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DOE OSTI2019

Ex-Core Radiation Transport Modeling with VERA User Manual

It is important to be able to accurately predict the neutron flux outside the immediate reactor core for a variety of safety and material analyses. Monte Carlo radiation transport calculations are required to produce these high–fidelity ex-core responses. The Virtual Environment for Reactor Applications (VERA) provides the automated capability to launch independent Shift fixed-source and eigenvalue Monte Carlo (MC) calculations for user-specified state points during a standard Virtual Environment for Reactor Applications (VERA) calculation. VERA couples MPACT with COBRA-TF (CTF) to Shift to perform ex-core tallies for multiple state points concurrently, with each component capable of parallel execution on independent processor domains. In these ex-core calculations, MPACT is coupled to CTF and performs the in-core depletion and heat transfer calculation, followed by a fixed-source Shift transport calculation including ex-core regions to produce ex-core responses. The fission source, fuel pin temperatures, moderator temperature and density, boron concentration, and fuel pin depleted isotopic compositions can be transferred to Shift from the MPACT calculation. Specifically, VERA performs fluence calculations in the core barrel outward to the end of the pressure vessel and detector response calculations in ex-core detectors. It also performs the requested tallies in any user-defined ex-core regions. VERA takes advantage of the General Geometry (GG) package in Shift. This gives VERA the flexibility to explicitly model features outside the core barrel, including detailed vessel models, detectors, and power plant details. A very limited set of experimental and numerical benchmarks is available for ex-core simulation comparison. The Consortium for Advanced Simulation of Light Water Reactors has developed a set of ex-core benchmark problems to include as part of the VERA verification and validation set of problems. The ex-core capability in VERA has been tested on small representative assembly problems, multi-assembly problems, as well as quarter-core and full-core problems. VERA View has also been extended to visualize these vessel fluence results from VERA. This manual serves to present a guide to VERA users about the methodology behind ex-core calculations and the details of input, output, and analysis of results from these calculations. Details in this version of the manual are based on features in VERA 4.0.1.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

RAPTURE User's Manual

This User's Guide serves as a brief introduction to the RAPTURE radiation effects analysis code. It includes an overview of the input format, RAPTURE's error- and consistency-checking of the user-provided input files, the automatic-differentiation and convergce-checking schemes employed by RAPTURE, and the RAPTURE output files. A variety of example problems are included in this Guide which collectively demonstrate RAPTURE's current capabilities and provide a suite of test problems and template input files for the user. This Guide includes, for each problem, the problem description, RAPTURE input files, and comparison of the RAPTURE solution with solutiong generated with the Monte Carlo transport code ITS, the legacy deterministic code ADEPT, and, where possible, published experimental results. An appendix includes a description of all keywords and options in the RAPTURE input file.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

PETSc Users Manual (Rev. 3.13)

This manual describes the use of PETSc for the numerical solution of partial differential equations and related problems on high-performance computers. The Portable, Extensible Toolkit for Scientific Computation (PETSc) is a suite of data structures and routines that provide the building blocks for the implementation of large-scale application codes on parallel (and serial) computers. PETSc uses the MPI standard for all message-passing communication. PETSc includes an expanding suite of parallel linear solvers, nonlinear solvers, and time integrators that may be used in application codes written in Fortran, C, C++, and Python. PETSc provides many of the mechanisms needed within parallel application codes, such as parallel matrix and vector assembly routines. The library is organized hierarchically, enabling users to employ the level of abstraction that is most appropriate for a particular problem. By using techniques of object-oriented programming, PETSc provides enormous flexibility for users. PETSc is a sophisticated set of software tools; as such, for some users it initially has a much steeper learning curve than a simple subroutine library. In particular, for individuals without some computer science background, experience programming in C, C++, python, or Fortran and experience using a debugger such as gdb or dbx, it may require a significant amount of time to take full advantage of the features that enable efficient software use. However, the power of the PETSc design and the algorithms it incorporates may make the efficient implementation of many application codes simpler than \rolling them" yourself.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Water Network Tool for Resilience (WNTR). User Manual, Version 0.2.3

The Water Network Tool for Resilience (WNTR, pronounced winter) is a Python package designed to simulate and analyze resilience of water distribution networks. Here, a network refers to the collection of pipes, pumps, valves, junctions, tanks, and reservoirs that make up a water distribution system. WNTR has an application programming interface (API) that is flexible and allows for changes to the network structure and operations, along with simulation of disruptive incidents and recovery actions. WNTR is based upon EPANET, which is a tool to simulate the movement and fate of drinking water constituents within distribution systems. Users are encouraged to be familiar with the use of EPANET and/or should have background knowledge in hydraulics and pressurized pipe network modeling before using WNTR. EPANET has a graphical user interface that might be a useful tool to facilitate the visualization of the network and the associated analysis results. Information on EPANET can be found at https://www.epa.gov/water-research/epanet. WNTR is compatible with EPANET 2.00.12 [Ross00]. In addition, users should have experience using Python, including the installation of additional Python packages. General information on Python can be found at https://www.python.org/.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

User's Manual for the FE/NETL Onshore CO 2 EOR Cost Model, Version 1

This user's manual describes the conceptual and mathematical basis for the FE/NETL Onshore CO 2 EOR Cost Model (a Fortran program). The model performs a cash flow analysis to estimate the cost of implementing CO 2 EOR using supercritical CO 2 by incorporating oil field performance outputs for a pattern from the FE/NETL CO 2 Prophet Model (available on NETL's website along with its associated user's manuals under the Collection Name: FE/NETL CO 2 Prophet Model) and implementing patterns to develop an oil field for CO 2 EOR. The model calculates capital costs, operation and maintenance costs, and financing costs. The user’s manual also describes how to run the FE/NETL Onshore CO 2 EOR Cost Model, along with the model’s file structure, inputs and outputs. The FE/NETL Onshore CO 2 EOR Cost Model is available on NETL's website under the Collection Name: FE/NETL Onshore CO 2 EOR Cost Model.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

FECM/NETL CO 2 Transport Cost Model (2022): Description and User’s Manual

The FECM/NETL CO 2 Transport Cost Model (CO 2 _T_COM) is an Excel spreadsheet model that calculates the cost of transporting CO 2 from the beginning to the end of a pipeline. This document provides two main functions. First, the document describes the equations and algorithms that are used by the model to calculate technical quantities (such as the minimum inner pipe diameter needed to transport a user-specified CO 2 mass flow rate a specified distance) and engineering-economic quantities (such as capital costs, operating costs and cash flows). Second, the document is a user’s manual for the model that describes the procedures the user must follow to run the model. The document also describes input variables and output variables (i.e., results) for the model.

42 ENGINEERING↗

DOE OSTI2023

PETSc/TAO Users Manual (Rev. 3.19)

This manual describes the use of the Portable, Extensible Toolkit for Scientific Computation (PETSc) and the Toolkit for Advanced Optimization (TAO) for the numerical solution of partial differential equations and related problems on high-performance computers. PETSc/TAO is a suite of data structures and routines that provide the building blocks for the implementation of large-scale application codes on parallel (and serial) computers. PETSc uses the MPI standard for all distributed memory communication. PETSc/TAO includes a large suite of parallel linear solvers, nonlinear solvers, time integrators, and opti mization that may be used in application codes written in Fortran, C, C++, and Python (via petsc4py; see Getting Started). PETSc provides many of the mechanisms needed within parallel application codes, such as parallel matrix and vector assembly routines. The library is organized hierarchically, enabling users to employ the level of abstraction that is most appropriate for a particular problem. By using techniques of object-oriented programming, PETSc provides enormous flexibility for users. PETSc is a sophisticated set of software tools; as such, for some users it initially has a much steeper learning curve than packages such as MATLAB or a simple subroutine library. In particular, for individuals without some computer science background, experience programming in C, C++, python, or Fortran and experience using a debugger such as gdb or lldb, it may require a significant amount of time to take full advantage of the features that enable efficient software use. However, the power of the PETSc design and the algorithms it incorporates may make the efficient implementation of many application codes simpler than “rolling them” yourself. For many tasks a package such as MATLAB is often the best tool; PETSc is not intended for the classes of problems for which effective MATLAB code can be written. There are several packages, built on PETSc, that may satisfy your needs without requiring directly using PETSc. We recommend reviewing these packages functionality before starting to code directly with PETSc. PETSc can be used to provide a “MPI parallel linear solver” in an otherwise sequential, or OpenMP parallel code. This approach cannot provide extremely large improvements in the application time by utilizing large numbers of MPI processes but can still improve the performance. Certainly all parts of a previously sequential code need not be parallelized but the matrix generation portion must be parallelized to expect true scalability to large numbers of MPI processes. See PCMPI for details on how to utilize the PETSc MPI linear solver server. Since PETSc is under continued development, small changes in usage and calling sequences of routines will occur. PETSc has been supported for twenty-five years; see mailing list information on our website for information on contacting support.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Earth Filter Mathematica Toolbox V4 User’s Guide: Simplifying, Visualizing and Quick Modeling of All Fission Products from 60 Nuclear Sources

The Earth Filter Mathematica toolbox is a set of user-friendly routines that accurately calculate the ingrowth and decay of any of the 908 fission products for an infinite combination of sources over a large dynamic range and large time scales. This toolbox was developed by Dr. W. P. Brug at Los Alamos National Laboratory and eliminates the need for the user to define and solve differential equations by automatically scanning the ENDF-349 dataset and creating a complete set of differential equations (including delayed neutron branches to both the ground and metastable states) for every fission product. Additionally, this code allows the user to choose the data source for half-lives from several key references (i.e., TORI, IAEA, ENDF or NUDAT.) The complete set of ENDF-349 independent and cumulative fission yields for all 60 isotopic targets and 4 different neutron spectrums are included. This allows nearly any nuclear fission source to be accurately modeled as a linear combination of endpoint sources. The Earth Filter Toolbox has no limit as to the length of split list, and split lists of 5 or more endpoint sources can be quite common.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2023

FECM/NETL CO 2 Transport Cost Model (2023): Description and User’s Manual

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2020

User Access to Scientific Facilities via 5G: A Cyber Security Thought Experiment

5G is more than an over-the-air radio technology upgrade. It is a strategy to extend Mobile Network Operator service offerings beyond traditional voice, instant messaging and Internet access. 5G Mobile Network Operators will offer new telecommunication services that include enhanced guarantees of confidentiality, integrity and availability. How could such services change the way Science collaborations connect scientists to supercomputers and other scientific facilities? Current scientific collaborations implicitly trust cloud service providers to securely store and process data. The perceived risks of outsourcing Science data security are counterbalanced by assurances that cloud providers operate at a scale that allows them to implement security measures impractical for Science collaborations (e.g. continuous system administrator behavioral monitoring and strict individual separation of duties). If that is true for a cloud service provider like Amazon Web Services (2018 revenue: $25.7 billion), could it also be true for Mobile Network Operators like Verizon Wireless (2018 revenue: $91.7 billion) or AT&T Mobility (2018 revenue: $71.3 billion)? DOE Leadership Class supercomputer facility users currently access them from the public Internet via Secure Shell. The sponsors and operators of the supercomputer facilities have determined that the public Internet path between the Scientist’s Device and the Login Node does not natively provide enough confidentiality or integrity to protect those communications. Therefore, the facilities achieve additional confidentiality and integrity by requiring Secure Shell encryption across those untrusted network paths. Using 5G Network Slice technology, a Mobile Network Operator may offer communication services between supercomputer users and facilities that natively provide confidentiality and integrity guarantees. Sponsors and operators of supercomputer facilities may determine that these guarantees provide enough confidentiality and integrity to protect those communications. If so, a 5G Network Slice could replace an SSH session running over the public Internet. Finally, this use case could be extended to other Office of Science user facility access requirements. Consider microscopy instruments at (e.g.) the Center for Nanoscale Materials or the Environmental Molecular Sciences Laboratory. The embedded systems controlling such instruments may not always support encrypted network access technologies like SSH. 5G Network Slices may offer an alternative to current VPN or SSH tunneling techniques, with additional benefits like guaranteed minimum bandwidth.

5G↗

DOE OSTI2023

User Manual - HydraGNN: Distributed PyTorch Implementation of Multi-Headed Graph Convolutional Neural Networks

This document serves as user manual for HydraGNN, a scalable graph neural network (GNN) architecture that allows for a simultaneous prediction of multiple target properties using multi-task learning (MTL). The HydraGNN architecture is constructed by successive superposition of three different sets of layers. The first set is made of message-passing layers to exchange information across nodes in the graph and use this to update the nodal features. The second set is made of global pooling layers that aggregate information from all the nodes in the graph and map it into a scalar, and is needed only for global target properties that are related to the entire graph. The third set of layers is dedicated to the implementation of MTL, which is enabled by forking of the architecture into separate heads, each one of them dedicated to the predictive task of one specific target property. Through an object-oriented programming paradigm, HydraGNN is templated over different message-passing policies, which allows for a user-friendly hyperparameter study to assess the sensitivity of the predictive performance of the HydraGNN architecture on a specific dataset with respect to the choice of the message-passing policy. The object-oriented paradigm used by HydraGNN also allows for a user-friendly inclusion of newly developed message passing policies within the existing framework. HydraGNN supports distributed computing capabilities for scalable data reading and scalable training on leadership-class supercomputers.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Clear Sky Toolkit: Decision Support User Guide

The Clear Sky Decision Support Template is a Microsoft Excel-based resource that enables users to screen and prioritize critical facilities for the addition of solar + storage. The Decision Support Template consolidates and streamlines the most relevant resources from the emergency management discipline, the electric utility sector, and national energy research institutions to assist in further site analysis and decision-making. The Decision Support Template is intended for use by local government and private sector decision-makers who aim to mitigate the effects of power outages on critical infrastructure, understand the potential for deploying photovoltaic (PV) and storage solutions on critical facilities, and align emergency management planning processes and utility needs with community resilience objectives. The Decision Support Template is divided into five modules that provide a structured, step-by-step approach users can follow and apply to unique circumstances. This process guides a more thorough and accurate assessment of a site's potential to accommodate a solar + storage system, provide grid benefits to utilities, and support community resilience and disaster mitigation for the broader region. After identifying potentially viable and preferred sites for solar + storage using the Decision Support Template, users should conduct a more detailed evaluation and consultation with a solar professional.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2024

User Stories for PV Operations and Maintenance: Findings from the 2024 PVPMC Workshop

At the 2024 Photovoltaic (PV) Performance Modeling Workshop we collected user stories related to PV system monitoring, analytics, and operations and maintenance (O&M). In this context, user stories describe challenges with current practices and tools or imagining opportunities for improvements. From these user stories, we identified several near-term opportunities to improve photovoltaic system monitoring, analytics and O&M.

14 SOLAR ENERGY↗

DOE OSTI2023

Automated Credibility Assessments of User Features in Scientific Software

Scientific software (SciSoft) is complex, often containing a mixture of production capabilities co-mingled with features under active research and development. Furthermore, SciSoft is often developed over decades by non-computer scientists who may not have a strong background in or prioritize software architecture design, testing, and quality (e.g., test coverage). These conditions lead to difficulty in understanding which software components or functions implement what user-facing features and therefore those features’ software quality pedigree. This lack of understanding poses challenges in assessing readiness and credibility of user features, and often relies on a SciSoft subject matter expert’s (SME) laborious investigation and assertion. This final report of a one-year Computing and Information Sciences Lab Directed Research and Development project presents a general framework for modeling SciSoft architecture as a direct relationship between user features and the software components/functions that implement them. Our approach leverages automated labeling of the SciSoft’s regression test suite and employs machine learning algorithms to construct the architecture model. We demonstrate this framework on the Solid Mechanics component of the SIERRA multi-physics engineering analysis suite developed at Sandia National Laboratories.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Scribe3D© is an application designed to allow users to develop risk threat scenarios on a 3D image of a facility/location of the users choosing. Once the facility/terrain is loaded, entities such as personnel, vehicles (ground and air), and structures/objects can be added. Then the user can make the entities move around the facility/terrain. Responder and Adversary forces can be outfitted with weapons and move from place to place on foot or in vehicles. In Scribe3D©, once the entities are identified, they can be moved to visualize realistic scenario situations by using a suite of tools to enhance decision making and scenario development. This manual can guide you through setting up and editing all aspects of Scribe3D© and guide you to the creation of a Scenario Exercise.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Bayesian Attack Model (BAM) User Story

This document presents a user story for the Bayesian Attack Model (BAM) tool designed to aggregate and analyze cyber-attack observables for operational technology (OT) systems. BAM aims to empower cybersecurity analysts by providing a streamlined interface for collecting observable data from various sources, enabling real-time analysis of potential adversary activity. By enhancing the response capabilities of security teams, BAM facilitates risk-informed decision-making and improves organizational security posture. This user story outlines the key functionalities, user interactions, and requirements necessary to successfully integrate BAM with other security information and event management (SIEM) technology and cybersecurity operations centers (CSOCs).

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Hydropower Biological Evaluation Toolset (HBET) Version 3.0: User Guide

The Hydropower Biological Evaluation Tools (HBET) software package, developed by Pacific Northwest National Laboratory (PNNL), is designed to assemble, organize, and process data collected by Sensor Fish and live fish. HBET enable users to characterize the hydraulic conditions of hydropower structures and estimate fish injury and mortality rates from various stressors. Future updates of the software may support other technologies, such as bead tracking in physical models and computational fluid dynamics. The HBET program can be customized to analyze different hydraulic applications, including turbines, spillways, weirs, pumped storage, and other user-defined functions, and therefore, help researchers, turbine designers, hydropower operators, and regulators better evaluate hydropower structures regarding their environmental sustainability and cost-effectiveness. Added content to the user guide about the new feature for predicting absolute injury rates.

13 HYDRO ENERGY↗

DOE OSTI2026

REopt Federal User Support Session Two

This presentation is for FEMP's second user support session for federal REopt users. These sessions cover topics such as: overviews of REopt capabilities, hands-on REopt trainings and demonstrations, discussion and feedback about the tool and user support, federal REopt case studies and success stories, and links to REopt resources. This particular session covers discussion about federal onsite energy projects and challenges, using REopt to evaluate air-source and geothermal heat pumps, a federal success story about using REopt for heat pump analysis, a summary of available resources, and open question and answer session.

14 SOLAR ENERGY↗