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Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges
Text mining in the biomedical sciences is rapidly transitioning from small-scale evaluation to large-scale application. In this article, we argue that text-mining technologies have become essential tools in real-world biomedical research. We describe four large scale applications of text mining, as showcased during a recent panel discussion at the BioCreative V Challenge Workshop. We draw on these applications as case studies to characterize common requirements for successfully applying text-mining techniques to practical biocuration needs. We note that system ‘accuracy’ remains a challenge and identify several additional common difficulties and potential research directions including (i) the ‘scalability’ issue due to the increasing need of mining information from millions of full-text articles, (ii) the ‘interoperability’ issue of integrating various text-mining systems into existing curation workflows and (iii) the ‘reusability’ issue on the difficulty of applying trained systems to text genres that are not seen previously during development. We then describe related efforts within the text-mining community, with a special focus on the BioCreative series of challenge workshops. We believe that focusing on the near-term challenges identified in this work will amplify the opportunities afforded by the continued adoption of text-mining tools. In conclusion, in order to sustain the curation ecosystem and have text-mining systems adopted for practical benefits, we call for increased collaboration between text-mining researchers and various stakeholders, including researchers, publishers and biocurators.
Principles of Neutron Scattering from Condensed Matter. By Andrew T. Boothroyd. Oxford University Press, 2020. Pp. 512. Price GBP 55.00. ISBN 9780198862314.
Neutron scattering user facilities are increasingly used by ‘non-expert’ users, opening neutron scattering to new science fields and greatly increasing the scientific impact of these facilities. This book aims to bring the needed introduction to the expanding area of neutron scattering techniques to this wider audience of scientists using neutron scattering as part of their experimental portfolio. In my opinion, it completely succeeds in that goal and provides the right balance of introduction and in-depth discussion. I also like the layout of the book, with some figures and notes in the margin making it easy to read and navigate. As a ‘long-time’ neutron scatterer, I am excited to add this book to my book shelf.
Characterizations of a hot-pressed polycrystalline spinel:Ce scintillator
Abstract Not Provided
Extending Hinge EpistemologyEds. ConstantineSandis and DanièleMoyal‐Sharrock, Anthem Press, 2022.
Not Available
The effect of relative load on barbell velocity and perceived exertion when a 25% velocity loss threshold is applied to sets of bench press
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Seismic Imaging and Inversion: Application of Linear Theory (2012), Cambridge University Press, co-authored with Bob Stolt
Extracting information from seismic data requires knowledge of seismic wave propagation and reflection. The commonly used method involves solving linearly for a reflectivity at every point within the Earth, but this book follows an alternative approach which invokes inverse scattering theory. By developing the theory of seismic imaging from basic principles, the authors relate the different models of seismic propagation, reflection and imaging - thus providing links to reflectivity-based imaging on the one hand and to nonlinear seismic inversion on the other. The comprehensive and physically complete linear imaging foundation developed presents new results at the leading edge of seismic processing for target location and identification. This book serves as a fundamental guide to seismic imaging principles and algorithms and their foundation in inverse scattering theory and is a valuable resource for working geoscientists, scientific programmers and theoretical physicists.
Press Oil Final Release Survey
There are forty-eight 55 gallon barrels filled with hydraulic oil that are candidates for release and recycle. This oil needs to be characterized prior to release. Principles of sampling as provided in MARSAME/MARSSIM approaches were used as guidance for sampling.
A publication proposal to Texas A&M Press
The purpose of this book is to profile, chapter by chapter, each of the 18 Nobel laureates who contributed to the laboratory’s wartime efforts. Through narrative, nonfiction profiles with fascinating historical photos and documents, readers will learn who these scientists were, what they accomplished, and why it mattered. The goal of this book is to educate readers by creating a published chronicle of this important history based on documents and photographs that are a part of the Los Alamos National Laboratory’s National Security Research Center. These 18 scientists have two things in common: their wartime work at Los Alamos and their Nobel Prizes. For the first time ever, both are presented as one story.
POLLUTION IN THE PRESS: Employing Text Analytics to Understand Regional Water Quality Narratives.
Abstract not provided.
Pollution in the Press: Employing Text Analytics to Understand Regional Water Quality Narratives.
Abstract not provided.
QPress: Quantum Press for Next-Generation Quantum Information Platforms
Quantum information science (QIS) holds promise for revolutionizing computation, communication, and sensing. Of course, realizing this promise requires material platforms that can host quantum bits with pre-assigned characteristics that are uniquely attuned to such functionalities. For example, quantum bits for computation should be as immune as possible to any external perturbation, controllable on short time scales and scalable. In contrast, quantum bits for local metrology should be as small as possible and sensitive to specific fields of interest. While tremendous advances in QIS have been achieved in recent years, the underlying properties of the materials that host these quantum bits remains one of the key limitations in their performance.