, for multiple power grid models. After successful testing and evaluation, knowledge and implementation are transferred to field deployment.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Traffic Control via Connected and Automated Vehicles (CAVs): An Open-Road Field Experiment with 100 CAVs

The CIRCLES project aims to reduce instabilities in traffic flow, which are naturally occurring phenomena due to human driving behavior. Also called “phantom jams” or “stop-and-go waves,” these instabilities are a significant source of wasted energy. Toward this goal, the CIRCLES project designed a control system, referred to as the MegaController by the CIRCLES team, that could be deployed in real traffic. Our field experiment, the MegaVanderTest (MVT), leveraged a heterogeneous fleet of 100 longitudinally controlled vehicles as Lagrangian traffic actuators, each of which ran a controller with the architecture described in this article. The MegaController is a hierarchical control architecture that consists of two main layers. The upper layer is called the Speed Planner and is a centralized optimal control algorithm. It assigns speed targets to the vehicles, conveyed through the LTE cellular network. The lower layer is a control layer, running on each vehicle. It performs local actuation by overriding the stock adaptive cruise controller, using the stock onboard sensors. The Speed Planner ingests live data feeds provided by third parties as well as data from our own control vehicles and uses both to perform the speed assignment. The architecture of the Speed Planner allows for the modular use of standard control techniques, such as optimal control, model predictive control (MPC), kernel methods, and others. The architecture of the local controller allows for the flexible implementation of local controllers. Corresponding techniques include deep reinforcement learning (RL), MPC, and explicit controllers. Depending on the vehicle architecture, all onboard sensing data can be accessed by the local controllers or only some. Likewise, control inputs vary across different automakers, with inputs ranging from torque or acceleration requests for some cars to electronic selection of adaptive cruise control (ACC) setpoints in others. The proposed architecture technically allows for the combination of all possible settings proposed previously, that is {Speed Planner algorithms} × {local Vehicle Controller algorithms} × {full or partial sensing} × {torque or speed control}. As a result, most configurations were tested throughout the ramp up to the MegaVandertest (MVT).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Plasma diagnostic techniques in the ultraviolet - The C III density-sensitive lines in the sun

Spectra and spectroheliograms of the C III transitions at 977 and 1176 A are obtained with the Harvard extreme-ultraviolet spectrometer on Skylab. Analysis of the intensities of these lines, and of their density-sensitive ratio, indicates a wide range of temperature gradients and electron densities in the transition region of various solar features. From values of the observed ratio, we suggest necessary revisions to the excitation rates, and propose a relationship between the ratio and density. The significantly higher ratio found in active regions indicates a density increase of about a factor 2 relative to the network. In the quiet sun, there is no significant difference in density between network and cell interiors, but the uncertainty is as large as a factor 3. The very central 10% of the areas of cell interiors shows a significantly higher density than the mean value for cell interiors.

Dupree, A. K.↗

TOPEX ground data system

The TOPEX Project is a proposed oceanographic mission to measure the topography of the sea surface for a period of three years. This mission is sponsored by the National Aeronautics and Space Administration and managed by the Jet Propulsion Laboratory. Measurements of topography are used to study ocean currents, tides, bathymetry and the oceanic geoid. Several of the primary goals of this mission are to process and verify the altimetric data, and distribute them within days to the science investigators. This paper describes the TOPEX end-to-end ground data system. In addition to controlling the TOPEX satellite, the ground data system has been designed to minimize the time from data acquisition to science processing and data distribution. A centralized design supports the favorable response time of the system and also allows for operational efficiencies. Networking of real time and non-real time elements of the data system provides for more effective data processing.

Rosell, S. N.↗

Geodetic measurement of deformation east of the San Andreas Fault in Central California

The shear strain rates in the Diablo Range of California have been calculated, and the slip rate along the Calaveras and Paicines faults in Central California have been estimated, on the basis of triangulation and trilateration data from two geodetic networks located between the western edge of the Great Valley and the San Andreas Fault. The orientation of the principal compressive strain predicted from the azimuth of the major structures in the region is N 25 deg E, leading to an average shear strain value that corresponds to a relative shortening rate of 4.5 + or - 2.4 mm/yr. It is inferred that the measured strain is due to compression across the fold of this area. The hypothesized uniform, fault-normal compression within the Coast Ranges is not supported by these results.

Sauber, Jeanne↗

Improving regional health care in West Africa using current space systems and technology

This paper discusses the issues involved with establishing an integrated satellite health network in West Africa based on currently available technology. The system proposed makes use of a central national facility capable of transmitting and receiving voice/data and video signals from the entire country. Regional, field and local facilities provides timely epidemiologic information, sharing of medical expertise through telemedical consultations, enhances optimized resource distribution and builds a framework for telecommunications for the entire country.

Jemison, Mae C.↗

Advanced satellite workstation: An integrated workstation environment for operational support of satellite system planning and analysis

A prototype integrated environment, the Advanced Satellite Workstation (ASW), is described that has been developed and delivered for evaluation and operator feedback in an operational satellite control center. The current ASW hardware consists of a Sun Workstation and Macintosh II Workstation connected via an ethernet Network Hardware and Software, Laser Disk System, Optical Storage System, and Telemetry Data File Interface. The central mission of ASW is to provide an intelligent decision support and training environment for operator/analysts of complex systems such as satellites. There have been many workstation implementations recently which incorporate graphical telemetry displays and expert systems. ASW is a considerably broader look at intelligent, integrated environments for decision support, based upon the premise that the central features of such an environment are intelligent data access and integrated toolsets. A variety of tools have been constructed in support of this prototype environment including: an automated pass planner for scheduling vehicle support activities, architectural modeler for hierarchical simulation and analysis of satellite vehicle subsystems, multimedia-based information systems that provide an intuitive and easily accessible interface to Orbit Operations Handbook and other relevant support documentation, and a data analysis architecture that integrates user modifiable telemetry display systems, expert systems for background data analysis, and interfaces to the multimedia system via inter-process communication.

Sutton, Stewart A.↗

Improving regional health care in West Africa using current space systems and technology

This paper discusses the issues involved with establishing an integrated satellite health network in West Africa based on currently available technology. The system proposed makes use of a central national facility capable of transmitting and receiving voice/data and video signals from the entire country. Regional, field and local facilities provide timely epidemiologic information, sharing of medical expertise through telemedical consultations, enhance optimized resource distribution and build a framework for telecommunications for the entire country.

Jemison, Mae C.↗

Upgrade of the Thermal Vacuum Data System at NASA/GSFC

The Goddard Space Flight Center's new thermal vacuum data acquisition system is a networked client-sever application that enables lab operations crews to monitor all tests from a central location. The GSFC thermal vacuum lab consists of eleven chambers in Building 7 and one chamber in Building 10. The new data system was implemented for several reasons. These included the need for centralized data collection, more flexible and easier to use operator interface, greater data accessibility, a reduction in testing time and cost, and increased payload and personnel safety. Additionally, a new data system was needed for year-2000 compliance. This paper discusses the incorporation of the Thermal Vacuum Data System (TVDS) within the thermal vacuum lab at GSFC, its features and capabilities and lessons learned in its implementation. Additional topics include off-center (Internet) capability for remote monitoring and the role of TVDS in the efforts to automate thermal vacuum chamber operations.

Palmer, John↗

Upgrade of The Thermal Vacuum Data System at NASA/GSFC

The Goddard Space Flight Center's new thermal vacuum data acquisition system is a networked client-sever application that enables lab operations crews to monitor all tests from a central location. The GSFC thermal vacuum lab consists of eleven chambers in Building 7 and one chamber in Building 10. The new data system was implemented for several reasons. These included the need for centralized data collection, more flexible and easier to use operator interface, greater data accessibility, a reduction in testing time and cost, and increased payload and personnel safety. Additionally, a new data system was needed for year-2000 compliance. This paper discusses the incorporation of the Thermal Vacuum Data System (TVDS) within the thermal vacuum lab at GSFC, its features and capabilities and lessons learned in its implementation. Additional topics include off-center (Internet) capability for remote monitoring and the role of TVDS in the efforts to automate thermal vacuum chamber operations.

Palmer, John↗