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DOE OSTI2019

Eigenparticles: characterizing particles using eigenfaces

The shape characteristics of particles have a pinnacle role in microsopic and macroscopic features of a system. Several studies have highlighted the need for considering deviations from a spherical representation of particles for accurate modeling of granular and multiphase flow systems. Using a shape factor, sphericity or roundness parameter alone is proven to be inadequate to capture the physical phenomena. In the present study we propose a novel metric based on the pattern recognition method Eigenfaces, coining the technique ‘Eigenparticles’. Using this technique we create a single statistical distribution of basis shapes to describe the morphological composition. The proposed technique is successfully validated with test shapes and applied to real particles. As a result, when compared with a state-of-the-art Fourier based method, ‘Eigenparticles’ performs favorably, clearly distinguishing the different particles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

Distributed non-negative matrix factorization with determination of the number of latent features

The holistic analysis and understanding of the latent (that is, not directly observable) variables and patterns buried in large datasets is crucial for data-driven science, decision making and emergency response. Such exploratory analyses require devising unsupervised learning methods for data mining and extraction of the latent features, and non-negative matrix factorization (NMF) is one of the prominent such methods. NMF is based on compute-intense non-convex constrained minimization, which, for large datasets requires fast and distributed algorithms. However, current parallel implementations of NMF fail to estimate the number of latent features. In practice, identifying these features is both difficult and significant for pattern recognition and latent feature analysis, especially for large dense matrices. Here, we introduce a distributed NMF algorithm coupled with distributed custom clustering followed by a stability analysis on dense data, which we call DnMFk, to determine the number of latent variables. The results on synthetic data and the classical Swimmer data set demonstrate the accuracy of model determination while scaling nearly linearly across multiple processors for large data. Further, we employ DnMFk to determine the number of hidden features from a terabyte matrix.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2017

Multiscale Persistent Functions for Biomolecular Structure Characterization

Here in this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions (MRFs) with persistent homology analysis, so as to construct a series of multiscale persistent functions, particularly multiscale persistent entropies, for structure characterization. To clarify the fundamental idea of our method, the multiscale persistent entropy (MPE) model is discussed in great detail. Mathematically, unlike the previous persistent entropy (Chintakunta et al. in Pattern Recognit 48(2):391–401, 2015; Merelli et al. in Entropy 17(10):6872–6892, 2015; Rucco et al. in: Proceedings of ECCS 2014, Springer, pp 117–128, 2016), a special resolution parameter is incorporated into our model. Various scales can be achieved by tuning its value. Physically, our MPE can be used in conformational entropy evaluation. More specifically, it is found that our method incorporates in it a natural classification scheme. This is achieved through a density filtration of an MRF built from angular distributions. To further validate our model, a systematical comparison with the traditional entropy evaluation model is done. Additionally, it is found that our model is able to preserve the intrinsic topological features of biomolecular data much better than traditional approaches, particularly for resolutions in the intermediate range. Moreover, by comparing with traditional entropies from various grid sizes, bond angle-based methods and a persistent homology-based support vector machine method (Cang et al. in Mol Based Math Biol 3:140–162, 2015), we find that our MPE method gives the best results in terms of average true positive rate in a classic protein structure classification test. More interestingly, all-alpha and all-beta protein classes can be clearly separated from each other with zero error only in our model. Finally, a special protein structure index (PSI) is proposed, for the first time, to describe the “regularity” of protein structures. Basically, a protein structure is deemed as regular if it has a consistent and orderly configuration. Our PSI model is tested on a database of 110 proteins; we find that structures with larger portions of loops and intrinsically disorder regions are always associated with larger PSI, meaning an irregular configuration, while proteins with larger portions of secondary structures, i.e., alpha-helix or beta-sheet, have smaller PSI. Essentially, PSI can be used to describe the “regularity” information in any systems.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2016

IDEAL: Images Across Domains, Experiments, Algorithms and Learning

Research across science domains is increasingly reliant on image-centric data. Software tools are in high demand to uncover relevant, but hidden, information in digital images, such as those coming from faster next generation high-throughput imaging platforms. The challenge is to analyze the data torrent generated by the advanced instruments efficiently, and provide insights such as measurements for decision-making. In this article, we overview work performed by an interdisciplinary team of computational and materials scientists, aimed at designing software applications and coordinating research efforts connecting (1) emerging algorithms for dealing with large and complex datasets; (2) data analysis methods with emphasis in pattern recognition and machine learning; and (3) advances in evolving computer architectures. Engineering tools around these efforts accelerate the analyses of image-based recordings, improve reusability and reproducibility, scale scientific procedures by reducing time between experiments, increase efficiency, and open opportunities for more users of the imaging facilities. This paper describes our algorithms and software tools, showing results across image scales, demonstrating how our framework plays a role in improving image understanding for quality control of existent materials and discovery of new compounds.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

A Siamese CNN + KNN-Based Classification Framework for Non-intrusive Load Monitoring

Through the development of smart grids, programs such as demand side response, have been presented as auxiliary services to the real-time operation of distributed networks. In order to provide consumers information on their energy consumption, so that a modulation in consumption is possible, non-intrusive load monitoring has been introduced as an solution to this pattern recognition problem. Non-intrusive load monitoring enables the modeling of electrical loads connected to the low-voltage system, considering only a single measurement point. Presented state-of-the-art solutions though, consider availability of data as well as representation of all possible classes of the environment. This is of course a most conservative hypothesis, since in real-life applications availability of such data is much difficult, as well as the dynamic behavior of models is implicitly evolving in time. Here, a framework that uses neural Siamese networks with k-nearest neighbor clustering is presented toward non-intrusive load monitoring. Online learning feature is implemented, which relaxes the hypothesis of data requirements as well addresses the evolving nature of load profile. k-nearest clustering allows nonlinear characteristic space modelling. Test results using synthetics and real-life data show that the solution, besides obtaining a good generalizability in the classification, also obtained results with an accuracy of 95.77%.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2021

Quantum computing based hybrid deep learning for fault diagnosis in electrical power systems

Quantum computing (QC) and deep learning have shown promise of supporting transformative advances and have recently gained popularity in a wide range of areas. Here, this paper proposes a hybrid QC-based deep learning framework for fault diagnosis of electrical power systems that combine the feature extraction capabilities of conditional restricted Boltzmann machine with an efficient classification of deep networks. Computational challenges stemming from the complexities of such deep learning models are overcome by QC-based training methodologies that effectively leverage the complementary strengths of quantum assisted learning and classical training techniques. The proposed hybrid QC-based deep learning framework is tested on a simulated electrical power system with 30 buses and wide variations of substation and transmission line faults, to demonstrate the framework’s applicability, efficiency, and generalization capabilities. High computational efficiency is enjoyed by the proposed hybrid approach in terms of computational effort required and quality of diagnosis performance over classical training methods. In addition, superior and reliable fault diagnosis performance with faster response time is achieved over state-of-the-art pattern recognition methods based on artificial neural networks (ANN) and decision trees (DT).

42 ENGINEERING↗

DOE OSTI2018

NMR-based serum metabolomics study reveals a innovative diagnostic model for missed abortion

A missed abortion (MA) is an in-utero death of the embryo or fetus before the 20th week of gestation with retained products of conception. In order to discover novel biomarkers for MA, a {sup 1}H NMR spectroscopy-based metabolomics approach was applied to detect human MA serum metabolic profiles. Serum samples were obtained from patients with MA (n = 15) and healthy controls (n = 9) for study. The NOESYPR1D spectrum combined with multi-variate pattern recognition analysis was used to cluster the groups and establish a disease-specific metabolites phenotype. Principal component analysis (PCA) and orthogonal partial least-squares discriminant analysis (OPLS-DA) models were capable of distinguishing MA patients from healthy subjects. The results revealed that 24 metabolites altered in MA patients compared with the control population. Metabolomic pathway analysis demonstrated that alanine, aspartate and glutamate metabolism, citrate cycle (TCA cycle), taurine and hypotaurine metabolism were significantly altered in MA. The results indicated that serum NMR-based metabolomic profiling method is sensitive and specific enough to distinguish MA and from healthy controls, this method could be developed as a clinically useful diagnostic tool for MA. The finding from the MA serum metabolic profiling shed a new light on further understanding of MA disease mechanisms.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2018

Vaccine adjuvant ARNAX promotes mucosal IgA production in influenza HA vaccination

Adjuvant stimulates pattern-recognition receptors (PRRs) expressed by dendritic cells, which causes immune-enhancing of T lymphocytes. Adjuvant also induces innate immune response in whole-body cells via PRRs to evoke cytokinemia. A cytokine-mediated immune response is important for the systemic protection of a host from microbial infections. Using an influenza subcomponent vaccine in a mouse model, we intranasally administered a TLR3-specific adjuvant ARNAX + HA split vaccine to mice. ARNAX efficiently induced mucosal IgA and systemic IgG production by nasal drop. Moreover, ARNAX + HA simultaneously induced CD8 and CD4 T cell activation. We have previously shown that ARNAX does not induce harmful systemic cytokine production. Thus, our findings indicate that the ARNAX + HA vaccine is a harmless prophylactic vaccine for flu that induces HA-specific T cell activation and IgA/IgG production. These results suggested that ARNAX + antigen enhanced the immune response without inducing inflammatory toxicity for vaccination against infectious diseases.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2016

Dynamic analysis environment for nuclear forensic analyses

We report a Dynamic Analysis Environment (DAE) software package is introduced to facilitate group inclusion/exclusion method testing, evaluation and comparison for pre-detonation nuclear forensics applications. Employing DAE, the multivariate signatures of a questioned material can be compared to the signatures for different, known groups, enabling the linking of the questioned material to its potential process, location, or fabrication facility. Advantages of using DAE for group inclusion/exclusion include built-in query tools for retrieving data of interest from a database, the recording and documentation of all analysis steps, a clear visualization of the analysis steps intelligible to a non-expert, and the ability to integrate analysis tools developed in different programming languages. Two group inclusion/exclusion methods are implemented in DAE: principal component analysis, a parametric feature extraction method, and k nearest neighbors, a nonparametric pattern recognition method. Spent Fuel Isotopic Composition (SFCOMPO), an open source international database of isotopic compositions for spent nuclear fuels (SNF) from 14 reactors, is used to construct PCA and KNN models for known reactor groups, and 20 simulated SNF samples are utilized in evaluating the performance of these group inclusion/exclusion models. For all 20 simulated samples, PCA in conjunction with the Q statistic correctly excludes a large percentage of reactor groups and correctly includes the true reactor of origination. As a result, employing KNN, 14 of the 20 simulated samples are classified to their true reactor of origination.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Power quality disturbances diagnosis: A 2D densely connected convolutional network framework

The fast and accurate diagnosis of power quality disturbances (PQD) aids in avoiding shutdowns and unnecessary procedures, concerning electric energy distribution systems. As such, a number of techniques have been tested and applied in order to reach this objective. Majority of the techniques applied are two-step based. On the first step, power quality disturbances features are extracted. Second step, considering features extracted, disturbance classification is implemented. Recently, relevant literature has presented data-driven signal processing-based approaches, as deep convolutional neural networks (DCNN), which can implement both processing steps while providing automated recognition of patterns and outliers in data. However, not considered by state-of-art, power quality disturbances are evolving in nature, while all possible regularities might not be represented in the dataset. In this work a 2 Dimension Densely Connected Convolutional Network (2D-DenseNet) framework is presented. Further, a case study with synthetic disturbance events are analyzed. Easy-to-implement formulation, built on the 2D-DenseNet, without hard-to-design parameters, highlight potential aspects for real-life implementation.

42 ENGINEERING↗

DOE OSTI2022

Post-hazard condition assessment of nuclear piping-equipment systems: Novel approach to feature extraction and deep learning

Over the past decade, the use of artificial intelligence techniques in the field of health-monitoring has gained significant interest, especially for structures such as building and bridges. However, applications to industrial systems such as equipment-piping systems in nuclear plants have not been explored. Here, in this paper, it is shown that the existing techniques developed for buildings and bridges cannot be extended directly to equipment-piping systems as the response of such systems is governed by multiple localized modes unlike that in buildings and bridges. This paper proposes a new approach that consists of three key aspects: (i) a novel vector of degradation-sensitive features extracted from measured data, (ii) using a deep Artificial Neural Network (ANN) for diagnosis of degradation location and degradation severity, and (iii) consideration of uncertainty in degradation severity when training the ANN. Degradation in piping-equipment systems can occur due to flow-accelerated erosion and corrosion. These locations can potentially exhibit damage such as localized yielding or initiation of cracking due to an external event such as an earthquake. Moreover, such locations can at times go undetected by current inspection techniques. Therefore, a robust framework is needed for detection of degradation after a seismic event. This manuscript proposes a proof-of-concept framework, which utilizes data collected from sensors to generate a deep ANN database for predicting degraded locations and severity in a piping-equipment system. Degradation severity is classified as minor, moderate, and severe. In the suggested methodology, a novel vector of degradation-sensitive features is extracted from the sensor data to train the ANN. A simple piping-equipment system is selected to demonstrate feature extraction as a means to simplify pattern recognition, explore the design and parameters of an ANN, and develop a sensor placement strategy. The effectiveness of the proposed framework is demonstrated on a realistic primary safety system of a two-loop nuclear reactor. It is shown that the proposed post-hazard condition assessment framework is able to detect degraded locations along with the severity levels, including minor degradation, with considerably higher accuracy.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2019

A deep learning approach to anomaly detection in geological carbon sequestration sites using pressure measurements

Carbon capture and storage (CCS) has been extensively investigated as a potential engineering measure to reduce anthropogenic carbon emission to the atmosphere. Real-time monitoring of the safety and integrity of carbon storage reservoirs is a critical aspect of any commercial-scale CCS deployment. Pressure-based sensing is cost effective, suitable for real-time monitoring, and scalable to large monitoring networks. However, questions remain on how to best harness intelligent information from the high-frequency pressure monitoring sensors to support real-time decisions. Here this work presents a deep-learning-based framework for analyzing and detecting anomalies in pressure data streams by using a convolutional long short-term memory (ConvLSTM) neural network model, which allows for the fusion of both static and dynamic reservoir data. In ConvLSTM, the convolutional neural network (CNN) is used for spatial pattern mining and the LSTM is used for temporal pattern recognition. The performance of the ConvLSTM model for real-time anomaly detection is demonstrated using a set of pressure monitoring data collected from Cranfield, Mississippi, an active enhanced-oil-recovery field. The anomaly detection model is trained using bottom-hole pressure data acquired from the base experiment (without leak event) and then tested on pressure data collected during a series of controlled CO 2 release experiments (with artificially created leak events). Results show that the ConvLSTM neural network model successfully detected anomalies in the pressure time series obtained from the controlled release experiments. Inclusion of static information into the model further improves the robustness of ConvLSTM.

13 HYDRO ENERGY↗

DOE OSTI2018

A comparison of machine learning methods for automated gamma-ray spectroscopy

Pattern recognition algorithms such as artificial neural networks (NNs) and convolution neural networks (CNNs) are prime candidates to perform automated gamma-ray spectroscopy. The way these models train and operate mimic how trained spectroscopists identify spectra. These models have shown promise in identifying gamma-ray spectra with large calibration drift and unknown background radiation fields. In this work, two algorithms for mixtures of radioisotopes based on NN and CNN are presented and evaluated.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2019

Single photon detection with the multi-anode CLAS12 RICH detector

Recently, the first module of the hybrid-optics large-area CLAS12 RICH at JLab has been put into operation using for the first time the well known Hamamatsu H8500 MAPMT and the new single-photon dedicated H12700, for a total of about 400 MAPMTs and 25000 pixels. The photon detector must efficiently detect single photons in the visible and near-UV light region, provide a fast response for background rejection and pattern recognition, and have a spatial resolution of less than 1 cm over an area of ≈1 m 2 . Each front-end readout unit is composed of three electronic boards with specific tasks directly connected to groups of 2 or 3 sensors. The core of the readout is composed of MAROC3 and FPGA chips. The MAROC3 chip is able to discriminate the 64 signals from one MAPMT and to produce 64 corresponding binary outputs with 100% efficiency starting at a small fraction of the single-photon signal, while the FPGA chip provides 1 ns TDC capability with 8 μs maximum latency and acts as a DAQ controller. The system is created to be almost dead-time free at the foreseen 20 kHz CLAS12 trigger rate. The best working conditions for single-photon detection have been studied at laser stands, test beams, and with the JLab electron beam data. A report of the photon detector preparation, commissioning and operation is here discussed.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Automated co-adding and energy calibration of large array microcalorimeter data with zero sample knowledge

State-of-the-art microcalorimeter spectrometers now contain large detector arrays with hundreds of individual pixels. Each individual pixel outputs a unique and non-linear response with respect to deposited energy. This work describes a pattern-recognition algorithm to combine these responses into a single energy-calibrated histogram, referred to as co-adding pixels. Photo-peaks from different pixels are matched together based upon how well the match aligns the centroids and heights of neighboring peaks. This usually results in around 100 co-adding calibration points from 30 to 300 keV for a several day acquisition of plutonium items with masses between 0.5 and 10 grams. An additional algorithm energy-calibrates this co-added spectrum using the fluoresced K x-ray emissions from a tantalum absorber and inherent x-ray escape peaks from the tin absorbers. Both algorithms operate without knowledge of the source and are fully automated. This work presents results from the acquisitions of high and low burnup plutonium, 10% enriched uranium, a 153 Gd calibration source, and a 57 Co+ 166m Ho calibration source. In all measurements, resolution defined as the full-width at half-maximum (FWHM) of photo-peaks is preserved between the individual pixel and co-added spectra at around 65 eV for incident photon energies between 60 and 208 keV. The energy calibration algorithm is approximate and yields a calibration curve off by an average of around 200 eV for incident photon energies between 60 and 208 keV.

47 OTHER INSTRUMENTATION↗

DOE OSTI2023

The large-area hybrid-optics CLAS12 RICH: First years of data-taking

The CLAS12 deep-inelastic scattering experiment at the upgraded 12 GeV continuous electron beam accelerator facility of Jefferson Lab conjugates luminosity and wide acceptance to study the 3D nucleon structure in the yet poorly explored valence region, and to perform precision measurements in hadron spectroscopy. A large area ring-imaging Cherenkov detector has been designed to achieve the required hadron identification in the momentum range from 3 GeV/c to 8 GeV/c, with the kaon rate about one order of magnitude lower than the rate of pions and protons. The adopted solution comprises aerogel radiator and composite mirrors in a novel hybrid optics design, where either direct or reflected light could be imaged in a high-packed and high-segmented photon detector. The first RICH module was assembled during the second half of 2017 and installed at the beginning of January 2018, in time for the start of the experiment. The second RICH module, planned with the goal to be ready for the beginning of the operation with polarized targets, has been timely built despite the complications caused by the pandemic crisis and successfully installed in June 2022. Finally, the detector performance is here discussed with emphasis on the operation and stability during the data-taking, calibration and alignment procedures, reconstruction and pattern recognition algorithms, and particle identification.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2024

Performance of a triple-GEM detector with capacitive-sharing 3-coordinate (X–Y–U)-strip anode readout

The concept of capacitive-sharing readout, described in detail in a previous study, offers the possibility for the development of high-performance three-coordinates (X--Y--U)-strip readout for Micro Pattern Gaseous Detectors (MPGDs) using simple standard PCB fabrication techniques. Capacitive-sharing (X--Y--U)-strip readout allows simultaneous measurement of the Cartesian coordinates x and y of the position of the particles together with a third coordinate u along the diagonal axis in a single readout PCB. This provides a powerful tool to address multiple-hit ambiguity and enable pattern recognition capabilities in moderate particle flux environment of collider or fixed target experiments in high energy physics HEP) and nuclear physics (NP). We present in this paper the performance of a 10 cm × 10 cm triple-GEM detector with capacitive-sharing (X--Y--U)-strip anode readout. Spatial resolutions of the order of $\sigma_{x}^{res}$ = 71.6 $\pm$ 0.8 $\mu$m for X-strips, $\sigma_{y}^{res}$ = 56.2 $\pm$ 0.9 $\mu$m for Y-strips and $\sigma_{u}^{res}$ = 75.2 $\pm$ 0.9 $\mu$m for U-strips have been obtained at a beam test at Thomas Jefferson National Accelerator Facility (Jefferson Lab). Modifications of the readout design of future prototypes to improve the spatial resolution and challenges in scaling to large-area MPGDs are discussed.

(X-Y-U) strip↗

DOE OSTI2019

Classify QCD phase transition with deep learning

The state-of-the-art pattern recognition method in machine learning (deep convolution neural network) is used to identify the equation of state (EoS) employed in the relativistic hydrodynamic simulations of heavy ion collisions. High-level correlations of particle spectra in transverse momentum and azimuthal angle learned by the network act as an effective EoS-meter in deciphering the nature of the phase transition in QCD. The EoS-meter is model independent and insensitive to other simulation inputs including the initial conditions and shear viscosity for hydrodynamic simulations. Through this study we demonstrate that there is a traceable encoder of the dynamical information from the phase structure that survives the evolution and exists in the final snapshot of heavy ion collisions and one can exclusively and effectively decode these information from the highly complex final output with machine learning when traditional methods fail. Besides the deep neural network, the performance of traditional machine learning classifiers are also provided.

74 ATOMIC AND MOLECULAR PHYSICS↗