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At least 469 records · Page 26

Global metagenomics reveals plastid diversity and unexplored algal lineages

Photosynthetic organelles in eukaryotes originated through primary endosymbiosis with a cyanobacterium, an event that profoundly shaped the evolutionary landscape of the eukaryotic tree of life. Primary plastids in Archaeplastida, especially in cultivable plants and algae, contribute most to known plastid diversity. Secondary and higher-order endosymbiosis, involving eukaryotic hosts and algal endosymbionts, further spread photosynthesis among protists within the CASH lineages (Cryptophyta, Alveolata, Stramenopila, and Haptophyta). Despite various hypotheses explaining secondary plastid evolution and distribution, empirical support remains limited. Here, we employ cultivation-independent global metagenomics to expand plastid diversity and investigate plastid origins. We capture 1,027 plastid sequences, including 300 novel sequences belonging to previously unsequenced plastids and representing yet-to-be described microeukaryotes. This includes a new lineage that offers insights into plastid evolution in haptophytes and cryptophytes. Our results confirm that Archaeplastida plastids originate from an early branching cyanobacterial lineage closely related to Gloeomargaritales and identify the closest extant relative of Paulinella plastids. Additionally, our findings suggest two independent origins of secondary red-algal plastids, contributing to plastid diversity in CASH lineages and challenging the prevailing model of single secondary plastid origin. Our study highlights the importance of metagenomic data in uncovering biological diversity and advancing understanding of plastid relationships across photosynthetic eukaryotes.

59 BASIC BIOLOGICAL SCIENCES↗

The critical role of soil moisture in compound hazards

Soil moisture regulates the exchange of energy, water, and carbon across land–vegetation–atmosphere interfaces. Extremes in soil moisture can amplify natural hazards through interactions with diverse Earth system processes. Despite its mechanistic importance, soil moisture remains underrepresented in hazard research and predictive frameworks. Here, in this study, we review our current understanding of the role of soil moisture in the evolution and onset of diverse compound hazards by synthesizing the latest findings from observational and modelling studies. We highlight key soil moisture mechanisms, including atmospheric feedbacks that amplify drought–heatwave–wildfire events, precipitation couplings that promote clustered storms, and threshold responses that drive vegetation die-offs, trigger landslides, and induce flooding. Persistent challenges in observational data, model representation and operational implementation have limited the integration of soil moisture into hazard early-warning systems. Addressing these gaps through advances in observations, data assimilation, and physics-based and data-driven modelling will enhance hazard prediction and preparedness in a rapidly changing world.

Li, Chuxuan [University of California, Los Angeles↗

Towards Floquet Chern insulators of light

Topological photonics explores photonic systems that exhibit robustness against defects and disorder, enabled by protection from underlying topological phases. These phases are typically realized in linear optical systems and characterized by their intrinsic photonic band structures. Here we experimentally study Floquet Chern insulators in periodically driven nonlinear photonic crystals, where the topological phase is controlled by the polarization and the frequency of the driving field. Our transient sum-frequency generation measurements reveal strong hybridization of the Floquet photonic bands. The measured spectrum remains gapless under a linearly polarized drive but becomes gapped under a circularly polarized drive. Theoretical analysis confirms that the Floquet gap is topological, characterized by a non-zero Chern number—a consequence of time-reversal symmetry breaking induced by the circularly polarized driving field. Furthermore, this work offers opportunities to explore the role of classical optical nonlinearity in topological phases and their applications in nonlinear optoelectronics.

36 MATERIALS SCIENCE↗

Magnetic character of the low-energy enhancement in 70 Zn

The transition of an atomic nucleus from an excited state to a state of lower energy is typically accompanied by the emission of photons. The likelihood of photon emission is a function of the photon energy and of properties of the initial and final nuclear states and is known as the photon (or γ-ray) strength function (γSF). Of the features present in the γSF, an enhancement in the low-energy region has been observed in some nuclei, but the electromagnetic nature of this enhancement remains an open question. This low-energy enhancement in the γSF significantly impacts our understanding of how elements are created in stars and the structure of the nucleus. Here we present the results from an experiment on the γSF of 70 Zn that show that the enhancement in the γSF of this nucleus is of magnetic nature. This observation helps address a long-open question about γSFs in atomic nuclei and directly impacts our predictive capabilities in nuclear science.

Physics - Nuclear physics and radiation physics↗

A clearer picture of who lives in the world’s cities

A new city-level dataset examines how urban population structures have changed worldwide between 2000 and 2020. Here, the work reveals divergent age distributions, sex ratios and migration patterns across more than 10,000 cities, and it provides evidence for locally tailored urban planning.

Zimmer, Andrew [Oak Ridge National Laboratory (ORN↗

Mapping of lanthanide-tagged proteins on western blot paper using microextraction-inductively coupled plasma-mass spectrometry

A microextraction (ME) sampling system, paired with inductively coupled plasma-mass spectrometry (ICP-MS), was employed to spatially analyze proteins tagged with lanthanum (La), gadolinium (Gd), or terbium (Tb) on the surface of western blot paper. The proteins were covalently tagged, separated via gel electrophoresis, and transferred to western blot paper for analysis by ME-ICP-MS. The ME-ICP-MS method enables the direct sampling of the tagged species on the western blot paper, without any sample preparation. Traditionally, the tagged analyte would need to be stained, excised, and digested to be analyzed by ICP-MS for its elemental and isotopic characterization. Preliminary detection limits for the ME-ICP-MS method applied to western blot paper were established to be 564, 54, and 2.5 fg for La, Gd, and Tb, respectively. The developed ME-ICP-MS method was compared to laser ablation (LA) ICP-MS, another direct solid sampling technique; it was readily determined that ME-ICP-MS can effectively map the elemental constituents on the western blot paper with comparable analysis time and measurement sensitivity. The analysis time per 2 × 4 mm extraction is ∼1 minute; if protein spots are directly targeted (rather than systematically mapping the entire blot paper), the analysis time per protein spot is ∼1 min. This developed method proved to be fast, effective, and accessible for correlating protein molecular weight with the detection of the inorganic tagant. The ME-ICP-MS approach could be widely applicable in research areas that involve metal-tagged protein bioconjugates, such as in the development of diagnostic and therapeutic agents and other biochemical probes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Verification of the Shafranov shift in free-boundary VMEC, DESC, and SPEC calculations with elliptical geometry

Here, given a set of current-carrying filaments that create a magnetic field with rotating elliptical flux surfaces, we present verification calculations using the VMEC, DESC, and SPEC free-boundary magnetohydrostatic equilibrium codes for both the “vacuum” equilibrium, for which there is no plasma pressure and no plasma currents, and for a non-zero pressure, zero toroidal current equilibrium. For the vacuum case, these codes are quantitatively compared to the magnetic field produced by the coils. For the non-zero pressure case, they are compared to each other. As the stepped pressure profile used in SPEC approaches the continuous profile used in VMEC and DESC, the SPEC magnetic axis approaches the VMEC and DESC axes. To within an error given by the difference between the pressure profiles, the VMEC, DESC, and SPEC calculations give the same pressure-induced geometric shift of the magnetic axis, known as the Shafranov shift.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Performance of the ATLAS muon triggers in Run 2

The performance of the ATLAS muon trigger system is evaluated with proton-proton ( pp ) and heavy-ion (HI) collision data collected in Run 2 during 2015–2018 at the Large Hadron Collider. It is primarily evaluated using events containing a pair of muons from the decay of Z bosons to cover the intermediate momentum range between 26 GeV and 100 GeV. Overall, the efficiency of the single-muon triggers is about 68% in the barrel region and 85% in the endcap region. The p T range for efficiency determination is extended by using muons from decays of J ψ mesons, W bosons, and top quarks. The performance in HI collision data is measured and shows good agreement with the results obtained in pp collisions. The muon trigger shows uniform and stable performance in good agreement with the prediction of a detailed simulation. Dedicated multi-muon triggers with kinematic selections provide the backbone to beauty, quarkonia, and low-mass physics studies. The design, evolution and performance of these triggers are discussed in detail.

47 OTHER INSTRUMENTATION↗

Crop diversification improves water-use efficiency and regional water sustainability

As global water scarcity intensifies, identifying agricultural practices that enhance sustainable water management is critical. Temporal crop diversification-rotating multiple species over time-has been proposed to improve soil health and water retention based on field-scale experiments. However, widespread adoption remains limited on farms, in part due to unverified benefits at larger scales. Here, we assess the influence of crop diversification on agricultural water-use efficiency (WUE, ratio of gross primary productivity to evapotranspiration) along a spectrum of monoculture to complex species rotations in California. Leveraging new high-resolution remote sensing datasets, we show that crop diversification is a key driver of agricultural WUE, and increasing the number of species planted in the previous 6 years from two to four increases WUE by ∼20% after accounting for differences between crops. Our results provide spatially explicit, large-scale quantification of crop diversification’s improvements to WUE, with direct implications for climate adaptation. More broadly, our framework offers a tool to evaluate other sustainable practices and guide policy and farm-scale decision-making.

climate-resilient agriculture↗

Environmental and ecological signals predict food shortages for subtropical populations of Australian flying foxes, reservoirs of Hendra virus

Food availability determines where and how animals use space across a landscape and, therefore, affects the risk of encounters leading to zoonotic spillover. This relationship is evident in Australian flying foxes (Pteropus spp.; fruit bats), where acute food shortages precede clusters of Hendra virus spillovers. Using machine learning, we predicted months of food shortages from climatological and ecological covariates (1996–2022) in subtropical Australia. Overall accuracy in predicting months of low food availability on a test set from 2018 up to 2022 reached 93.33 and 92.59% based on climatological and bat-level features, respectively. Seasonality and the Oceanic El Niño Index were the most important environmental features, while the number of bats in rescue centres and their body weights were the most important bat-level features. These models support predictive signals up to nine months in advance, facilitating action to mitigate spillover risk.

Pteropus↗

Measurement of the production of a $W$ boson in association with a charmed hadron in $pp$ collisions at $\sqrt{s}$ = $\mathrm{13 TeV}$ with the ATLAS detector

The production of a $W$ boson in association with a single charm quark is studied using 140 fb –1 of $\sqrt{s}$ = $13$ $\mathrm{TeV}$ proton-proton collision data collected with the ATLAS detector at the Large Hadron Collider. The charm quark is tagged by the presence of a charmed hadron reconstructed with a secondary-vertex fit. The $W$ boson is reconstructed from the decay to either an electron or a muon and the missing transverse momentum present in the event. The charmed mesons reconstructed are D + → K – π + π + and D *+ → D 0 π + → (K – π + ) π + and the charge conjugate decays in the fiducial regions where $p$ T ($e,μ$) > 30 GeV, |$η(e,μ)$| < 2.5, $p$ T (D (*) ) > 8 GeV, and |$η$(D (*) )| < 2.2. The integrated and normalized differential cross sections as a function of the pseudorapidity of the lepton from the $W$ boson decay, and of the transverse momentum of the charmed hadron, are extracted from the data using a profile likelihood fit. The measured total fiducial cross sections are ${σ}_{fid}^{OS – SS}$ (W – + D + ) = 50.2 ± 0.2 ${(stat)}_{–2.3}^{+2.4}$(syst) pb, ${σ}_{fid}^{OS – SS}$ (W + + D – ) = 48.5 ± 0.2 ${(stat)}_{–2.2}^{+2.3}$(syst) pb, ${σ}_{fid}^{OS – SS}$ (W – + D *+ ) = 51.1 ± 0.4 ${(stat)}_{–1.8}^{+1.9}$(syst) pb, ${σ}_{fid}^{OS – SS}$ (W + + D *– ) = 50.0 ± 0.4 ${(stat)}_{–1.8}^{+1.9}$(syst) pb. Results are compared with the predictions of next-to-leading-order quantum chromodynamics calculations performed using state-of-the-art parton distribution functions. Additionally, the ratio of charm to anticharm production cross sections is studied to probe the $s$-$\bar{s}$ quark asymmetry. The ratio is found to be ${R}_{c}^{±}$= 0.971 ± 0.006 (stat) ± 0.011 (syst). The ratio and cross-section measurements are consistent with the predictions obtained with parton distribution function sets that have a symmetric $s$-$\bar{s}$ sea, indicating that any $s$-$\bar{s}$ asymmetry in the Bjorken-x region relevant for this measurement is small.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Characterizing the Oscillatory Properties of Bulk Electric Systems

This paper presents a process for characterizing the oscillatory dynamics of a large bulk power system. As a demonstration, the process is applied to the Western Interconnection of North America. Several complementary analysis approaches, both new and existing, are employed to provide a comprehensive understanding of the oscillatory properties of the system. Established modal analysis techniques based on ringdown and mode-meter algorithms are utilized. In addition, we derive and apply methods based on spectral correlation analysis to identify modal frequencies, distinguish between modes that are closely spaced in frequency, and determine locations at which the modes are observable. Critical interarea modes are identified and characterized using actual-system synchrophasor measurements taken over several years of operation in concert with industry-standard simulation models. This includes 145 hours of PMU data and two planning base cases.

42 ENGINEERING↗

Multicarrier Spread Spectrum Communications With Noncontiguous Subcarrier Bands for HF Skywave Links

Existing high-frequency (HF) radio platforms offer robust performance against the volatile HF propagation channel. However, the growing traffic across the band contests the reliability of these systems. While techniques to mitigate the effects of narrowband interference have been thoroughly explored, they are insufficient against wideband interference or when the transmission band is occupied by numerous scattered users. To improve reliability in these congested channel conditions, we propose a filter-bank based multicarrier spread-spectrum waveform with noncontiguous subcarrier bands. Using noncontiguous subcarrier bands enables the system to at once leverage the robustness of a wideband system while retaining the frequency agility of a narrowband system. In this study, we modify a filter-bank transmitter structure to accommodate noncontiguous subcarrier bands and consider several immediate impacts of this change, such as elevated peak-to-average-power ratios (PAPRs). A receiver architecture to process the noncontiguous spread-spectrum signal is also introduced, along with details regarding wideband channel estimation. Finally, we develop efficient transmitter and receiver structures to support practical system implementations. We conclude by comparing the performance of contiguous and noncontiguous systems through both simulation and over-the-air testing. The results show that the noncontiguous system remains robust in typical HF channels while significantly outperforming the contiguous system in congested spectral conditions.

(PAPR↗

Combining Observations and Models: A Review of the CARDAMOM Framework for Data‐Constrained Terrestrial Ecosystem Modeling

The rapid increase in the volume and variety of terrestrial biosphere observations (i.e., remote sensing data and in situ measurements) offers a unique opportunity to derive ecological insights, refine process‐based models, and improve forecasting for decision support. However, despite their potential, ecological observations have primarily been used to benchmark process‐based models, as many past and current models lack the capability to directly integrate observations and their associated uncertainties for parameterization. In contrast, data assimilation frameworks such as the CARbon DAta MOdel fraMework (CARDAMOM) and its suite of process‐based models, known as the Data Assimilation Linked Ecosystem Carbon Model (DALEC), are specifically designed for model‐data fusion. This review, motivated by a recent CARDAMOM community workshop, examines the development and applications of CARDAMOM, with an emphasis on its role in advancing ecosystem process understanding. CARDAMOM employs a Bayesian approach, using a Markov Chain Monte Carlo algorithm to enable data‐driven calibration of DALEC parameters and initial states (i.e., carbon pool sizes) through observation operators. CARDAMOM's unique ability to retrieve localized model process parameters from diverse datasets—ranging from in situ measurements to global satellite observations—makes it a highly flexible tool for analyzing spatially variable ecosystem responses to environmental change. However, assimilating these data also presents challenges, including data quality issues that propagate into model skill, as well as trade‐offs between model complexity, parameter equifinality, and predictive performance. We discuss potential solutions to these challenges, such as reducing parameter equifinality by incorporating new observations. This review also offers community recommendations for incorporating emerging datasets, integrating machine learning techniques, strengthening collaboration with remote sensing, field, and modeling communities, and expanding CARDAMOM's relevance for localized ecosystem monitoring and decision‐making. CARDAMOM enables a deep, mechanistic understanding of terrestrial ecosystem dynamics that cannot be achieved through empirical analyses of observational datasets or weakly constrained models alone.

Bayesian inference↗

Matrix Diffusion Controls Mountain Hillslope Groundwater Ages and Inferred Storage Dynamics

Groundwater age distributions provide fundamental insights on coupled water and biogeochemical processes in mountain watersheds. Field-based studies have found mixtures of young and old-aged groundwater in mountain catchments underlain by bedrock; yet, the processes that dictate these groundwater age distributions are poorly understood. In this work, we use the coupled ParFlow-CLM integrated hydrologic and EcoSLIM particle tracking models to simulate groundwater age distributions on a lower montane hillslope in the East River Watershed, Colorado (USA). We develop a convolution-based approach to propagate fracture-matrix diffusion processes to the EcoSLIM advection-dominated age distributions. We compare observed 3 H and 4 He concentrations from two groundwater wells against model predictions that have varying advective transport times and matrix diffusion magnitudes. Based on a Monte Carlo analysis that considers uncertain matrix and fracture parameters, we find that matrix diffusion is needed to jointly predict 3 H and 4 He observations at both wells. The advection-dominated age distributions lack adequate mixing of young and old-aged water to capture the observed co-occurrence of 3 H and 4 He. The model scenario that best matches the 3 H, 4 He, and water level observations when considering both advective flowpath and matrix diffusion mixing processes has a dynamic bedrock groundwater reservoir that is susceptible to considerable storage losses during low-snow periods. This dynamic groundwater system amplifies the need to assimilate deeper bedrock groundwater into watershed hydro-biogeochemical predictions. This work further highlights the importance of considering matrix diffusion when interpreting environmental tracers in bedrock groundwater systems.

54 ENVIRONMENTAL SCIENCES↗

Tree drought physiology: critical research questions and strategies for mitigating climate change effects on forests

Droughts of increasing severity and frequency are a primary cause of forest mortality associated with climate change. Yet, fundamental knowledge gaps regarding the complex physiology of trees limit the development of more effective management strategies to mitigate drought effects on forests. Here, in this work, we highlight some of the basic research needed to better understand tree drought physiology and how new technologies and interdisciplinary approaches can be used to address them. Our discussion focuses on how trees change wood development to mitigate water stress, hormonal responses to drought, genetic variation underlying adaptive drought phenotypes, how trees ‘remember’ prior stress exposure, and how symbiotic soil microbes affect drought response. Next, we identify opportunities for using research findings to enhance or develop new strategies for managing drought effects on forests, ranging from matching genotypes to environments, to enhancing seedling resilience through nursery treatments, to landscape-scale monitoring and predictions. We conclude with a discussion of the need for co-producing research with land managers and extending research to forests in critical ecological regions beyond the temperate zone.

54 ENVIRONMENTAL SCIENCES↗

Measurement of the transverse momentum distribution of Drell–Yan lepton pairs in proton–proton collisions at √s=13 TeV with the ATLAS detector

This paper describes precision measurements of the transverse momentum $p_\mathrm {T}^{\ell \ell }$ ($\ell =e,\mu $) and of the angular variable $\phi ^{*}_{\eta }$ distributions of Drell–Yan lepton pairs in a mass range of 66–116 GeV. The analysis uses data from 36.1 fb$^{-1}$ of proton–proton collisions at a centre-of-mass energy of $\sqrt{s}=13\,$TeV collected by the ATLAS experiment at the LHC in 2015 and 2016. Measurements in electron-pair and muon-pair final states are performed in the same fiducial volumes, corrected for detector effects, and combined. Compared to previous measurements in proton–proton collisions at $\sqrt{s}=7$ and $8\,$TeV, these new measurements probe perturbative QCD at a higher centre-of-mass energy with a different composition of initial states. They reach a precision of 0.2$\%$ for the normalized spectra at low values of $p_\mathrm {T}^{\ell \ell }$. The data are compared with different QCD predictions, where it is found that predictions based on resummation approaches can describe the full spectrum within uncertainties.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of the CP-violating phase &straightphi; s in B$_s^0$→J/ψ&straightphi; decays in ATLAS at 13 TeV

A measurement of the B$_s^0$→J/ψ&straightphi; decay parameters using 80.5 fb -1 of integrated luminosity collected with the ATLAS detector from 13 Te proton–proton collisions at the LHC is presented. The measured parameters include the CP-violating phase &straightphi; s , the width difference Δ Γ s between the B$_s^0$ meson mass eigenstates and the average decay width Γ s . The values measured for the physical parameters are combined with those from 19.2fb -1 of 7 and 8 Te data, leading to the following: &straightphi;s=-0.087±0.036(stat.)±0.021(syst.)rad ΔΓ s =0.0657±0.0043(stat.)±0.0037(syst.)ps -1 Γ s =0.6703±0.0014(stat.)±0.0018(syst.)ps -1 Results for &straightphi; s and Δ Γ s are also presented as 68% confidence level contours in the &straightphi; s –Δ Γ s plane. Furthermore the transversity amplitudes and corresponding strong phases are measured. &straightphi; s and Δ Γ s measurements are in agreement with the Standard Model predictions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗