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DOE OSTI2024

Adaptive gene loss in the common bean pan-genome during range expansion and domestication

The common bean ( Phaseolus vulgaris L.) is a crucial legume crop and an ideal evolutionary model to study adaptive diversity in wild and domesticated populations. Here, we present a common bean pan-genome based on five high-quality genomes and whole-genome reads representing 339 genotypes. It reveals ~234 Mb of additional sequences containing 6,905 protein-coding genes missing from the reference, constituting 49% of all presence/absence variants (PAVs). More non-synonymous mutations are found in PAVs than core genes, probably reflecting the lower effective population size of PAVs and fitness advantages due to the purging effect of gene loss. Our results suggest pan-genome shrinkage occurred during wild range expansion. Selection signatures provide evidence that partial or complete gene loss was a key adaptive genetic change in common bean populations with major implications for plant adaptation. The pan-genome is a valuable resource for food legume research and breeding for climate change mitigation and sustainable agriculture.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Influence of intrinsic and extrinsic attributes on neonate survival in an invasive large mammal

Abstract Understanding factors influencing survival of neonates for wild species is important for successful management, particularly for determining drivers of population dynamics. Wild pigs ( Sus scrofa ) are invasive and populations are rapidly increasing in part due to high reproductive capacity. Survival of adults is generally high, however, survival of piglets, and particularly neonates, is largely unknown. We located neonates at the natal nest and quantified survival in relation to individual and maternal biological attributes, and environmental variables. During 2017–2020, we captured 50 neonates from 13 litters and documented 28 mortalities (56%) over six weeks. Survival was positively influenced by pelage coloration, likely as a form of camouflage from predators. Male neonates had higher survival. They were born larger than females, which could be beneficial for thermoregulation and competition for milk. Neonates born to larger sows had lower survival. Sow size was positively correlated with litter size, and this finding may reflect the increased nutritional demands of sustaining large litters, or difficulties in defending more neonates against predators. Neonates born in warmer months had higher survival than those born in cooler months. Neonates are inefficient thermoregulators, thus being born in warmer months could be beneficial for maintaining homeostasis as well as access to more food resources. These are the largest and most complete data for neonate wild pig survival and will inform population models for the development of management strategies to reduce negative impacts of this destructive invasive species on native ecosystems.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Mesoscale Modeling to Characterize Eagle Soaring Habitat

Uncovering drivers of risk is crucial to understanding interactions between wildlife and wind turbines, and identifying options for impact minimization. These drivers tie to co-variates linked to behavior and movement patterns that allow us to estimate locations and periods of risk. For volant species, atmospheric flow can have significant influence on flight patterns. For obligate soaring birds, like golden eagles, updraft velocities can inform where eagles are likely to travel, at what altitude, and where conditions are not likely sufficient to sustain soaring flight. This has been an active area of study in recent years, using relatively coarse atmospheric data generally at the 20km x 20km scale or larger. Leveraging a 20-year dataset from the Weather Research and Forecasting Model (WRF) (https://www.mmm.ucar.edu/weather-research-and-forecasting-model), we are quantifying vertical velocities across the continental United States at a 2km x 2km resolution. Wind resource data sets originally were static maps showing the mean annual wind speed over an area. However, for these data sets to be optimally used for various applications they must be high-resolution time series, seamlessly span large geographic contexts, and account for uncertainty in wind speed. The National Renewable Energy Laboratory is producing public available datasets that meet these criteria and will be bias corrected to yield the most accurate wind resource data. This effort is an augment to the current WIND Toolkit which houses a high resolution data set. In the new iteration of the WIND Toolkit, a 20-year dataset will be used to improve the accuracy and estimate uncertainty using ensemble and machine-learning techniques. The resulting product will be the most accurate dataset of its size and at a 2km x 2km spatial and 5-minute temporal resolution. Through this work, a mesoscale vertical velocity layer will be produced by calculating the likelihood of orographic updraft and thermal updraft conditions across the continental United States. Specifically, we will use WRF model output combined with digital elevation maps to predict updrafts and then determine if vertical velocities are sufficient to support Golden Eagle soaring and gliding. Ultimately this data layer will be made available as a GIS layer in the Wind Prospector (maps.nrel.gov/wind-prospector/) tool or a similar framework. Data that will be incorporated include wind speed, direction temperature, relative humidity, barometric pressure, air density, precipitation rate, solar radiation, atmospheric stability, skin temperature, and upward heat flux. These products will advance research on interactions between volant species and wind energy by providing open access to highly resolved data with uncertainty quantification not previously available at this scale.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Frequency Control and Disturbance Containment Using Grid-Forming Embedded Storage Networks

The paper presents a distributed approach for operating a network of inverter-based energy storage resources embedded in a bulk power system. Departing from their traditional role of steady-state reserves, the storage assets in the network are utilized as frequency-responsive resources shaping system dynamics. The power electronics converter systems interfacing the storage resources are equipped with local controllers designed to respond under transient disturbances. To this end, a safety-constrained distributed control strategy is explored. The paper compares the performance of converter-interfaced grid-forming and grid-following storage networks for fast frequency control and disturbance containment/localization. Sensitivity studies are performed to study the impact of storage size, steady-state dispatch, and controller design on dynamic performance. The findings are presented through case studies with results from the IEEE test systems.

Chatterjee, Kaustav (ORCID:0000000153273860)↗

DOE OSTI2023

Projections of winter polynyas and their biophysical impacts in the Ross Sea Antarctica

Abstract This study investigates winter polynyas in the southern Ross Sea, Antarctica where several polynyas are known to form. Coastal polynyas are areas of lower sea ice concentration and/or thickness along the coast that are otherwise surrounded by more extensive, thicker sea ice pack. Polynyas are also locations where organisms can exploit both the ice substrate and pelagic resources. Using a self organizing map algorithm, we identify polynya events in the Community Earth System Model Version 2 Large Ensemble (CESM2-LE). The neural network algorithm is able to identify polynya events without imposing an ice concentration or thickness threshold, as is often done when identifying polynyas. The CESM2-LE produces a wintertime polynya feature comparable in size and location to the Ross Sea polynya, and during polynya events there are large turbulent heat fluxes and export of sea ice from the Ross Sea. In the CESM2-LE polynya event frequency is projected to decrease sharply in the later twentyfirst century, leading to increasing sea ice concentrations and thicknesses in the region. The drivers of the polynya frequency decline are likely both large scale circulation changes and local atmosphere and ocean feedbacks. If declines in wintertime polynya frequency over the twentyfirst century do occur they may impact Antarctic Bottom Water formation and local net primary productivity. Thus, better understanding potential local and unexpected sea ice changes in the Ross Sea is important for both assessing climate system impacts and ecological impacts on the Ross Sea ecosystem, which is currently protected by an internationally recognized marine protected area.

Meteorology & Atmospheric Sciences↗

DOE OSTI2023

Evaluation of the economic implications of varied pressure drawdown strategies generated using a real-time, rapid predictive, multi-fidelity model for unconventional oil and gas wells

Experience has suggested that pressure maintenance in hydraulically fractured reservoirs via lower, more sustained production drawdowns may offer improved cumulative recovery and overall resource extraction efficiency compared to more rapid drawdown approaches aimed at generating high initial production. However, given the inherent variability of oil and natural gas markets, operators pursue production strategies that maximize profitability over resource extraction efficiency. This study focuses on evaluating the implications of contrasting pressure drawdown strategies on the long-term production and resulting economics for a real, producing unconventional gas well in the Marcellus Shale of the Appalachian Basin using a techno-economic analysis approach. Our research combines elements of well-specific horizontal well design, production forecasting, equipment sizing and capital cost estimation, operating cost estimation, and revenue and tax calculations. Gas production forecast outlook scenarios were generated under varying pressure drawdowns using two approaches: 1) a novel physics-informed machine learning workflow and 2) traditional reservoir simulation. A discounted cash flow model was used to evaluate the resulting economic implications for each drawdown scenario—generating output for exploring the coupled effect of factors like the timing and volume of gas production, prevailing economic and market conditions for natural gas, and overall estimated ultimate recovery on profitability metrics such as internal rate of return and net present value. Results show that there is potential to maximize the cumulative gas produced in the specific case study well by employing a lower pressure drawdown. Conversely, the greatest profitability is achieved using rapid drawdown as signified by a small, specific subset of our outlook scenarios. On an averaging basis, we find that the combinations of highest cumulative producing and most profitable scenarios occur under lower drawdowns with long (>40 years) producing timeframes, but require higher relative gas price and lower discounting considerations. Further, the machine learning predictive outlooking capability proved effective for enabling rapid generation of a multitude of scenario forecasts. As a result, a variety of prominent example cases could be generated to strike the balance of greater productivity and economic return given their associated producing features and economic conditions when compared to similar producing scenarios—critical insight that offers improved decision support for unconventional oil and gas operations.

42 ENGINEERING↗

DOE OSTI2021

Hyperbolic Reformulation Approach to Enable Efficient Simulation of Groundwater Flow and Reactive Transport

We apply Cattaneo's relaxation approach to the one-dimensional coupled Boussinesq groundwater flow and advection-diffusion-reaction equations, commonly used in engineering applications to simulate contaminant transport in the subsurface. The diffusion-type governing equations are reformulated as a hyperbolic system, augmented by an equation that can be interpreted as a momentum balance. The hyperbolization enables an efficient unified computation of the primary variable and its gradients, for example piezometric head and unit discharge in the Boussinesq equation. An augmented Roe scheme is used to solve the hyperbolic system. The hyperbolized system of equations is studied in a set of steady state and transient test cases with idealized geometry. These test cases confirm the equivalence of the hyperbolic system to its original formulation. The larger time step size of the hyperbolic equation is verified theoretically by means of a stability analysis and numerically in the test cases. Finally, a reach-scale application of flow and transport across a river meander is considered. This application case shows that the performance of the hyperbolic relaxation approach holds for more realistic groundwater flow and transport problems, relevant to water resources management.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Deciphering Discrepancies: A Comparative Analysis of Docker Image Security

As the use of microservices continues to grow and become a foundational approach to architecting software solutions, ensuring the security of microservices is paramount. Docker images have emerged as the predominant solution to containerize microservices–and thus, Docker images are becoming a large attack surface. Thus, reducing vulnerabilities in Docker images will reduce microservice cyberattacks. A common way to find vulnerabilities in Docker images employs static analysis tools like Trivy and Grype. However, these tools frequently generate disparate vulnerability reports when analyzing the same Docker image, thus causing uncertainty in tool selection. We collected 927 Docker images, analyzed them with Trivy and Grype, and compared the vulnerabilities reported in each image. Among the 865 images found to have vulnerabilities, Trivy and Grype disagreed on both the number of vulnerabilities and the vulnerability IDs found therein. Since both tools interface with external vulnerability databases, some discrepancies can be attributed to how the tools interface with these external resources. The external vulnerability databases partially overlap and frequently contradict one another, thereby creating challenges for static analysis tool developers and end users alike. This New Ideas and Emerging Results (NIER) study contains new and critical information that practitioners need for selecting and using static analysis tools–given that increases in the use of Docker technologies means increases in the size of the attack surfaces.

Boles, Brittany [Montana State University]↗

DOE OSTI2020

Quantum Super-resolution Bioimaging using Massively Entangled Multimode Squeezed Light

This report presents a new method for realizing a super-resolution quantum imaging using massively entangled multimode squeezed light (MEMSL). Each branch of the entangled multimode light interacts with the sample and bears the spatially varying optical phase delay. When imaging optics with finite pupil sizes are used, information is lost. Thanks to the analyticity in the Fourier plane, a noiseless measurement would recover the lost information and accomplish super resolution imaging beating the Rayleigh diffraction limit. I proved rigorously in a fully quantum formalism and presented that (1) such information recovery is possible and (2) the information recovery can be accomplished with much less resources when MEMSL is used than those needed in any non-entangled or non-squeezed classical imaging method. Furthermore, the action of the optical loss in the imaging system that degrades the imaging performance is also rigorously analyzed and presented. Several bioimaging applications that can benefit tremendously from the proposed quantum imaging scheme are also suggested.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2022

A Retrospective Analysis of Distributed Solar Interconnection Timelines and Related State Mandates

Most distributed residential photovoltaic (PV) systems must secure an interconnection agreement prior to operation that ensures the local electrical system will operate safely within the broader electrical grid. PV installers generally submit an interconnection application to the local utility that provides all the necessary details the utility needs to evaluate the proposed system. To encourage timely execution of this process, many states’ utility commissions have established mandates that limit the maximum number of days allowed for utility review and approval of interconnection for certain small, often residential applications. In this paper, we derive the median and range of cycle times for the pre-installation approval phase of the interconnection process (i.e., from application submission to approval by the utility) across 24 U.S. states, using a data set of approximately 170,000 projects. We evaluate the percentage of projects that are approved within respective state-mandated timelines from 2017– 2019. We further evaluate how timelines have evolved since 2012 for a subset of five states: Arizona, California, Colorado, New Jersey, and New York. The analyses are divided into two size ranges: systems that are ≤10 kilowatts (kW), and systems that are 11–50 kW.

14 SOLAR ENERGY↗

DOE OSTI2022

Unleashing the Frequency: Multi-Megawatt Demonstration of 100% Renewable Power Systems with Decentralized Communication-Less Control Scheme

Power systems, which range in size from small microgrids to island systems to large regional grids, are typically managed by a central controller that requires complex communication methods and can be unreliable and pose cyber security risks in certain applications, especially when controlling a larger number of nodes. We propose an inherently robust, scalable method of integration using multiple energy storage systems and distributed energy resources, which does not require any means of dedicated communication. This method moves beyond the paradigm of controlling grid frequency at a fixed value (e.g., 60 Hz), instead allowing the frequency to fluctuate within certain limits (e.g., 59.6-60.4 Hz). With a greater operating range, the frequency can carry necessary information from energy storage systems to highly variable distributed energy resources like photovoltaics, wind, hydro, etc.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2023

Comparing quantile regression forest and mixture density long short-term memory models for probabilistic post-processing of satellite precipitation-driven streamflow simulations

Abstract. Deep learning (DL) and machine learning (ML) are widely used in hydrological modelling, which plays a critical role in improving the accuracy of hydrological predictions. However, the trade-off between model performance and computational cost has always been a challenge for hydrologists when selecting a suitable model, particularly for probabilistic post-processing with large ensemble members. This study aims to systematically compare the quantile regression forest (QRF) model and countable mixtures of asymmetric Laplacians long short-term memory (CMAL-LSTM) model as hydrological probabilistic post-processors. Specifically, we evaluate their ability in dealing with biased streamflow simulations driven by three satellite precipitation products across 522 nested sub-basins of the Yalong River basin in China. Model performance is comprehensively assessed using a series of scoring metrics from both probabilistic and deterministic perspectives. Our results show that the QRF model and the CMAL-LSTM model are comparable in terms of probabilistic prediction, and their performances are closely related to the flow accumulation area (FAA) of the sub-basin. The QRF model outperforms the CMAL-LSTM model in most sub-basins with smaller FAA, while the CMAL-LSTM model has an undebatable advantage in sub-basins with FAA larger than 60 000 km2 in the Yalong River basin. In terms of deterministic predictions, the CMAL-LSTM model is preferred, especially when the raw streamflow is poorly simulated and used as input. However, setting aside the differences in model performance, the QRF model with 100-member quantiles demonstrates a noteworthy advantage by exhibiting a 50 % reduction in computation time compared to the CMAL-LSTM model with the same ensemble members in all experiments. As a result, this study provides insights into model selection in hydrological post-processing and the trade-offs between model performance and computational efficiency. The findings highlight the importance of considering the specific application scenario, such as the catchment size and the required accuracy level, when selecting a suitable model for hydrological post-processing.

Geology↗

DOE OSTI2021

Computational Risk Analysis of Propane Releases in Maintenance Facilities

Liquefied petroleum gas (LPG) is a viable, cleaner alternative to traditional diesel fuel used in busses and other heavy-duty vehicles and could play a role in helping the US meet its lower emission goals. While the LPG industry has focused efforts on developing vehicles and fueling infrastructure, we must also establish safe parameters for maintenance facilities which are servicing LPG fueled vehicles. Current safety standards aid in the design of maintenance facilities, but additional quantitative analysis is needed to prove safeguards are adequate and suggest improvements where needed. In this report we aim to quantify the amount of flammable mass associated with propane releases from vehicle mounted fuel vessels within enclosed garages. Furthermore, we seek to qualify harm mitigation with variable ventilations and facility layout. To accomplish this we leverage validated computational resources at Sandia National Laboratories to simulate various release scenarios representative of real world vehicles and maintenance facilities. Flow solvers are used to predict the dynamics of fuel systems as well as the evolution of propane during release events. From our simulated results we observe that both inflow and outflow ventilation locations play a critical role in reducing flammable cloud size and potential overpressure values during a possible combustion event.

03 NATURAL GAS↗

DOE OSTI2023

Coordinated Wind Power Plant and Battery Control for Active Power Services

This article considers joint active power control of wind turbines and battery storage to follow a plant-level power reference signal. The joint control dynamically curtails the energy from a subset of the wind turbines and stores or withdraws energy from the battery to meet the power reference setpoint while accounting for wind plant aerodynamic interactions, such as wake losses. As a use case, we study the performance of the controller in maintaining a constant power output over hourly periods. A wind plant operating in this way would rely much less on other grid resources to meet its contractual agreements, thereby improving grid reliability, especially in grids with high penetration of wind and solar generation. We compare the operation of the wind plant under joint active power control to standard power-maximizing control with battery support. We present an analysis of the performance of the control system architecture. To study the impact of the battery size on performance, we simulate a 50-MW wind plant supported by batteries ranging from 8 to 64?MWh. We then evaluate the over and undergeneration penalties incurred by the plant during the simulation period.

17 WIND ENERGY↗

DOE OSTI2024

Grid-Forming Storage Networks: Analytical Characterization of Damping and Design Insights

Grid-forming storage resources are critical to the operation of power grids with high renewable penetration. Over the years, there has been considerable emphasis on understanding the benefits these inverter-based storage resources bring towards managing volatility and enhancing grid reliability but little is studied about the supplementary advantages latent in their operation. This paper investigates one such application in which we explore the impact of grid-forming distributed storage in damping low-frequency inter-area oscillations. We present a detailed analysis characterizing the impact of inverter-droop and storage size on the slower eigenvalues, highlighting potential design considerations for enhancing system stability.

Chatterjee, Kaustav [BATTELLE (PACIFIC NW LAB)] (O↗

DOE OSTI2023

Utah FORGE 4-2492: Design and Implementation of Innovative Stimulation Treatments to Maximize Energy Recovery - Workshop Presentation

This is a presentation on the Design and Implementation of Innovative Stimulation Treatments to Maximize Energy Recovery Efficiency at the Utah FORGE Site project by The University of Texas at Austin, presented by Professor Mukul M. Sharma. The project's objectives were to place fractures uniformly in a horizontal well (improve cluster efficiency) to ensure uniform distribution of flow into all hydraulic fractures, maximize the area of the created fracture network, ensure connectivity of the fractures from the injector to the producer, and optimize fracture size. This presentation was featured in the Utah FORGE R&D Annual Workshop on September 7, 2023. The workshop provided a valuable opportunity to explore the progress made in each of the 17 Research and Development projects funded under Solicitation 2020-1 which aim to enhance our understanding of the crucial factors influencing the development of Enhanced Geothermal Systems (EGS) reservoirs and resources.

15 GEOTHERMAL ENERGY↗

DOE OSTI2025

Hydrogel-Immobilized Multienzyme Systems for Cell-Free Chemical Bioproduction

Cell-free gene expression systems derived from bacterial lysates enable the expression of biosynthetic pathways from inexpensive and easily prepared DNA templates. These systems hold great promise for modular and on-demand bioproduction of valuable small molecules in resource-limited settings but are constrained in their long-term stability, reusability, and deployability. In this work, we demonstrate that multiple cell-free expressed enzymes can be co-immobilized in biocompatible hydrogels made from poly(ethylene glycol) diacrylate (PEGDA) with added glycerol for enhanced gel integrity. Using small-angle X-ray scattering (SAXS), we show that the mesh size of PEGDA-glycerol hydrogels is comparable to the globular sizes of many proteins and enzymes, which could be used for protein entrapment. We found that the combination between entrapment and chemical ligation of the enzymes was effective to retain proteins. By employing a method for direct fluorescence measurement from hydrogels, we found that proteins can be retained in PEGDA-glycerol for at least a week. By separating the cell-free enzyme expression from the immobilization step, we successfully fabricated enzyme-laden hydrogels with three heterologous cell-free enzymes for the bioconversion of pyruvic acid to malic acid, an industrially valuable and versatile precursor chemical. Both heterologous and endogenous enzymes from the lysate remain functional in photo-cross-linked hydrogels and can be reused for multiple biocatalytic cycles. Moreover, we also found that the immobilized enzymes exhibit up to 1.6-fold higher activity and 2-fold longer lifetimes than free enzymes in liquid reactions. Furthermore, these results could advance the deployment of cell-free synthetic biology because they show that reusable, stable, and durable multienzyme systems can be created using readily available materials and fabrication techniques.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Recommendations to Improve the Nuclear Regulatory Commission Reactor Licensing and Approval Process

Due to the urgency around climate change and associated goals for clean energy transition, and Battelle Energy Alliance's (BEA) and Idaho National Laboratory's (INL) role as the nation's nuclear energy laboratory, numerous stakeholders have asked for BEA’s thoughts and recommendations to reduce the time and costs associated with licensing new reactors at the U.S. Nuclear Regulatory Commission (NRC). As an M&O contractor for an FFRDC, BEA is a long-term partner with the Government in seeking to achieve clean energy goals, yet has a level of independence needed to appropriately evaluate this topic. The views herein are informed by extensive BEA experience supporting nuclear energy endeavors including ongoing discussions with current and former regulators, applicants, and licensees. With this background in mind, the United States benefits from having an agency such as the NRC, which is viewed internationally as the leader in nuclear safety licensing and regulation. Nonetheless, while acknowledging the important nuclear safety role satisfied by the NRC, it is apparent that one of the most significant time and resource intensive activities for new reactor developers is the NRC licensing process. The time and cost to obtain NRC licenses add significant financial stress for new reactor projects and may result in abandonment of projects or failure to even begin new projects. The challenge is particularly acute for advanced reactors which may raise unique or new regulatory questions and may be smaller in size, resulting in a much higher proportional impact from regulatory and cost challenges. This situation presents a particularly troublesome risk for the nation given the urgency in which utilities are working to transition to clean, non-carbon-emitting energy sources like nuclear energy. Reforms to the NRC licensing process have the potential to greatly increase certainty and support the successful progress of new reactors. The NRC can retain its world-class nuclear safety reputation while becoming a world leader for regulatory efficiency and a critical enabler to the clean energy transition. This report describes potential NRC reforms, focusing on those with a statutory connection. Recognizing the potential tradeoffs with any proposed changes, the report attempts to highlight those considerations in the analysis of the reforms. The recommendations are presented as a set of options for consideration. Unless noted, they are independent options, offering stakeholders the option to select a subset for further consideration. Although difficult to calculate precise time improvements for some of the changes, the reforms have the potential for substantial improvements, perhaps even by a factor of two.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗