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At least 451 records · Page 25

Detailed observations of the plasma sheet during a substorm on April 24, 1979

Plasma, magnetic field, and energetic particle data obtained by ISEE 1 and 2 satellites for the April 24, 1979 substorm are studied in relation to the neutral line model and the boundary layer model. The ISEE 1 and 2 instruments and experiments utilized to collect the data are discussed. The major reconfiguration of the tail plasma and magnetic field plasma region, and the plasma ion flows observed support the neutral line model for interpreting substorms. The plasma ion distribution function and plasma flow are examined. The region of lobe-plasma sheet interface referred to as the separatrix layer is identified. The differences in times of plasma sheet dropout and recovery, and absence or presence of flux anisotropies are investigated. Energetic particle measurements are analyzed to study the relationship between energetic ions and plasma ions, and the velocity distributions. The data support the application of the neutral line model to the evaluation of substorms; however, the data are inconsistent with the boundary layer dynamics model.

Hones, E. W., Jr.↗

Transient periodicities in X-ray-active red dwarfs - First results from Mount Cuba and interpretation with an oscillating loop model

Results from a program at the Mount Cuba Astronomical Observatory to optically monitor transient periodicities in flare stars are reported. The data are analyzed for periodicities by means of a modified autocorrelation approach. A randomization technique is used to assess the statistical significance of periods. In AD Leonis, variability with amplitude 0.4 percent and a period of 4.1 min was detected during one run on March 6, 1991: the probability that this periodicity is due to chance is 10 exp -5. Further observations obtained on AD Leo within 1-2 hr on the same night showed no significant variability (0.01). It is shown that optical periodicities of the sort detected may be interpreted as arising from oscillations in coronal loops.

Mullan, D. J.↗

Primitive bodies - Molecular abundances in Comet Halley as probes of cometary formation environments

The most recent results on abundances of molecules in Halley's comet are examined in the context of various models for the environment in which comets formed. These environments include molecular clouds associated with star-forming regions, the solar nebula, gaseous disks around proto-planets, and combinations of these. Of all constituents in a cometary nucleus, the highly volatile molecules such as methane, ammonia, molecular nitrogen, and carbon monoxide are most sensitive to the final episode of cometary grain formation and incorporation in the comet's nucleus; hence they likely reflect at least some chemical processing in the solar nebula. Proper interpretation requires modeling of a number of physical processes including gas phase chemistry, chemistry on grain surfaces, and fractionation effects resulting from preferential incorporation of certain gases in proto-cometary grains. The abundance of methane in Halley's comet could be a key indicator of where that comet formed, provided the methane abundance on grains in star-forming regions can be observationally constrained.

Lunine, Jonathan I.↗

A Theoretical Investigation of Oxidation Efficiency of a Volatile Removal Assembly Reactor Under Microgravity Conditions

Volatile Removal Assembly (VRA) is a subsystem of the Closed Environment Life Support System (CELSS) installed in the International Space Station. It is used for removing contaminants (volatile organics) in the wastewater produced by the space station crews. The major contaminants are formic acid, ethanol, and propylene glycol. The VRA contains a slim packbed reactor (3.5 cm diameter and four 28 cm long tubes in series) to perform catalyst oxidation of wastewater at elevated pressure and temperature under microgravity conditions. In the reactor, the contaminants are burned with oxygen gas (O2) to form water and carbon dioxide (CO2) that dissolves in the water stream. Optimal design of the reactor requires a thorough understanding about how the reactor performs under microgravity conditions. The objective of this study was to develop a mathematical model to interpret experimental data obtained from normal and microgravity conditions, and to predict the performance of VRA reactor under microgravity conditions. Catalyst oxidation kinetics and the total oxygen-water contact area control the efficiency of catalyst oxidation for mass transfer, which depends on oxygen gas holdup and distribution in the reactor. The process involves bubbly flow in porous media with chemical reactions in microgravity environment. This presents a unique problem in fluid dynamics that has not been studied. Guo et al. (2004) developed a mathematical model that predicts oxygen holdup in the VRA reactor. No mathematical model has been found in the literature that can be used to predict the efficiency of catalyst oxidation under microgravity conditions.

Guo, Boyun↗

Fast ion transport by sawtooth instability in the presence of ICRF-NBI synergy in JET plasmas

JET experiments have shown that the three-ion scenarios using waves in the ion cyclotron range of frequencies (ICRF) is an efficient way to build fast ion population through beam ion acceleration by radio frequency (RF) waves. Here, such a heating scheme is applied to plasmas with at least two thermal ion species. Analysis of mixed discharges with complex heating schemes requires a workflow that allows to model thermal and fast ion transport consistently. This paper is dedicated to modelling of a mixed plasma discharge with significant fraction of fast ions and contributes to development of fast ion transport models. For interpretive analysis with the TRANSP code a JET hydrogen-deuterium (HD) plasma discharge with neutral beam injection (NBI) and ICRF heating has been chosen. The task is complicated by NBI-ICRF synergy and plasma magnetohydrodynamic activity, like sawtooth crashes. D beam ions accelerated by RF waves form a high energy tail in fast ion distribution. Significant difference between the neutron rate computed by TRANSP and measured one is observed if the same diffusivity for electrons and ions is assumed. Sensitivity studies show that uncertainties in input plasma parameters and thermal ion transport models are crucial for modelling mixed plasma discharges and increased D transport is required to reach the plasma composition consistent with diagnostic measurements at the plasma edge. Fast ion redistribution by a sawtooth instability is characterised by non-resonant transport due to reconnection of magnetic field lines and resonant transport caused by resonance interaction between the instability and fast ions. With ORBIT simulations it has been shown that resonant interaction strongly affects fast ions of high energies, like beam ions accelerated by RF waves and fusion products. For the considered case, fast ion profiles simulated by ORBIT remain peaked after the sawtooth crashes.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Bio-Optics of the Chesapeake Bay from Measurements and Radiative Transfer Calculations

We combined detailed bio-optical measurements and radiative transfer (RT) modeling to perform an optical closure experiment for optically complex and biologically productive Chesapeake Bay waters. We used this experiment to evaluate certain assumptions commonly used when modeling bio-optical processes, and to investigate the relative importance of several optical characteristics needed to accurately model and interpret remote sensing ocean-color observations in these Case 2 waters. Direct measurements were made of the magnitude, variability, and spectral characteristics of backscattering and absorption that are critical for accurate parameterizations in satellite bio-optical algorithms and underwater RT simulations. We found that the ratio of backscattering to total scattering in the mid-mesohaline Chesapeake Bay varied considerably depending on particulate loading, distance from land, and mixing processes, and had an average value of 0.0128 at 530 nm. Incorporating information on the magnitude, variability, and spectral characteristics of particulate backscattering into the RT model, rather than using a volume scattering function commonly assumed for turbid waters, was critical to obtaining agreement between RT calculations and measured radiometric quantities. In situ measurements of absorption coefficients need to be corrected for systematic overestimation due to scattering errors, and this correction commonly employs the assumption that absorption by particulate matter at near infrared wavelengths is zero.

Tzortziou, Maria↗

Solar Flare Ribbon Fronts. I. Constraining Flare Energy Deposition with IRIS Spectroscopy

Spectral lines formed at lower atmospheric layers show peculiar profiles at the "leading edge" of ribbons during solar flares. In particular, increased absorption of the BBSO/GST He I λ10830 line, as well as broad and centrally reversed profiles in the spectra of the Mg II and C II lines observed by the IRIS satellite, has been reported. In this work, we aim to understand the physical origin of such peculiar IRIS profiles, which seem to be common of many, if not all, flares. To achieve this, we quantify the spectral properties of the IRIS Mg II profiles at the ribbon leading edge during four large flares and perform a detailed comparison with a grid of radiative hydrodynamic models using the RADYN+FP code. We also studied their transition region (TR) counterparts, finding that these ribbon front locations are regions where TR emission and chromospheric evaporation are considerably weaker compared to other parts of the ribbons. Based on our comparison between the IRIS observations and modeling, our interpretation is that there are different heating regimes at play in the leading edge and the main bright part of the ribbons. More specifically, we suggest that bombardment of the chromosphere by more gradual and modest nonthermal electron energy fluxes can qualitatively explain the IRIS observations at the ribbon leading front, while stronger and more impulsive energy fluxes are required to drive chromospheric evaporation and more intense TR emission in the bright ribbon. Our results provide a possible physical origin for the peculiar behavior of the IRIS chromospheric lines in the ribbon leading edge and new constraints for the flare models.

Solar flares↗

TCR-H: explainable machine learning prediction of T-cell receptor epitope binding on unseen datasets

Artificial-intelligence and machine-learning (AI/ML) approaches to predicting T-cell receptor (TCR)-epitope specificity achieve high performance metrics on test datasets which include sequences that are also part of the training set but fail to generalize to test sets consisting of epitopes and TCRs that are absent from the training set, i.e., are ‘unseen’ during training of the ML model. We present TCR-H, a supervised classification Support Vector Machines model using physicochemical features trained on the largest dataset available to date using only experimentally validated non-binders as negative datapoints. TCR-H exhibits an area under the curve of the receiver-operator characteristic (AUC of ROC) of 0.87 for epitope ‘hard splitting’ (i.e., on test sets with all epitopes unseen during ML training), 0.92 for TCR hard splitting and 0.89 for ‘strict splitting’ in which neither the epitopes nor the TCRs in the test set are seen in the training data. Furthermore, we employ the SHAP (Shapley additive explanations) eXplainable AI (XAI) method for post hoc interrogation to interpret the models trained with different hard splits, shedding light on the key physiochemical features driving model predictions. TCR-H thus represents a significant step towards general applicability and explainability of epitope:TCR specificity prediction.

60 APPLIED LIFE SCIENCES↗

Solar Corona Explorer: A mission for the physical diagnosis of the solar corona

Mission objectives and spacecraft requirements for the Solar Corona Explorer (SCE), a proposed free flying, unmanned solar research craft to be tenatively launched in 1987, were defined. The SCE's purpose is to investigate structure, dynamics and evolution of the corona, globally and in the required physical detail, to study the close coupling between the inner corona and the heliosphere. Investigative objectives are: (1) to understand the corona as the source of varying interplanetary plasma and of varying solar X-ray and extreme ultraviolet fluxes; (2) to develop the capabilities to model the corona with sufficient precision to forecast the Earth's variable environment in space, on the scales from weeks to years; (3) to develop an understanding of the physical processes that determine the dynamics and physical state of the coronal plasma, particularly acceleration processes; and (4) to develop insight and test theory on the Sun applicable to stellar coronae and winds, and in particular, to understand why cool stars put such a large fraction of their energy into X-rays. Considered related factors are: (1) duration of the mission; (2) onboard measuring instrumentation; (3) ground support equipment and procedures; and (4) programs of interpretation and modeling.

Source record↗

Quantification of Cas9 binding and cleavage across diverse guide sequences maps landscapes of target engagement

The RNA-guided nuclease Cas9 has unlocked powerful methods for perturbing both the genome through targeted DNA cleavage and the regulome through targeted DNA binding, but limited biochemical data have hampered efforts to quantitatively model sequence perturbation of target binding and cleavage across diverse guide sequences. We present scalable, sequencing-based platforms for high-throughput filter binding and cleavage and then perform 62,444 quantitative binding and cleavage assays on 35,047 on- and off-target DNA sequences across 90 Cas9 ribonucleoproteins (RNPs) loaded with distinct guide RNAs. We observe that binding and cleavage efficacy, as well as specificity, vary substantially across RNPs; canonically studied guides often have atypically high specificity; sequence context surrounding the target modulates Cas9 on-rate; and Cas9 RNPs may sequester targets in nonproductive states that contribute to “proofreading” capability. Lastly, we distill our findings into an interpretable biophysical model that predicts changes in binding and cleavage for diverse target sequence perturbations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Implementation of a 9-point stencil in SOLPS-ITER and implications for Alcator C-Mod divertor plasma simulations

The SOLPS-ITER code suite is used worldwide for plasma edge modeling, the interpretation of experiments, as well as for the design of the ITER divertor. The numerical scheme of the plasma solver of the code, B2.5, is based on the assumption of perfectly field-aligned grids, while in practice grids are often strongly distorted to match divertor target shapes. Neglecting these grid distortion leads to qualitatively and quantitatively incorrect results for fluid neutral simulations, and may affect results in cold (detached) divertors even when using kinetic neutral simulations. In this contribution, we present the first results of a newly implemented 9-point stencil in B2.5 to properly handle misaligned grids. The new scheme is then applied to fluid neutral simulations of a well-diagnosed and previously modeled Alcator C-Mod discharge. Results are compared with the original 5-point scheme neglecting grid distortion effects, as well as with simulations including a full kinetic neutral model. We conclude that the 9-point stencil is essential to correctly model the transport of fluid neutrals on distorted grids, and to capture the effects of divertor closure on the fluid neutral behavior.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Studies for the Loss of Atomic and Molecular Species from IO

The general objective of this project has been to advance our theoretical understanding of lo's atmosphere and how various atomic and molecular species are lost from this atmosphere and are distributed in the circumplanetary environment of Jupiter. This grant has provided support for the activities of Dr. Michael Combi at the University of Michigan to serve as a small part in collaboration with a larger project awarded to Atmospheric & Environmental Research, Inc., with primary principal investigator Dr. William H. Smyth. Dr. Combi is the Principal Investigator and Project Manager for the Michigan grant NAG5-6187. This Michigan grant has provided for a continuation of a collaboration between Drs. Smyth and Combi in related efforts beginning in 1981, and with the object to develop and apply sophisticated theoretical models to interpret and to relate a number of new and exciting observations for the atmospheric gases of the satellite. The ability to interpret and then to relate through the theoretical fabric a number of these otherwise independent observations are a central strength of this program. This comprehensive approach provides a collective power, extracting more from the sum of the parts and seeing beyond various limitations that are inherent in any one observation. Although the approach is designed to unify, the program is divided into well-defined studies for the likely dominant atmospheric gases involving species of the SO2 family (SO2, SO, O2, S and O) and for the trace atmospheric gas atomic sodium and a likely escaping molecular ion NaX(+) (where Na(X) is the atmospheric molecule and X represents one or more atoms).Attachments: IO's sodium corona and spatially cloud: a consistent flux speed distribution. and Io's plasma environment during the Galileo flyby: global three-dimensional MHD modeling with adaptive mesh refinement.

Combi, Michael R.↗

Forced and Free Intra-Seasonal Variability Over the South Asian Monsoon Region Simulated by 10 AGCMs

This study examines intra-seasonal (20-70 day) variability in the South Asian monsoon region during 1997/98 in ensembles of 10 simulations with 10 different atmospheric general circulation models. The 10 ensemble members for each model are forced with the same observed weekly sea surface temperature (SST) but differ from each other in that they are started from different initial atmospheric conditions. The results show considerable differences between the models in the simulated 20-70 day variability, ranging from much weaker to much stronger than the observed. A key result is that the models do produce, to varying degrees, a response to the imposed weekly SST. The forced variability tends to be largest in the Indian and western Pacific Oceans where, for some models, it accounts for more than 1/4 of the 20-70 day intra-seasonal variability in the upper level velocity potential during these two years. A case study of a strong observed MJO (intraseasonal oscillation) event shows that the models produce an ensemble mean eastward propagating signal in the tropical precipitation field over the Indian Ocean and western Pacific, similar to that found in the observations. The associated forced 200 mb velocity potential anomalies are strongly phase locked with the precipitation anomalies, propagating slowly to the east (about 5 m/s) with a local zonal wave number two pattern that is generally consistent with the developing observed MJO. The simulated and observed events are, however, approximately in quadrature, with the simulated response 2 leading by 5-10 days. The phase lag occurs because, in the observations, the positive SST anomalies develop upstream of the main convective center in the subsidence region of the MJO, while in the simulations, the forced component is in phase with the SST. For all the models examined here, the intraseasonal variability is dominated by the free (intra-ensemble) component. The results of our case study show that the free variability has a predominately zonal wave number one pattern, and has propagation speeds (10 - 15 m/s) that are more typical of observed MJO behavior away from the convectively active regions. The free variability appears to be synchronized with the forced response, at least, during the strong event examined here. The results of this study support the idea that coupling with SSTs plays an important, though probably not dominant, role in the MJO. The magnitude of the atmospheric response to the SST appears to be in the range of 15% - 30% of the 20-70 day variability over much of the tropical eastern Indian and western Pacific Oceans. The results also highlight the need to use caution when interpreting atmospheric model simulations in which the prescribed SST resolve MJO time scales.

Wu, Man Li C.↗

Electrochemical Model Assessment of Strategies for Fast Charge

The United States Department of Energy (DOE) has identified extreme fast charging (XFC) as a critical challenge that must be overcome in order to achieve widespread adoption of electric vehicles. DOE’s eXtreme Fast Charge and Cell Evaluation (XCEL) program seeks to reduce charge time to 10-15 minutes for a 200+ Wh/kg Li-ion battery. This presentation for DOE’s Vehicle Technologies Program Annual Merit Review summarizes the XCEL team’s work developing electrochemical models to interpret data and applying them to identify best strategies to achieve fast charge. Strategies include advanced electrode architectures, elevated temperature charging, novel charge protocols, advanced electrolytes, thermal management and suppression of heterogeneities that cause early onset of the damaging Li plating side reaction.

47 OTHER INSTRUMENTATION↗

The effect of dust bias on the census of neutral gas and metals in the high-redshift Universe due to SDSS-II quasar colour selection

ABSTRACT We present a systematic study of the impact of a dust bias on samples of damped Ly α absorbers (DLAs). This bias arises as an effect of the magnitude and colour criteria utilized in the Sloan Digital Sky Survey (SDSS) quasar target selection up until data release 7 (DR7). The bias has previously been quantified assuming only a contribution from the dust obscuration. In this work, we apply the full set of magnitude and colour criteria used up until SDSS-DR7 in order to quantify the full impact of dust biasing against dusty and metal-rich DLAs. We apply the quasar target selection algorithm on a modelled population of intrinsic colours, and by exploring the parameter space consisting of redshift, ($z_{\rm{\small QSO}}$and zabs), optical extinction, and H i column density, we demonstrate how the selection probability depends on these variables. We quantify the dust bias on the following properties derived for DLAs at z ≈ 3: the incidence rate, the mass density of neutral hydrogen and metals, and the average metallicity. We find that all quantities are significantly affected. When considering all uncertainties, the mass density of neutral hydrogen is underestimated by 10–50 per cent, and the mass density in metals is underestimated by 30–200 per cent. Lastly, we find that the bias depends on redshift. At redshift z = 2.2, the mass density of neutral hydrogen and metals might be underestimated by up to a factor of 2 and 5, respectively. Characterizing such a bias is crucial in order to accurately interpret and model the properties and metallicity evolution of absorption-selected galaxies.

Krogager, Jens-Kristian↗

Applications of explainable artificial intelligence in renewable energy research

Researchers in renewable energy are applying deep learning (DL) to a variety of problems from diverse renewable energy domains, such as biofuels, wind, solar, power systems, buildings, vehicles, and transportation systems. Improvements in accuracy may be demonstrated using DL in laboratory settings. However, the lack of interpretability of DL models poses a practical limitation to their utility in advancing scientific knowledge and in the deployment of DL models in safety-critical energy systems. In this article, we discuss explainable artificial intelligence (XAI) as one pathway toward more interpretable DL models. We explore a brief timeline of U.S. national laboratory interest in XAI, an overview and taxonomy of methods in the field of XAI, and a selection of applications across renewable energy research domains. We conclude by highlighting pivotal areas where XAI can accelerate innovation in artificial intelligence for renewable energy research and other essential future directions.

97 MATHEMATICS AND COMPUTING↗

Blackout Diffusion: Generative Diffusion Models in Discrete-State Spaces

Typical generative diffusion models rely on a Gaussian diffusion process for training the backward transformations, which can then be used to generate samples from Gaussian noise. However, real world data often takes place in discrete-state spaces, including many scientific applications. Here, we develop a theoretical formulation for arbitrary discrete-state Markov processes in the forward diffusion process using exact (as opposed to variational) analysis. We relate the theory to the existing continuous-state Gaussian diffusion as well as other approaches to discrete diffusion, and identify the corresponding reverse-time stochastic process and score function in the continuous-time setting, and the reverse-time mapping in the discrete-time setting. As an example of this framework, we introduce “Blackout Diffusion”, which learns to produce samples from an empty image instead of from noise. Numerical experiments on the CIFAR-10, Binarized MNIST, and CelebA datasets confirm the feasibility of our approach. Generalizing from specific (Gaussian) forward processes to discrete-state processes without a variational approximation sheds light on how to interpret diffusion models, which we discuss.

Santos, Javier E.↗

The weakly nonlinear response and nonaffine interpretation of the Johnson–Segalman/Gordon–Schowalter model

We derive new analytical solutions for the non-affine Johnson-Segalman/Gordon-Schowalter (JS/GS) constitutive equation with a general relaxation kernel in medium-amplitude oscillatory shear (MAOS) deformation. The results show time-strain separable (TSS) nonlinearity, therefore providing new physically-meaningful interpretation to the heuristic TSS nonlinear parameter in MAOS. The upper-convected, lower-convected, and corotational Maxwell models are all subsets of the results presented here. The model assumes that the microscale elements causing stress in the material slip compared to the continuum deformation. We introduce a visualization of the non-affine deformation field that acts on stress-generating elements to reinforce the hysical interpretation of the JS/GS class of models. Lastly, a case study is presented where previously published results, from fitting TSS models to MAOS data, can be re-interpreted based on the concept of non-affine motion of the JS/GS framework.

36 MATERIALS SCIENCE↗