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At least 451 records · Page 25
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility

ABSTRACT We report the genome sequences of four Endozoicomonas sp. strains isolated from the octocoral Litophyton maintained long term at an aquarium facility. Our analysis reveals the coding potential for versatile polysaccharide metabolism; Type II, III, IV, and VI secretion systems; and the biosynthesis of novel ribosomally synthesized and post-translationally modified peptides.

Marques, Matilde (ORCID:0000000194430893)↗
DOE OSTI2025

The ATTO-Campina site: A new observatory for tropical convection and gas-aerosol-cloud-precipitation interactions in the Amazon

We present results from ATTO-Campina, a new permanent observational site in central Amazon, about 4 km from the ATTO towers. Operational since 2020, ATTO-Campina characterizes atmospheric, cloud and rainfall properties through remote sensing. The goal is to provide continuous, complementary measurements to the ATTO towers, addressing the rainforest’s complex gas-aerosol-cloud-precipitation dynamics. Using a 3.5-year dataset, we classified convective clouds into three types: shallow cumulus (ShCu), congestus (Con) or (Deep) clouds. The shallow-to-deep transition takes about three hours, starting with ShCu formation at 11:00 local time. The accumulated rainfall peak follows at about 16:00. Only weak downdrafts are present in the upper troposphere where previous studies indicate new particle formation (NPF) occurrence. Strong downdrafts are mostly limited to heights below 5 km. Con and Deep convective days have higher concentrations of ultrafine aerosol and lower concentrations of accumulation-mode particles compared to ShCu. Convective clouds also significantly modify gas mixing ratios. Deep convective clouds are associated with high near-surface O3, consistent with downward transport from the midtroposphere. Our results showcase the added detail achieved by integrating data from the ATTO towers and ATTO-Campina sites. Together, these sites support better understanding of interconnected gas-aerosol-cloud-precipitation processes in the Amazon and their evolution under climate change.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Convective Transition Statistics over Tropical Oceans for Climate Model Diagnostics: GCM Evaluation

To assess deep convective parameterizations in a variety of GCMs and examine the fast-time-scale convective transition, a set of statistics characterizing the pickup of precipitation as a function of column water vapor (CWV), PDFs and joint PDFs of CWV and precipitation, and the dependence of the moisture–precipitation relation on tropospheric temperature is evaluated using the hourly output of two versions of the GFDL Atmospheric Model, version 4 (AM4), NCAR CAM5 and superparameterized CAM (SPCAM). The 6-hourly output from the MJO Task Force (MJOTF)/GEWEX Atmospheric System Study (GASS) project is also analyzed. Contrasting statistics produced from individual models that primarily differ in representations of moist convection suggest that convective transition statistics can substantially distinguish differences in convective representation and its interaction with the large-scale flow, while models that differ only in spatial–temporal resolution, microphysics, or ocean–atmosphere coupling result in similar statistics. Most of the models simulate some version of the observed sharp increase in precipitation as CWV exceeds a critical value, as well as that convective onset occurs at higher CWV but at lower column RH as temperature increases. While some models quantitatively capture these observed features and associated probability distributions, considerable intermodel spread and departures from observations in various aspects of the precipitation–CWV relationship are noted. For instance, in many of the models, the transition from the low-CWV, nonprecipitating regime to the moist regime for CWV around and above critical is less abrupt than in observations. Additionally, some models overproduce drizzle at low CWV, and some require CWV higher than observed for strong precipitation. For many of the models, it is particularly challenging to simulate the probability distributions of CWV at high temperature.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Evaluating Tropical Precipitation Relations in CMIP6 Models with ARM Data

Abstract A set of diagnostics based on simple, statistical relationships between precipitation and the thermodynamic environment in observations is implemented to assess phase 6 of the Coupled Model Intercomparison Project (CMIP6) model behavior with respect to precipitation. Observational data from the Atmospheric Radiation Measurement (ARM) permanent field observational sites are augmented with satellite observations of precipitation and temperature as an observational baseline. A robust relationship across observational datasets between column water vapor (CWV) and precipitation, in which conditionally averaged precipitation exhibits a sharp pickup at some critical CWV value, provides a useful convective onset diagnostic for climate model comparison. While a few models reproduce an appropriate precipitation pickup, most models begin their pickup at too low CWV and the increase in precipitation with increasing CWV is too weak. Convective transition statistics compiled in column relative humidity (CRH) partially compensate for model temperature biases—although imperfectly since the temperature dependence is more complex than that of column saturation. Significant errors remain in individual models and weak pickups are generally not improved. The conditional-average precipitation as a function of CRH can be decomposed into the product of the probability of raining and mean precipitation during raining times (conditional intensity). The pickup behavior is primarily dependent on the probability of raining near the transition and on the conditional intensity at higher CRH. Most models roughly capture the CRH dependence of these two factors. However, compensating biases often occur: model conditional intensity that is too low at a given CRH is compensated in part by excessive probability of precipitation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Conservation of Dry Air, Water, and Energy in CAM and Its Potential Impact on Tropical Rainfall

Abstract For the Community Atmosphere Model version 6 (CAM6), an adjustment is needed to conserve dry air mass. This adjustment exposes an inconsistency in how CAM6’s energy budget incorporates water—in CAM6 water in the vapor phase has energy, but condensed phases of water do not. When water vapor condenses, only its latent energy is retained in the model, while its remaining internal, potential, and kinetic energy are lost. A global fixer is used in the default CAM6 model to maintain global energy conservation, but locally the energy tendency associated with water changing phase violates the divergence theorem. This error in energy tendency is intrinsically tied to the water vapor tendency, and reaches its highest values in regions of heavy rainfall, where the error can be as high as 40 W m −2 annually averaged. Several possible changes are outlined within this manuscript that would allow CAM6 to satisfy the divergence theorem locally. These fall into one of two categories: 1) modifying the surface flux to balance the local atmospheric energy tendency and 2) modifying the local atmospheric tendency to balance the surface plus top-of-atmosphere energy fluxes. To gauge which aspects of the simulated climate are most sensitive to this error, the simplest possible change—where condensed water still does not carry energy and a local energy fixer is used in place of the global one—is implemented within CAM6. Comparing this experiment with the default configuration of CAM6 reveals precipitation, particularly its variability, to be highly sensitive to the energy budget formulation. Significance Statement This study examines and explains spurious regional sources and sinks of energy in a widely used climate model. These energy errors result from not tracking energy associated with water after it transitions from the vapor phase to either liquid or ice. Instead, the model used a global fixer to offset the energy tendency related to the energy sources and sinks associated with condensed water species. We replace this global fixer with a local one to examine the model sensitivity to the regional energy error and find a large sensitivity in the simulated hydrologic cycle. This work suggests that the underlying thermodynamic assumptions in the model should be revisited to build confidence in the model-simulated regional-scale water and energy cycles.

Harrop, Bryce E.↗
DOE OSTI2021

Convective-Environmental Interactions in the Tropics

During the four years of this grant performance, the PI and her research group have made a number of significant contributions toward better understanding convective processes over the Amazon. First, she made available to the broader community a two-year data set of convective storm metrics based on SIPAM radar data from the central Amazon that has been utilized widely. Second, her students analyzed cold pool and heating characteristics of Amazonian convection and showed in heretofore unknown ways how both can impact new convective initiation (e.g., through multiple cold pool interactions and gravity waves formed via pulsed heating). Finally, her group more broadly showed how Amazonian and Indian Ocean convection interacts with the large-scale environment, especially low-level winds (e.g., the nocturnal Amazonian low-level jet) and deeper tropospheric moisture, to help it organize and how this interaction is represented in climate models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Multiscale Land-Atmosphere Interaction in Tropical Ecosystems

A leading source of uncertainty in the magnitude of future climate change arises from feedback between the physical climate system and the carbon cycle. Output from 15 Earth System Models (ESMs) in the Coupled Model Intercomparison Project (CMIP5) shows that when forced by identical emissions, predicted atmospheric CO 2 concentrations in 2100 ranged from 780 ppm to 1120 ppm due to variations in carbon cycle feedback among the models. The resulting difference in radiative forcing of climate is almost 2 W m -2 , comparable to the total uncertainty in the physical climate system for the representative concentration pathway (RCP) 8.5 scenario in 2100. Scaling future carbon sources and sinks to match contemporary atmospheric CO 2 reduced this uncertainty by a factor of five, suggesting that contemporary observations might dramatically constrain future predictions, but their scaling had no mechanistic basis, so it provides little insight on carbon cycle processes.

54 ENVIRONMENTAL SCIENCES↗