A soil-air temperature model to determine the start of season phenology of deciduous forests
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Agriculture↗
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Fungal community and functional responses to soil warming are greater than for soil nitrogen enrichment
Soil fungi are key regulators of forest carbon cycling and their responses to global change have effects that ripple throughout ecosystems. Global changes are expected to push many fungi beyond their environmental niches, but there are relatively few studies involving multiple, simultaneous global change factors. Here, we studied soil fungal diversity, community composition, co-occurrence patterns, and decomposition gene responses to 10 years of soil warming and nitrogen addition, alone and in combination. We specifically examined whether there were fungal community characteristics that could explain changes in soil carbon storage and organic matter chemistry in chronically warmed and fertilized soil. We found that fungal communities in warmed soils are less diverse and shift in composition. Warming also favored hyperdominance by a few mycorrhizal fungal species and lowered manganese peroxidase but increased hydrolytic enzyme encoding gene potentials. Nitrogen addition did not significantly affect fungal community composition but, like warming, did reduce fungal diversity and favored overdominance by a unique set of mycorrhizal taxa. Warming alone and in combination with nitrogen addition also reduced negative but increased positive fungal co-occurrence probabilities, promoting species coexistence. Negative fungal co-occurrence was positively correlated to soil carbon content, while the proportion of fungal hydrolytic enzyme encoding genes was negatively correlated with soil carbon content. This may reflect fungal life history trade-offs between competition (e.g., reduced negative co-occurrence) and resource acquisition (e.g., higher abundance of hydrolytic enzyme encoding genes) with implications for carbon storage.
54 ENVIRONMENTAL SCIENCES↗
Canadian Experiment for Soil Moisture in 2010 (CanEX-SM10): Overview and Preliminary Results
The Canadian Experiment for Soil Moisture in 2010 (CanEx-SM10) was carried out in Saskatchewan, Canada from 31 May to 16 June, 2010. Its main objective was to contribute to Soil Moisture and Ocean salinity (SMOS) mission validation and the pre-launch assessment of Soil Moisture and Active and Passive (SMAP) mission. During CanEx-SM10, SMOS data as well as other passive and active microwave measurements were collected by both airborne and satellite platforms. Ground-based measurements of soil (moisture, temperature, roughness, bulk density) and vegetation characteristics (Leaf Area Index, biomass, vegetation height) were conducted close in time to the airborne and satellite acquisitions. Besides, two ground-based in situ networks provided continuous measurements of meteorological conditions and soil moisture and soil temperature profiles. Two sites, each covering 33 km x 71 km (about two SMOS pixels) were selected in agricultural and boreal forested areas in order to provide contrasting soil and vegetation conditions. This paper describes the measurement strategy, provides an overview of the data sets and presents preliminary results. Over the agricultural area, the airborne L-band brightness temperatures matched up well with the SMOS data. The Radio frequency interference (RFI) observed in both SMOS and the airborne L-band radiometer data exhibited spatial and temporal variability and polarization dependency. The temporal evolution of SMOS soil moisture product matched that observed with the ground data, but the absolute soil moisture estimates did not meet the accuracy requirements (0.04 m3/m3) of the SMOS mission. AMSR-E soil moisture estimates are more closely correlated with measured soil moisture.
Magagi, Ramata↗
Estimating forest productivity with Thematic Mapper and biogeographical data
Spectral data from the Landsat Thematic Mapper (TM) on three forest exosystems (the southern Illinois, the Great Smoky Mountains regions in Tennessee and North Carolina, and the central Adirondack Mountains in New York) were used in conjunction with ground-collected measures of forest productivity and such information as the area's slope, aspect, elevation, and soil and vegetation types, to develop models of regional forest productivity. It is shown that the models developed may be used to estimate the productivity of a region with a high degree of confidence, but that the reliability of single-pixel estimates is poor. The characteristics of a given ecosystem determine which spectral values are most closely related to forest productivity. Thus, mid-IR, NIR, and visible bands are most significant in Illinois and New York, while the thermal band is relatively more important in the Smokies.
Cook, Elizabeth A.↗
Does manganese influence grass litter decomposition on a Hawaiian rainfall gradient?
Plant litter is a well-defined pool of organic matter (OM) in which the influence of manganese (Mn) on decomposition (both decomposition rate and the mix of compounds ultimately transferred to soil OM) has been clearly demonstrated in temperate forests. However, no similar study exists on grasslands and the effect of foliar Mn versus soil-derived Mn on litter decomposition is poorly known. We used a 5-month and 12-month field, and 10-month laboratory experiments to evaluate litter decomposition on the Kohala rainfall gradient (Island of Hawai‘i) in areas with different foliar and soil Mn abundances, and on which a single plant species (Pennisetum clandestinum) dominates primary production and the litter pool. The chemical imaging analyses of decomposed litter revealed that Mn 2+ oxidized to Mn 3+ and Mn 4+ on grass litter during decompositions—hallmarks of Mn-driven litter oxidation. However, these transformations and Mn abundance did not predict greater litter mass loss through decomposition. These observations demonstrate that the importance of Mn to an ecosystem’s C cycle does not rely solely on the metal’s abundance and availability.
54 ENVIRONMENTAL SCIENCES↗
Haiti Agriculture II: Evaluating the Success of Reforestation Practices in Haiti
The Caribbean country of Haiti has an extensive history of deforestation and environmental degradation stemming from French colonization. Over the past 33 years, the Haiti Reforestation Partnership (HRP) and their partners, Comprehensive Development Program (CODEP), have planted approximately 15.52 million trees. However, these efforts lacked scientific guidance to ensure successful forest stand survival. The NASA DEVELOP team partnered with the HRP to create a habitat suitability model (HSM) by using PlanetScope and Sentinel-2 Multispectral Instrument (MSI) imagery. The team also incorporated Landsat 8 and 9 OLI surface temperature, Centre National de L’Information Geo-Spatiale (CNIGS) Airborne Lidar, and ancillary datasets to analyze areas suitable for future reforestation efforts. The habitat model suggested locations with higher forest stand survival based on topography, soil health, climate, and feasibility to access suggested locations. We confirmed the HSM through a cross-analyzation of high enhanced vegetation index (EVI) values. Areas with lower EVI values and higher suitability based on the HSM were suggested for future planting as they lack well-established forest stands but have optimal conditions for growth. Through the creation of the HSM, the team provided the HRP with static maps of high suitability, a 3D printed elevation model, and a guidebook for animators. Additionally, the team provided a structured video highlighting the HRP’s efforts. Effective reforestation and better forest stand survival would help to achieve the goal of securing community food security. This would also serve as a guide to expand planting efforts into other locations and communities.
Kelli Roberts↗
Quantitative, trait-based microbial ecology to accurately model the impacts of nitrogen deposition on soil carbon cycling in the Anthropocene (Final Technical Report)
Atmospheric nitrogen pollution has altered fundamental soil processes, challenging our understanding of the extent to which soils will continue to sequester carbon and slow the pace of future environmental change. While most evidence shows that increases in soil nitrogen have enhanced carbon storage in temperate forests, it remains unclear whether these effects will persist as nitrogen pollution continues to decline. Moreover, there remains uncertainty as to why some forests gain more carbon in response to nitrogen pollution than others. At the heart of this knowledge gap is a failure to link nitrogen–induced shifts in microbial biodiversity with gains or losses in their functional ability to decompose, assimilate, and ultimately stabilize soil carbon. Given that this uncertainty impedes the ability of predictive models to project future soil carbon stocks, there is a critical need to determine how key microbial traits drive soil carbon responses to nitrogen pollution. As such the goals of this project were to: (1) Quantify variation in taxon–specific and community–level microbial traits across gradients in microbial community composition, mycorrhizal symbioses, and nitrogen availability. (2) Integrate empirical data into a novel predictive framework that enhances our ability to project the regional soil carbon consequences of historical nitrogen pollution in temperate forests.
54 ENVIRONMENTAL SCIENCES↗
Patterns of Canopy and Surface Layer Consumption in a Boreal Forest Fire from Repeat Airborne Lidar
Fire in the boreal region is the dominant agent of forest disturbance with direct impacts on ecosystem structure, carbon cycling, and global climate. Global and biome-scale impacts are mediated by burn severity, measured as loss of forest canopy and consumption of the soil organic layer. To date, knowledge of the spatial variability in burn severity has been limited by sparse field sampling and moderate resolution satellite data. Here, we used pre- and post-fire airborne lidar data to directly estimate changes in canopy vertical structure and surface elevation for a 2005 boreal forest fire on Alaskas Kenai Peninsula. We found that both canopy and surface losses were strongly linked to pre-fire species composition and exhibited important fine-scale spatial variability at sub-30m resolution. The fractional reduction in canopy volume ranged from 0.61 in lowland black spruce stands to 0.27 in mixed white spruce and broad leaf forest. Residual structure largely reflects standing dead trees, highlighting the influence of pre-fire forest structure on delayed carbon losses from above ground biomass, post-fire albedo, and variability in understory light environments. Median loss of surface elevation was highest in lowland black spruce stands (0.18 m) but much lower in mixed stands (0.02 m), consistent with differences in pre-fire organic layer accumulation. Spatially continuous depth-of-burn estimates from repeat lidar measurements provide novel information to constrain carbon emissions from the surface organic layer and may inform related research on post-fire successional trajectories. Spectral measures of burn severity from Landsat were correlated with canopy (r = 0.76) and surface (r = -0.71) removal in black spruce stands but captured less of the spatial variability in fire effects for mixed stands (canopy r = 0.56, surface r = -0.26), underscoring the difficulty in capturing fire effects in heterogeneous boreal forest landscapes using proxy measures of burn severity from Landsat.
Alonzo, Michael↗
Data for: Time to anoxia: Observations and predictions of oxygen drawdown following coastal flood events
This dataset contains data and code associated with the paper Patel et al. "Time to anoxia: Observations and predictions of oxygen drawdown following coastal flood events".The coastal terrestrial-aquatic interface (TAI) is a highly dynamic system characterized by strong physical, chemical, and biological gradients. In particular, shifting soil redox conditions and consumption of terminal electron acceptors, due in part to dynamic hydrologic conditions, is a strong driver of carbon availability and transformations across TAIs. However, while redox dynamics are well described, our ability to quantitatively forecast rates of oxic to anoxic shifts in soils with different characteristics and inundation regimes is limited. We integrated field measurements, laboratory incubations, and model simulations to improve mechanistic understanding of oxygen consumption dynamics in coastal soils. Continuous in situ monitoring unexpectedly revealed that flooding caused temporary spikes in subsurface dissolved oxygen followed by rapid consumption in the wetlands. To further investigate these mechanisms in a controlled setting, we performed laboratory incubations using surface and subsurface soils from a TAI gradient (defined here as upland forest to transitional forest to wetland) in Western Lake Erie to measure oxygen consumption rates in TAI soils during flood events. In our experiments, wetland soils reached anoxia the fastest, in ∼ 9 h on average, whereas upland soils turned anoxic in ∼ 18 h. Subsurface upland soils did not turn anoxic even after two weeks of saturation in the lab, and their oxygen consumption patterns suggested carbon and/or nutrient limitation. These results are consistent with in-situ groundwater redox and oxygen measurements in the field, where wetland soils exhibited the highest rates of oxygen consumption along the TAI. Model simulations of oxygen consumption suggested that oxygen consumption had stronger abiotic controls in wetland soils but stronger biotic controls in upland soils, providing a useful framework for future incubation experiments. Microbial activity is a strong driver of oxygen consumption in TAI soils, although it is constrained by the availability of dissolved carbon in subsurface soils.This dataset contains a compressed (.zip) archive of the data and R scripts used for this manuscript. The dataset includes files in .csv format, which can be accessed and processed using MS Excel or R. This archive can also be accessed on GitHub at https://github.com/COMPASS-DOE/cmps-time_to_anoxia (DOI: 10.5281/zenodo.10815374).
54 ENVIRONMENTAL SCIENCES↗
Remote detection of soil geochemical anomalies from an aircraft platform - Examples from the Virginia Piedmont
The use of remote-sensing data on forest leaf flush to identify areas with anomalously high soil heavy-metal concentrations is demonstrated using airborne Thematic Mapper Simulator (TMS) leaf-area-index data obtained over two sites in Virginia in spring 1983 and 1984. Mean-reflectance differences, especially in the 760-900-nm and 630-690-nm bands, corresponding to delayed leaf flush are found to be good indicators of higher heavy-metal concentration. Airborne and ground-based canopy-temperature measurements are also shown to be significantly higher in high-heavy-metal areas than in control areas.
Bell, R.↗
Automated image processing of Landsat II digital data for watershed runoff prediction
Digital image processing of Landsat data from a 230 sq km area was examined as a possible means of generating soil cover information for use in the watershed runoff prediction of Kern County, California. The soil cover information included data on brush, grass, pasture lands and forests. A classification accuracy of 94% for the Landsat-based soil cover survey suggested that the technique could be applied to the watershed runoff estimate. However, problems involving the survey of complex mountainous environments may require further attention
Sasso, R. R.↗
Spatial transportability of geobotanical spectral signatures associated with soil geochemical anomalies
Consideration is given to a specific problem of spectral signature extension through examination and comparison of multitemporal spectral data signatures developed over a generalized, along-strike geochemical trend located within eastern deciduous hardwood forest. The spectral geobotanical signatures associated with soil Pb, Cu, and Zn anomalies were examined in south-central Virginia. Spectral discrimination between a training pair of anomalous and control sites within the Mineral district was 100 percent successful. It is concluded that spectral geobotanical signatures serve to identify regions of lowered biomass, lowered vigor, and/or differing species composition.
Bell, R.↗
Tradeoffs and Synergies in Tropical Forest Root Traits and Dynamics for Nutrient and Water Acquisition: Field and Modeling Advances
Vegetation processes are fundamentally limited by nutrient and water availability, the uptake of which is mediated by plant roots in terrestrial ecosystems. While tropical forests play a central role in global water, carbon, and nutrient cycling, we know very little about tradeoffs and synergies in root traits that respond to resource scarcity. Tropical trees face a unique set of resource limitations, with rock-derived nutrients and moisture seasonality governing many ecosystem functions, and nutrient versus water availability often separated spatially and temporally. Root traits that characterize biomass, depth distributions, production and phenology, morphology, physiology, chemistry, and symbiotic relationships can be predictive of plants’ capacities to access and acquire nutrients and water, with links to aboveground processes like transpiration, wood productivity, and leaf phenology. In this review, we identify an emerging trend in the literature that tropical fine root biomass and production in surface soils are greatest in infertile or sufficiently moist soils. We also identify interesting paradoxes in tropical forest root responses to changing resources that merit further exploration. For example, specific root length, which typically increases under resource scarcity to expand the volume of soil explored, instead can increase with greater base cation availability, both across natural tropical forest gradients and in fertilization experiments. Also, nutrient additions, rather than reducing mycorrhizal colonization of fine roots as might be expected, increased colonization rates under scenarios of water scarcity in some forests. Efforts to include fine root traits and functions in vegetation models have grown more sophisticated over time, yet there is a disconnect between the emphasis in models characterizing nutrient and water uptake rates and carbon costs versus the emphasis in field experiments on measuring root biomass, production, and morphology in response to changes in resource availability. Closer integration of field and modeling efforts could connect mechanistic investigation of fine-root dynamics to ecosystem-scale understanding of nutrient and water cycling, allowing us to better predict tropical forest-climate feedbacks.
54 ENVIRONMENTAL SCIENCES↗
Completing below-ground carbon budgets for pastures, recovering forests, and mature forests of Amazonia
This progress report covers the following efforts initiated for the year: year-round monthly soil CO2 flux measurements were started in both primary and secondary forests and in managed and degraded pastures; root sorting and weighing has begun and all four ecosystems at Paragominas have been analyzed through samples; regional modeling of soil water dynamics and minimum rooting depth has been done and the RADAMBRASIL soils database has been digitized and a 20 year record of the precipitation for the region has been produced, along with a hydrological ('bucket-tipping') model that will run within a GIS framework; prototype tension lysimeters have been designed and installed in soil pits to begin assessing the importance of DOC as a source of organic matter in deep soils; and many publications, listed in this document, have resulted from this year's research. Two of the papers published are included with this annual report document.
Davidson, Eric A.↗
Okefenokee Water Resources: Using Earth Observations to Assess Hydrologic Changes and Wildfire Risk in the Okefenokee Swamp
The Okefenokee Swamp is a vital ecosystem known for its protection of biodiversity, peatland carbon sinks, and recreational and economic opportunities for local residents. The swamp has experienced several wildfires since the 1990s, and new development along the borders of Okefenokee National Wildlife Refuge (ONWR) threatens to alter hydrologic activity and increase fire frequency. NASA DEVELOP partnered with staff at the ONWR to determine the feasibility of using satellite imagery to assess wildfire risk and map changes in vegetation cover. Using data from NASA satellites Landsat 7 Enhanced Thematic Mapper Plus (ETM+) and Landsat 8 Operational Land Imager (OLI), Soil Moisture Active Passive (SMAP) data from the USDA’s Crop Condition and Soil Moisture Analytics Tool (Crop-CASMA), European Space Agency (ESA) Sentinel-1 C-Band Synthetic Aperture Radar (C-SAR), and Sentinel-2 Multispectral Instrument (MSI), the DEVELOP team assessed the relationship between hydrologic change, vegetation cover, and wildfire risk in the swamp. Results showed that the southern portion of ONWR has been burned the most since 1990 and has greater water stability than other areas of the refuge. The team also found that the largest pockets of mature forests remain in the northernmost regions. Soil moisture anomaly readings may serve as an indicator of fire conditions. The team used these results to create a vegetation map, a swamp water visibility time series map, a historical wildfire correlation analysis, and a methodology tutorial. These products will assist the ONWR in making informed management decisions about the future of the Okefenokee Swamp.
Brianne Kendall↗
Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil
Members of the bacterial candidate phylum WPS-2 (or Eremiobacterota) are abundant in several dry, bare soil environments. In a bare soil deposited by an extinct iron-sulfur spring, we found that WPS-2 comprised up to 24% of the bacterial community and up to 108 cells per g of soil based on 16S rRNA gene sequencing and quantification. A single genus-level cluster (Ca. Rubrimentiphilum) predominated in bare soils but was less abundant in adjacent forest. Nearly complete genomes of Ca. Rubrimentiphilum were recovered as single amplified genomes (SAGs) and metagenome-assembled genomes (MAGs). Surprisingly, given the abundance of WPS-2 in bare soils, the genomes did not indicate any capacity for autotrophy, phototrophy, or trace gas metabolism. Instead, they suggest a predominantly aerobic organoheterotrophic lifestyle, perhaps based on scavenging amino acids, nucleotides, and complex oligopeptides, along with lithotrophic capacity on thiosulfate. Network analyses of the entire community showed that some species of Chloroflexi, Actinobacteria, and candidate phylum AD3 (or Dormibacterota) co-occurred with Ca. Rubrimentiphilum and may represent ecological or metabolic partners. We propose that Ca. Rubrimentiphilum act as efficient heterotrophic scavengers. Combined with previous studies, these data suggest that the phylum WPS-2 includes bacteria with diverse metabolic capabilities.
59 BASIC BIOLOGICAL SCIENCES↗
BOREAS TF-4 CO2 and CH4 Chamber Flux Data from the SSA
The BOREAS TF-4 team measured fluxes of CO2 and CH4 across the soil-air interface in four ages of jack pine forest at the BOREAS SSA during August 1993 to March 1995. Gross and net flux of CO2 and flux of CH4 between soil and air are presented for 24 chamber sites in mature jack pine forest, 20-year-old, 4-year-old, and clear cut areas. The data are stored in tabular ASCII files.
Anderson, Dean↗