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At least 451 records · Page 25
All sourcesNASA NTRSDOE OSTI
NASA NTRS2024

Central Park Ecological Conservation: Assessing Tree Health Conditions in New York City’s Central Park with NASA Earth Observation Data

The Central Park Conservancy stewards New York City’s iconic Central Park with a mission to preserve the park for all. This mission is complicated by the spread of Dutch elm disease (DED) which has threatened the culturally and ecologically significant American elm tree (Ulmus americana). Central Park is home to one of the largest and last remaining urban concentrations of American elm and the Conservancy currently protects them through integrated pest management. This paper discusses an interdisciplinary feasibility study that assessed the application of NASA Earth observations from 2014 to 2023 to detect changes in forest phenology possibly related to DED. Landsat 8 and 9 imagery was used to calculate multiyear time series of the Normalized Difference Vegetation Index (NDVI) and quantify changes in land surface phenology for a given year. A pixel-based logistic regression analysis was performed using changes in NDVI, tree site locations, and recorded occurrences of trees infected with DED as inputs. The results of this analysis show that changes in NDVI derived from Landsat data are capable of detecting unhealthy tree canopies with 71% precision and healthy tree canopies with 41% precision. The study had uncertainties and limitations due to the spatial and temporal resolutions of Landsat, the natural variability in land surface phenology and NDVI, and the attempt to detect disease impacts while disease prevention and mitigation is occurring. As is, the findings of this study and its methods provide managers with an approach for integrating Earth observations to make more informed decisions in the application and timing of urban forest management activities.

Central Park↗
DOE OSTI2021

Distribution, Ecology, Life History, and Conservation Status of the Berry Cave Salamander (Gyrinophilus gulolineatus)

The Berry Cave Salamander (Gyrinophilus gulolineatus) is a neotenic, stygobitic salamander endemic to eight cave systems and an isolated surface record in the Appalachian Valley and Ridge of eastern Tennessee. We conducted surveys for G. gulolineatus from 2017–2019 to assess the status of the species, locate new populations, and address knowledge gaps related to life history and population ecology required for conservation assessment. We confirmed G. gulolineatus presence at four historical sites, but we did not observe the species at any additional caves. At the three known sites with greatest abundance, visual counts per survey ranged 0–19 salamanders in 2017–2019. There was no apparent trend in abundance at Berry Cave. Visual counts declined 65% since the mid-2000s at Meads Quarry Cave and 80% since the early 1980s at Mudflats Cave. Mark-recapture studies in 160-m of cave stream at Berry Cave in 2017–2018 and 900-m of cave stream at Meads Quarry Cave in 2008 yielded population size estimates that ranged from 34–78 and 15–65 individuals, respectively. We identified 13 existing or potential threats to populations. Habitat degradation and groundwater contamination (associated with urbanization of the Knoxville metropolitan area and past mining operations) represent the most evident threats to long-term viability. Based on our conservation assessments, we recommend a rank of Endangered under IUCN Red List criteria and Critically Imperiled–Imperiled (G1G2) under NatureServe criteria. In opposition to the recent U.S. Fish & Wildlife Service decision, we advocate that, at minimum, G. gulolineatus remain a Candidate Species. Given the identified threats and these ranks, we offer several recommendations for research, conservation, and management of this rare salamander.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Bats and Wind Turbines: Adding Ecological Context to the Olfaction Hypothesis

Several hypotheses attempt to explain why bats collide with wind turbines. One recent hypothesis is that collisions result from bats scent marking turbines and that scent-marked turbines produce odor plumes that attract bats. This olfaction hypothesis is intriguing, but currently lacks the ecological context required to assess its plausibility. To provide context, we review when we expect Northern Hoary Bats and Mexican Free-tailed Bats to scent mark under natural conditions, and determine if our findings align with observations of bats interacting with wind turbines. We then consider the plausibility of scent-marked turbines creating odor plumes that attract bats. We conclude that it is unlikely that bats scent mark turbines intentionally in mid-flight or are attracted to scent markings on turbines.

17 WIND ENERGY↗
DOE OSTI2026

The Zooplankton International Geospatial dataset: A global repository of spatiotemporal freshwater zooplankton community composition data from lakes and reservoirs to support ecological research

Zooplankton transfer substantial energy in aquatic food webs and are used as indicators of environmental change. Syntheses of zooplankton community dynamics globally require datasets that span a wide range of environmental gradients; however, these datasets are limited due to methodological differences across programs, taxonomic inconsistencies, and a lack of standardized metadata. To reconcile these challenges, we created the Zooplankton International Geospatial (ZIG) dataset, which includes original zooplankton, water physical and chemical variables, and lake morphometric data from 311 inland lakes and reservoirs. ZIG includes waterbodies ranging in size from 0.005 to 82,100 km2 and spanning broad latitudinal (−47.26 to 64.90) and longitudinal ranges (−165.04 to 176.53). Temporal coverage for individual waterbodies ranges between 1 and 60 yr with sampling frequency ranging from annually to weekly. With its extensive coverage and content, we consider ZIG to be a cornerstone for future investigations of global scale lake biodiversity change.

Figary, Stephanie [Cornell University, Ithaca, NY]↗
DOE OSTI2020

Carbon budget of the Harvard Forest Long-Term Ecological Research site: pattern, process, and response to global change

How, where, and why carbon (C) moves into and out of an ecosystem through time are long-standing questions in biogeochemistry. Here, we bring together hundreds of thousands of C-cycle observations at the Harvard Forest in central Massachusetts, USA, a mid-latitude landscape dominated by 80–120-yr-old closed-canopy forests. These data answered four questions: (1) where and how much C is presently stored in dominant forest types; (2) what are current rates of C accrual and loss; (3) what biotic and abiotic factors contribute to variability in these rates; and (4) how has climate change affected the forest’s C cycle? Harvard Forest is an active C sink resulting from forest regrowth following land abandonment. Soil and tree biomass comprise nearly equal portions of existing C stocks. Net primary production (NPP) averaged 680–750 g C·m –2 ·yr –1 ; belowground NPP contributed 38–47% of the total, but with large uncertainty. Mineral soil C measured in the same inventory plots in 1992 and 2013 was too heterogeneous to detect change in soil-C pools; however, radiocarbon data suggest a small but persistent sink of 10–30 g C·m –2 ·yr –1 . Net ecosystem production (NEP) in hardwood stands averaged ~300 g C·m –2 ·yr –1 . NEP in hemlock-dominated forests averaged ~450 g C·m –2 ·yr –1 until infestation by the hemlock woolly adelgid turned these stands into a net C source. Since 2000, NPP has increased by 26%. For the period 1992–2015, NEP increased 93%. The increase in mean annual temperature and growing season length alone accounted for ~30% of the increase in productivity. Interannual variations in GPP and NEP were also correlated with increases in red oak biomass, forest leaf area, and canopy-scale light-use efficiency. Compared to long-term global change experiments at the Harvard Forest, the C sink in regrowing biomass equaled or exceeded C cycle modifications imposed by soil warming, N saturation, and hemlock removal. Furthermore, the results of this synthesis and comparison to simulation models suggest that forests across the region are likely to accrue C for decades to come but may be disrupted if the frequency or severity of biotic and abiotic disturbances increases.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

The importance of trait selection in ecology

Two recent publications have explored the importance of roots for understanding plant form and function but reached opposite conclusions on the basis of largely overlapping data. Carmona et al. concluded that their results “do not confirm the strong covariation between leaf and fine-root traits predicted by the plant economics spectrum hypothesis”. By contrast, Weigelt et al. concluded that “key leaf and fine-root traits were aligned along the expected [fast–slow] ‘conservation’ gradient of plant economic investment”. Furthermore, here we reflect on the causes for the apparent discrepancies of these studies and show that the rationale behind trait selection is vital for the conclusions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses

Nitrogen (N) fertilizer has often been generously applied to increase crop biomass yield. Although the influences of inorganic N fertilizer on soil microbial communities have been widely studied, the effect of N fertilizer on microbial co-occurrence networks and its metagenome is largely unknown. Further, seasonal changes in microbial community responses to N addition have rarely been reported. In this study, three N fertilizer rates (0, 56, 196 kg N/ha) were applied annually in switchgrass (Panicum virgatum L.) grown for bioenergy production in the upper Midwest, USA. The soil microbiome was affected by both fertilizer and low pH in the 7th year of fertilization treatments. The microbial community structures were relatively stable during the growing season for each N fertilizer rate. However, the excess N fertilizer (196N) increased the seasonal variation of bacterial and fungal communities. Network analysis showed that the microbial interactions at the 196N treatment were more intense, with decreased bacteria-fungal interactions compared to 56N and 0N. Furthermore, this suggests that the microbial community became more sensitive to environmental change under the influence of long-term excess N fertilizer. Metagenomic analysis showed that the long-term excess N fertilizer promoted many metabolic processes, especially carbohydrate and amino acid related metabolism and Archaea mediated ammonia oxidation. However, N fertilizer also reduced many other traits, especially N 2 fixation and signal transduction, the latter of which may contribute to the decreased interactions between bacteria and fungi.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential

Increasing wildfire severity, which is common throughout the western United States, can have deleterious effects on plant regeneration and large impacts on carbon (C) and nitrogen (N) cycling rates. Soil microbes are pivotal in facilitating these elemental cycles, so understanding the impact of increasing fire severity on soil microbial communities is critical. Here, we assess the long-term impact of high-severity fires on the soil microbiome. We find that high-severity wildfires result in a multi-decadal (>25 y) recovery of the soil microbiome mediated by concomitant differences in aboveground vegetation, soil chemistry, and microbial assembly processes. Our results depict a distinct taxonomic and functional successional pattern of increasing selection in post-fire soil microbial communities. Changes in microbiome composition corresponded with changes in microbial functional potential, specifically altered C metabolism and enhanced N cycling potential, which related to rates of potential decomposition and inorganic N availability, respectively. Based on metagenome-assembled genomes, we show that bacterial genomes enriched in our earliest site (4 y since fire) harbor distinct traits such as a robust stress response and a high potential to degrade pyrogenic, polyaromatic C that allow them to thrive in post-fire environments. Taken together, these results provide a biological basis for previously reported process rate measurements and explain the temporal dynamics of post-fire biogeochemistry, which ultimately constrains ecosystem recovery.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Adaptive responses of marine diatoms to zinc scarcity and ecological implications

Scarce dissolved surface ocean concentrations of the essential algal micronutrient zinc suggest that Zn may influence the growth of phytoplankton such as diatoms, which are major contributors to marine primary productivity. However, the specific mechanisms by which diatoms acclimate to Zn deficiency are poorly understood. Using global proteomic analysis, we identified two proteins (ZCRP-A/B, Zn/Co Responsive Protein A/B) among four diatom species that became abundant under Zn/Co limitation. Characterization using reverse genetic techniques and homology data suggests putative Zn/Co chaperone and membrane-bound transport complex component roles for ZCRP-A (a COG0523 domain protein) and ZCRP-B, respectively. Metaproteomic detection of ZCRPs along a Pacific Ocean transect revealed increased abundances at the surface (<200 m) where dZn and dCo were scarcest, implying Zn nutritional stress in marine algae is more prevalent than previously recognized. These results demonstrate multiple adaptive responses to Zn scarcity in marine diatoms that are deployed in low Zn regions of the Pacific Ocean.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China

Recent advances in environmental genomics have provided unprecedented opportunities for the investigation of viruses in natural settings. Yet, our knowledge of viral biogeographic patterns and the corresponding drivers is still limited. Here, we perform metagenomic deep sequencing on 90 acid mine drainage (AMD) sediments sampled across Southern China and examine the biogeography of viruses in this extreme environment. The results demonstrate that prokaryotic communities dictate viral taxonomic and functional diversity, abundance and structure, whereas other factors especially latitude and mean annual temperature also impact viral populations and functions. In silico predictions highlight lineage-specific virus-host abundance ratios and richness-dependent virus-host interaction structure. Further functional analyses reveal important roles of environmental conditions and horizontal gene transfers in shaping viral auxiliary metabolic genes potentially involved in phosphorus assimilation. Our findings underscore the importance of both abiotic and biotic factors in predicting the taxonomic and functional biogeographic dynamics of viruses in the AMD sediments.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Viromics approaches for the study of viral diversity and ecology in microbiomes

Viruses are found across all ecosystems and infect every type of organism on Earth. Traditional culture-based methods have proven insufficient to explore this viral diversity at scale, driving the development of viromics, the sequence-based analysis of uncultivated viruses. Viromics approaches have been particularly useful for studying viruses of microorganisms, which can act as crucial regulators of microbiomes across ecosystems. They have already revealed the broad geographic distribution of viral communities and are progressively uncovering the expansive genetic and functional diversity of the global virome. Moving forward, large-scale viral ecogenomics studies combined with new experimental and computational approaches to identify virus activity and host interactions will enable a more complete characterization of global viral diversity and its effects.

Ecology↗