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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 469 records · Page 26
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Real-time structural motif searching in proteins using an inverted index strategy

Biochemical and biological functions of proteins are the product of both the overall fold of the polypeptide chain, and, typically, structural motifs made up of smaller numbers of amino acids constituting a catalytic center or a binding site that may be remote from one another in amino acid sequence. Detection of such structural motifs can provide valuable insights into the function(s) of previously uncharacterized proteins. Technically, this remains an extremely challenging problem because of the size of the Protein Data Bank (PDB) archive. Existing methods depend on a clustering by sequence similarity and can be computationally slow. We have developed a new approach that uses an inverted index strategy capable of analyzing >170,000 PDB structures with unmatched speed. The efficiency of the inverted index method depends critically on identifying the small number of structures containing the query motif and ignoring most of the structures that are irrelevant. Our approach (implemented at motif.rcsb.org ) enables real-time retrieval and superposition of structural motifs, either extracted from a reference structure or uploaded by the user. Herein, we describe the method and present five case studies that exemplify its efficacy and speed for analyzing 3D structures of both proteins and nucleic acids.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Leveraging Gaussian Mixture Models for Detecting Anomalies in Time-Series Data

Test systems must be capable of classifying measured data as expected or anomalous in real time. Anomalous results may portend system failure, and, if undetected, may result in damage to the unit, test equipment, or potential harm to personnel. This report investigates the use of Gaussian Mixture Models (GMMs) as a clustering tool in classifying time-series data.

Wilke, Rudeger H.T. [Sandia National Laboratories ↗
DOE OSTI2020

Encoding Multilayer Complexity in Anti‐Counterfeiting Heterometallic MOF‐Based Optical Tags

Abstract Optical tags provide a way to quickly and unambiguously identify valuable assets. Current tag fluorophore options lack the tunability to allow combined methods of encoding in a single material. Herein we report a design strategy to encode multilayer complexity in a family of heterometallic rare‐earth metal–organic frameworks based on highly connected nonanuclear clusters. To impart both intricacy and security, a synergistic approach was implemented resulting in both overt (visible) and covert (near‐infrared, NIR) properties, with concomitant multi‐emissive spectra and tunable luminescence lifetimes. Tag authentication is validated with a variety of orthogonal detection methodologies. Importantly, the effect induced by subtle compositional changes on intermetallic energy transfer, and thus on the resulting photophysical properties, is demonstrated. This strategy can be widely implemented to create a large library of highly complex, difficult‐to‐counterfeit optical tags.

Deneff, Jacob I.↗
DOE OSTI2023

Microdiverse bacterial clades prevail across Antarctic wetlands

Antarctica's extreme environmental conditions impose selection pressures on microbial communities. Indeed, a previous study revealed that bacterial assemblages at the Cierva Point Wetland Complex (CPWC) are shaped by strong homogeneous selection. Yet which bacterial phylogenetic clades are shaped by selection processes and their ecological strategies to thrive in such extreme conditions remain unknown. Here, we applied the phyloscore and feature-level βNTI indexes coupled with phylofactorization to successfully detect bacterial monophyletic clades subjected to homogeneous (HoS) and heterogenous (HeS) selection. Remarkably, only the HoS clades showed high relative abundance across all samples and signs of putative microdiversity. The majority of the amplicon sequence variants (ASVs) within each HoS clade clustered into a unique 97% sequence similarity operational taxonomic unit (OTU) and inhabited a specific environment (lotic, lentic or terrestrial). Our findings suggest the existence of microdiversification leading to sub-taxa niche differentiation, with putative distinct ecotypes (consisting of groups of ASVs) adapted to a specific environment. We hypothesize that HoS clades thriving in the CPWC have phylogenetically conserved traits that accelerate their rate of evolution, enabling them to adapt to strong spatio-temporally variable selection pressures. Variable selection appears to operate within clades to cause very rapid microdiversification without losing key traits that lead to high abundance. Variable and homogeneous selection, therefore, operate simultaneously but on different aspects of organismal ecology. The result is an overall signal of homogeneous selection due to rapid within-clade microdiversification caused by variable selection. It is unknown whether other systems experience this dynamic, and we encourage future work evaluating the transferability of our results.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Prong Segmentation using Point Set Transformers in Multiple View Neutrino Detectors

NOvA is a long-baseline neutrino experiment studying neutrino oscillations by detecting neutrinos from the NuMI beam at Fermilab. Its physics analysis relies on accurate prong segmentation, which involves matching each hit to its source particle and identifying the particle type. This task has commonly been addressed using a combination of traditional clustering algorithms and convolutional neural networks (CNNs). However, NOvA’s detector design presents data as two sparse and decoupled 2D images (XZ and YZ views) rather than a native 3D representation, posing a significant challenge for traditional CNN-based models. In this talk, we propose a novel neural network based on the Point Set Transformer. By treating detector hits as sparse point clouds and implementing a cross-view attention mechanism, our model enables efficient information mixing between both views. Evaluated on NOvA simulated data, our model achieves superior accuracy while requiring significantly fewer computational resources compared to other models. Furthermore, the model demonstrates great performance when applied to Liquid Argon Time Projection Chamber (LArTPC) data, which shows its potential as a universal prong segmentation algorithm for multiple view neutrino detectors.

Liu, Jiaxi [UC, Irvine]↗
DOE OSTI2021

A Deeper Look at DES Dwarf Galaxy Candidates: Grus i and Indus ii

We present deep g- and r-band Magellan/Megacam photometry of two dwarf galaxy candidates discovered in the Dark Energy Survey (DES), Grus i and Indus ii (DES J2038–4609). For the case of Grus i, we resolved the main sequence turn-off (MSTO) and ~2 mags below it. The MSTO can be seen at g 0 ~24 with a photometric uncertainty of 0.03 mag. We show Grus i to be consistent with an old, metal-poor (~13.3 Gyr, [Fe/H] ~ -1.9) dwarf galaxy. We derive updated distance and structural parameters for Grus i using this deep, uniform, wide-field data set. We find an azimuthally-averaged halflight radius more than two times larger (~151 +21 -31 pc; ~$4\buildrel{\,\prime}\over{.} {16}_{-0.74}^{+0.54}$) and an absolute V-band magnitude ~-4.1 that is ~1 magnitude brighter than previous studies. We obtain updated distance, ellipticity, and centroid parameters that are in agreement with other studies within uncertainties. Although our photometry of Indus ii is ~2–3 magnitudes deeper than the DES Y1 public release, we find no coherent stellar population at its reported location. The original detection was located in an incomplete region of sky in the DES Y2Q1 data set and was flagged due to potential blue horizontal branch member stars. The best-fit isochrone parameters are physically inconsistent with both dwarf galaxies and globular clusters. We conclude that Indus ii is likely a false positive, flagged due to a chance alignment of stars along the line of sight.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Optical tags comprising rare earth metal-organic frameworks

Optical tags provide a way to identify assets quickly and unambiguously, an application relevant to anti-counterfeiting and protection of valuable resources or information. The present invention is directed to a tag fluorophore that encodes multilayer complexity in a family of heterometallic rare-earth metal-organic frameworks (RE-MOFs) based on highly connected polynuclear clusters and carboxylic acid-based linkers. Both overt (visible) and covert (near infrared, NIR) properties with concomitant multi-emissive spectra and tunable luminescence lifetimes impart both intricacy and security. Tag authentication can be validated with a variety of orthogonal detection methodologies. The relationships between structure, composition, and optical properties of the family of RE-MOFs can be used to create a large library of rationally designed, highly complex, difficult to counterfeit optical tags.

Sava Gallis, Dorina F.↗
DOE OSTI2026

Resonant scattering at the center of the galaxy cluster PKS 0745-191 with XRISM

We report evidence of the resonant scattering effect at the center of the galaxy cluster PKS 0745-191 with XRISM. We analyzed XRISM/Resolve commissioning-phase observations of the distant cluster PKS 0745-191 ($z = 0.103$) with a $54$ ks exposure. The gain drift was corrected using the onboard modulated X-ray source (MXS), and spectra were extracted from all the pixels that were well illuminated by MXS, the core region (four central pixels, $\sim$100 kpc), and the surrounding region. A single-temperature collisional ionization equilibrium (CIE) model fits the full field-of-view spectrum with $kT \approx 6$ keV and a turbulent velocity of ${\approx}120$ km s$^{-1}$. From the core ($r < 50$ kpc) spectrum, we detected a ${\approx}22\%$ suppression of the Fe xxv He$\alpha$ resonance (w) line relative to the CIE prediction. We performed a Monte Carlo simulation to calculate the resonant scattering (RS) effect using radial profiles from Chandra data. The RS-inferred turbulence agrees with that by Resolve line-broadening, demonstrating that RS provides an independent and consistent constraint on ICM turbulence. These results highlight XRISM/Resolve’s potential for turbulence studies in galaxy clusters.

Astronomy and AstroPhysics↗
DOE OSTI2020

Encoding Multilayer Complexity in Anti-Counterfeiting Heterometallic MOF-based Optical Tags

Optical tags provide a way to quickly and unambiguously identify valuable assets. Current tag fluorophore options lack the tunability to allow combined methods of encoding in a single material. Here we report a design strategy to encode multilayer complexity in a family of heterometallic rare-earth metal-organic frameworks based on highly connected nonanuclear clusters. To impart both intricacy and security, a synergistic approach was implemented resulting in both overt (visible) and covert (near infrared, NIR) properties, with concomitant multi-emissive spectra and tunable luminescence lifetimes. Tag authentication is validated with a variety of orthogonal detection methodologies. Importantly, the effect induced by subtle compositional changes on intermetallic energy transfer, and thus on the resulting photophysical properties, is demonstrated. This strategy can be widely implemented to create a large library of highly complex, difficult to counterfeit optical tags.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Detecting Dwarf Galaxies Around NGC 55

In order to improve our understanding of the satellite populations of low-mass galaxies, the DECam Local Volume Exploration (DELVE) – DEEP Survey is performing a search for satellites around the isolated, low-mass galaxy, NGC 55. As part of this search, we characterize our dwarf galaxy detection sensitivity by injecting artificial dwarf galaxies into our data set and measuring the fraction that we can recover. Additionally, we inject and recover artificial dwarfs to test how the blending of resolved stars affects the detection of dwarf galaxies. We inject 650 artificial dwarfs across 26 DELVE-DEEP coadded images of the NGC 55 halo and use the software tool, Source Extractor, to perform source recovery. A dwarf-search pipeline is then run on our dwarf-injected catalogs, utilizing the photutils function, find peaks, and detections are recorded as a function of dwarf size and luminosity. Our results demonstrate that we are most sensitive to large, bright dwarf galaxies, and our sensitivity begins to decrease as we approach DELVE-DEEP’s detection limit or blending causes significant reductions in recovered magnitude. We also find that our results are hindered by the limitations of star-galaxy separation applied to distant, faint sources, which is possibly a consequence of the blending of small star clusters within dwarf galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Coordinated JWST Imaging of Three Distance Indicators in a Supernova Host Galaxy and an Estimate of the Tip of the Red Giant Branch Color Dependence

Boasting a 6.5 m mirror in space, JWST can increase by several times the number of supernovae (SNe) to which a redshift-independent distance has been measured with a precision distance indicator (e.g., tip of the red giant branch (TRGB) or Cepheids); the limited number of such SN calibrators currently dominates the uncertainty budget in distance ladder Hubble constant (H 0 ) experiments. JWST/NIRCAM imaging of the Virgo Cluster galaxy NGC 4536 is used here to preview JWST program GO-1995, which aims to measure H 0 using three stellar distance indicators (Cepheids, TRGB, and J-branch asymptotic giant branch/carbon stars). Each population of distance indicator was here successfully detected—with sufficiently large number statistics, well-measured fluxes, and characteristic distributions consistent with ingoing expectations—so as to confirm that we can acquire distances from each method precise to about 0.05 mag (statistical uncertainty only). We leverage overlapping Hubble Space Telescope imaging to identify TRGB stars, crossmatch them with the JWST photometry, and present a preliminary constraint on the slope of the TRGB's F115W versus (F115W – F444W) relation equal to -0.99 ± 0.16 mag mag -1 . This slope is consistent with prior slope measurements in the similar Two Micron All-Sky Survey J band, as well as with predictions from the BaSTI isochrone suite. We use the new TRGB slope estimate to flatten the 2D TRGB feature and measure a (blinded) TRGB distance relative to a set of fiducial TRGB colors, intended to represent the absolute fiducial calibrations expected from geometric anchors such as NGC 4258 and the Magellanic Clouds. In doing so, we empirically demonstrate that the TRGB can be used as a standardizable candle at the IR wavelengths accessible with JWST.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

The complex intracluster medium of Abell 1569 and its interaction with central radio galaxies

ABSTRACT We present the first in-depth study of X-ray emission from a nearby (z ∼ 0.0784) galaxy cluster Abell 1569 using an archival Chandra observation. A1569 consists of two unbound subclusters – a northern subcluster (A1569N) hosting a double-lobed radio galaxy 1233+169 at its centre, and a southern subcluster (A1569S) harbouring a wide-angle-tailed (WAT) radio source 1233+168. X-ray emission from A1569N and A1569S extends to a radius r ∼248 kpc and r ∼370 kpc, respectively, indicating that the two gas clumps are group-scale systems. The two subclusters have low X-ray luminosities (∼1042–43 erg s−1), average elemental abundances ∼1/4 Z⊙, low average temperatures (∼2 keV), and lack large (r ≳ 40–50 kpc) cool cores associated with the intracluster gas. We detect a pair of cavities coincident with the radio lobes of 1233+169 in A1569N. The total mechanical power associated with the cavity pair is an order of magnitude larger than the X-ray radiative loss in the cavity-occupied region, providing corroborating evidence for cavity-induced heating of the intragroup gas in A1569N. A1569S exhibits possible evidence for a small-scale cluster-subcluster merger, as indicated by its high central entropy, and the presence of local gas elongation and a density discontinuity in between the bent radio tails of 1233+168. The discontinuity is indicative of a weak merger shock with Mach Number, M ∼ 1.7. The most plausible geometry for the ongoing interaction is a head-on merger occurring between A1569S and a subcluster falling in from the west along the line bisecting the WAT tails.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Efficient Source of Shaped Single Photons Based on an Integrated Diamond Nanophotonic System

An efficient, scalable source of shaped single photons that can be directly integrated with optical fiber networks and quantum memories is at the heart of many protocols in quantum information science. We demonstrate a deterministic source of arbitrarily temporally shaped single-photon pulses with high efficiency [detection efficiency = 14.9 %] and purity [g (2) (0) = 0.0168] and streams of up to 11 consecutively detected single photons using a silicon-vacancy center in a highly directional fiber-integrated diamond nanophotonic cavity. Finally, combined with previously demonstrated spin-photon entangling gates, this system enables on-demand generation of streams of correlated photons such as cluster states and could be used as a resource for robust transmission and processing of quantum information.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

Regulation and Maturation of the Shewanella oneidensis Sulfite Reductase SirA

Shewanella oneidensis, a metal reducer and facultative anaerobe, expresses a large number of c-type cytochromes, many of which function as anaerobic reductases. All of these proteins contain the typical heme-binding motif CXXCH and require the Ccm proteins for maturation. Two c-type cytochrome reductases also possess atypical heme-binding sites, the NrfA nitrite reductase (CXXCK) and the SirA sulfte reductase (CX12NKGCH). S. oneidensis MR-1 encodes two cytochrome c synthetases (CcmF and SirE) and two apocytochrome c chaperones (CcmI and SirG). SirE located in the sir gene cluster is required for the maturation of SirA, but not NrfA. Here we show that maturation of SirA requires the combined function of the two apocytochrome c chaperones CcmI and SirG. Loss of either protein resulted in decreased sulfte reductase. Furthermore, SirA was not detected in a mutant that lacked both chaperones, perhaps due to misfolding or instability. These results suggest that CcmI interacts with SirEFG during SirA maturation, and with CcmF during maturation of NrfA. Additionally, we show that CRP regulates expression of sirA via the newly identifed transcriptional regulatory protein, SirR.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Preliminary Transfer Learning Results on Israel Data

In this preliminary report, we use publicly available data recorded in Israel to test and expand upon existing machine learning models for seismic-phase detection and arrival-time measurement. We downloaded 3-years of waveform data from Geofon, and cross referenced the waveforms to Israel bulletin picks (Schardong et al., 2021). The initial results using existing models directly generated ubiquitous false detections and that obscured detections of signals that are clearly visible in the waveforms. However, after applying transfer learning (tuning parameters in the existing ML models using one year of the Israel-network data), the results are encouraging, i.e. ML picks agree within a few tenths of a second with bulletin picks and the number of false detections is greatly reduced. The bulletin picks are a good starting point, but they cannot be considered ground-truth. To test potential improvement in picking using ML we would like to relocate the events using the ML picks to see if the events cluster more tightly at known mine locations. However, in order to constrain event locations, we need ML picks for the whole Israeli-Jordanian network, which requires waveforms that are not publicly available.

58 GEOSCIENCES↗
DOE OSTI2023

Constraints on the Intergalactic Magnetic Field Using Fermi-LAT and H.E.S.S. Blazar Observations

Magnetic fields in galaxies and galaxy clusters are believed to be the result of the amplification of intergalactic seed fields during the formation of large-scale structures in the universe. However, the origin, strength, and morphology of this intergalactic magnetic field (IGMF) remain unknown. Lower limits on (or indirect detection of) the IGMF can be obtained from observations of high-energy gamma rays from distant blazars. Gamma rays interact with the extragalactic background light to produce electron-positron pairs, which can subsequently initiate electromagnetic cascades. The gamma-ray signature of the cascade depends on the IGMF since it deflects the pairs. Here we report on a new search for this cascade emission using a combined data set from the Fermi Large Area Telescope and the High Energy Stereoscopic System. Using state-of-the-art Monte Carlo predictions for the cascade signal, our results place a lower limit on the IGMF of B > 7.1 × 10 -16 G for a coherence length of 1 Mpc even when blazar duty cycles as short as 10 yr are assumed. This improves on previous lower limits by a factor of 2. For longer duty cycles of 10 4 (10 7 ) yr, IGMF strengths below 1.8 × 10 -14 G (3.9 × 10 -14 G) are excluded, which rules out specific models for IGMF generation in the early universe.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Radio fossils, relics, and haloes in Abell 3266: cluster archaeology with ASKAP-EMU and the ATCA

ABSTRACT Abell 3266 is a massive and complex merging galaxy cluster that exhibits significant substructure. We present new, highly sensitive radio continuum observations of Abell 3266 performed with the Australian Square Kilometre Array Pathfinder (0.8–1.1 GHz) and the Australia Telescope Compact Array (1.1–3.1 GHz). These deep observations provide new insights into recently reported diffuse non-thermal phenomena associated with the intracluster medium, including a ‘wrong-way’ relic, a fossil plasma source, and an as-yet unclassified central diffuse ridge, which we reveal comprises the brightest part of a large-scale radio halo detected here for the first time. The ‘wrong-way’ relic is highly atypical of its kind: it exhibits many classical signatures of a shock-related radio relic, while at the same time exhibiting strong spectral steepening. While radio relics are generally consistent with a quasi-stationary shock scenario, the ‘wrong-way’ relic is not. We study the spectral properties of the fossil plasma source; it exhibits an ultrasteep and highly curved radio spectrum, indicating an extremely aged electron population. The larger scale radio halo fills much of the cluster centre, and presents a strong connection between the thermal and non-thermal components of the intracluster medium, along with evidence of substructure. Whether the central diffuse ridge is simply a brighter component of the halo, or a mini-halo, remains an open question. Finally, we study the morphological and spectral properties of the multiple complex radio galaxies in this cluster in unprecedented detail, tracing their evolutionary history.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Modeling features in the redshift-space halo power spectrum with perturbation theory

In this work, we study the ability of perturbative models with effective field theory contributions and infra-red resummation to model the redshift space clustering of biased tracers in models where the linear power spectrum has "features"- either imprinted during inflation or induced by non-standard expansion histories. We show that both Eulerian and Lagrangian perturbation theory are capable of reproducing the Fourier space two-point functions of halos up to the non-linear scale from a suite of 40963 particle N-body simulations. This is the first demonstration that perturbative models can accurately fit the redshift-space clustering of biased tracers in N-body simulations of such theories. By comparing different theoretical models and IR resummation schemes we assess the current theoretical uncertainty in predicting power spectra for models with features. Our results suggest that future surveys will be able to detect or tightly constrain features in the primordial spectrum below the one percent level across a wide range of scales.

redshift surveys↗