Closing the Gap Together - Connecting Communities with NASA Data through Earthdata Partnership
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Reliable, low latency delivery of high quality global flux and concentration information is a growing but still unmet need to advance expanding measurement, monitoring, reporting, and verification efforts that underpin federal climate mitigation strategies. Here we present on progress toward developing space-based greenhouse gas (GHG) monitoring systems that can provide comprehensive information trailing real time by a matter of weeks to a few months. Through support from its Carbon Monitoring System (CMS) program, NASA has developed the capability to assimilate XCO 2 retrievals from the Orbiting Carbon Observatory, 2 (OCO 2 ) into the Goddard Earth Observing System (GEOS) Constituent Data Assimilation System (CoDAS) to create gap-filled, three-dimensional (3D) estimates of CO 2 mixing ratio. When observations are unavailable, concentration fields are further informed by observationally-informed bottom-up flux packages that incorporate remotely sensed fire, nighttime lights, and vegetation observations combined with estimates of atmospheric growth rate based on surface in situ data. The 3D nature of these datasets supports evaluation with independent aircraft data to improve confidence in satellite data, development of new regional modeling approaches, and quantification of the climate impacts of GHGs. The system has recently been expanded to assimilate XCH 4 from ESA’s TROPOspheric Monitoring Instrument (TROPOMI) instrument and is supported by companion efforts to improve delivery of estimates of bottom-up land and ocean fluxes. The quasi-operational GEOS-GHG system is contributing to the recently announced U.S. Greenhouse Gas Center (GHG Center) by delivering information on recent changes in CO 2 and CH 4 emissions and concentrations to support stakeholder and research communities. In this presentation, we provide an overview of the current system configured to support the GHG Center. We highlight examples of how this data contributes to broader NASA initiatives including the Earth Information Center, an innovative virtual and physical exhibit designed to show how NASA data helps the nation combat climate change. We conclude by discussing how innovations in CMS research can address remaining data gaps and modeling challenges to advance operational GHG monitoring in the future.
The amount of hydrological data available from NASA remote sensing and modeling systems is vast and ever-increasing;but, one challenge persists:increasing the usefulness of these data for, and thus their use by, end user communities. The Hydrology Data and Information Services Center (HDISC), part of the Goddard Earth Sciences DISC, has continually worked to better understand the hydrological data needs of different end users, to thus better able to bridge the gap between NASA data and end user communities. One effective strategy is integrating the data in to end user community tools and environments. There is an ongoing collaborative effort between NASA HDISC, NASA Hydrological Sciences Branch, and CUAHSI to integrate NASA gridded hydrology data in to the CUAHSI Hydrologic Information System (HIS).
Accurate information about the reflectivity of the Earth's surface is required for most satellite retrievals of atmospheric composition, and this information is generally taken from monthly surface reflectivity climatology that neglects angular dependence. Previously we introduced Geometry-dependent Lambertian-equivalent surface reflectivity (GLER) which captures solar and satellite viewing angle dependence as well as daily and seasonal changes. GLER is calculated from simulations of Rayleigh-only top-of-atmosphere (TOA) radiances over non-Lambertian surfaces. We use NASA's Moderate Resolution Imaging Spectroradiometer (MODIS) bidirectional reflectance distribution function (BRDF) product over land and the wind-dependent Cox–Munk wave-facet slope distribution including water-leaving radiance over water to accounts for surface BRDF. We have developed global GLER product, previously for the Ozone Monitoring Instrument (OMI) and recently for Sentinel-5 Precursor (S5P) TROPOspheric Monitoring Instrument (TROPOMI) with several new improvements and updates. We have implemented the near real time daily V006 MODIS MCD43C1 BRDF data and gap-filled with a daily BRDF coefficient climatology created from 2002-2017 V006 MCD43GF data. The NASA’s Global Modelling Initiative hourly 0.25 x 0.25 deg Replay simulations are used for more accurate determination of pixel specific terrain pressure. To improve detection of seasonal snow/ice scenes, we use the 4-km snow cover product from the Interactive Multi-sensor Snow and Ice Mapping System (IMS). Finally, we use an improved version of the vector linearized discrete ordinate radiative transfer (VLIDORT) for update of the top-of-atmosphere (TOA) radiance look-up-tables (LUTs). We demonstrate how the use of GLER is beneficial to TROPOMI’s high spatial resolution (up to 3.5 km x 3.5 km) measurements to monitor atmospheric trace gas pollutants down to the sub-city scale.
This data contains output from the pumphouse eddy covariance tower that includes shortwave radiation, longwave radiation, net radiation, air temperature, relative humidity, as well as sensible, latent, and ground heat fluxes. Also included is calculated evapotranspiration from the latent heat flux and the latent heat of vaporization. All data are on a daily timestep and displayed in Mountain Time. The data has been processed, and Quality Assurance / Quality Control (QA/QC) was done, but any daily gaps in the data have not been filled in. This research was funded by the Department of Energy and performed as part of the Watershed Function Scientific Focus Area. This research aimed to constrain evapotranspiration in a high-elevation catchment.The dataset includes one comma-separated values (CSV) data file (EddyCovariance_MeteorlogicalVariables_CrestedButtePumphouse.csv). Additionally, three metadata CSV files are included: (1) location metadata file (locations.csv), which contains location metadata and coordinates; (2) a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata; and (3) a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type.This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.
BACKGROUND To support NASA’s Lifetime Surveillance of Astronaut Health (LSAH) project, Individual Exposure Profiles (IEPs) were developed to record an astronaut’s pre-, in-, and post-NASA exposures. NASA astronauts were invited to participate in a one-time guided interview to review known hazard exposures and medical history documented in NASA records and to add new information not otherwise reported. The purpose of the IEP project was to determine if any significant information was gained from these interviews and identify potential trends in long-term health. METHODOLOGY The pre-filled exposure profile data was extracted from several sources including medical records, biographies, and LSAH records. The information that was pre-filled before the interview included occupational exposures prior to selection to the Astronaut Corps, during active astronaut career (e.g., EVA and ground-based training, on-orbit exposures), and after active career. The IEPs also contained relevant medical history (e.g., audiometry, illnesses, injuries) and significant non-occupational exposures. 189 interviews were conducted from 2012-2014. A Microsoft Access database was created to store the information collected in the IEPs before and after the interviews. The database houses the information from the IEPs to track the updates made to the original data. By analyzing which astronauts supplied additional information and which kinds of data were consistently added, potential gaps and trends in missing data may be identified. In designing the database, an efficient structure was implemented for ease of inputting data and to create variables that would generate quantifiable data. Creating standardized variables within the structure helped ease the process of inputting, organizing data, and analyzing data. Additional updates/data were denoted and were categorized by type of update. The categories identified were “Confirmed”, “Confirmed & Supplemented”, “Supplemented”, “Denied”, “Denied & Supplemented”, and “Other”. STATISTICAL ANALYSIS AND RESULTS To assess frequency of exposure updates, descriptive statistics will be generated and stratified by relevant factors such as astronaut selection decade, age at selection, and program/era. Hypothesis testing will be performed to understand the associations between updates to exposure information and population characteristics.
ABSTRACT GapMind is a Web-based tool for annotating amino acid biosynthesis in bacteria and archaea ( http://papers.genomics.lbl.gov/gaps ). GapMind incorporates many variant pathways and 130 different reactions, and it analyzes a genome in just 15 s. To avoid error-prone transitive annotations, GapMind relies primarily on a database of experimentally characterized proteins. GapMind correctly handles fusion proteins and split proteins, which often cause errors for best-hit approaches. To improve GapMind’s coverage, we examined genetic data from 35 bacteria that grow in defined media without amino acids, and we filled many gaps in amino acid biosynthesis pathways. For example, we identified additional genes for arginine synthesis with succinylated intermediates in Bacteroides thetaiotaomicron , and we propose that Dyella japonica synthesizes tyrosine from phenylalanine. Nevertheless, for many bacteria and archaea that grow in minimal media, genes for some steps still cannot be identified. To help interpret potential gaps, GapMind checks if they match known gaps in related microbes that can grow in minimal media. GapMind should aid the identification of microbial growth requirements. IMPORTANCE Many microbes can make all of the amino acids (the building blocks of proteins). In principle, we should be able to predict which amino acids a microbe can make, and which it requires as nutrients, by checking its genome sequence for all of the necessary genes. However, in practice, it is difficult to check for all of the alternative pathways. Furthermore, new pathways and enzymes are still being discovered. We built an automated tool, GapMind, to annotate amino acid biosynthesis in bacterial and archaeal genomes. We used GapMind to list gaps: cases where a microbe makes an amino acid but a complete pathway cannot be identified in its genome. We used these gaps, together with data from mutants, to identify new pathways and enzymes. However, for most bacteria and archaea, we still do not know how they can make all of the amino acids.
The intercalibration between a broadband and a hyperspectral satellite Earth observation system requires the convolution of the hyperspectral data with the spectral response functions (SRFs) of the corresponding broadband channels. There are two potential issues associated with the convolution procedure. First, the finite resolution of a hyperspectral spectrum, that is, the deviation from the highly accurate line-by-line monochromatic radiances, will contribute to convolution errors. The magnitude of the errors depends on the spectral resolution and the SRF shape of the hyperspectral instrument. This type of the convolution error has not been well recognized, and there is a lack of corresponding discussion in most published papers. Although it is small as compared with the instrument accuracy of existing hyperspectral sounders, the error is deemed to be signicant when it is compared with the stringent calibration requirement imposed by future climate missions like the Climate Absolute Radiance and Refractivity Observatory (CLARREO). Second, some broadband channels are insufficiently covered by the hyperspectral data, causing spectral gaps that lead to convolution errors. Although several methods have been developed to fill the spectral gaps and hence compensate for the second type of convolution error, the correction accuracy may still need improvement especially when a large spectral gap needs to be lled. This paper presents a methodology to accurately quantify and compensate for both types of convolution errors. This methodology utilizes the available hyperspectral information to correct the scene-dependent convolution errors due to either the limited spectral resolution or spectral gaps. We use simulations to characterize the intercalibration errors between the Moderate resolution Imaging Spectroradiometer (MODIS) and current operational infrared sounders. We demonstrate that convolution errors can be effectively removed to meet the highly accurate intersatellite calibration requirement proposed by the Climate Absolute Radiance and Refractivity Observatory. Our methodology is also validated using real satellite data for the intercalibration between Aqua MODIS and Aqua Atmospheric Infrared Sounders (AIRS). Our study demonstrates that the accurate characterization and correction for the convolution errors greatly reduces the scene-dependent and spectrally dependent errors, being critical to the consistency check between Infrared Atmospheric Sounding Interferometer (IASI) and AIRS using the double-difference method. The convolution correction also facilitates the evaluation for other intercalibration errors (e.g., the drift of MODIS SRFs). Our derived SRF shift values from MODIS-AIRS (after convolution error corrections) and from MODIS-IASI intercalibration are consistent with each other. We further extend the methodology to study the calibration of a broadband channel which is either completely or largely uncovered bya hyperspectral measurement.The large spectral gap-filling methodology is validated by demonstrating the accurate prediction of the MODIS radiance of band 29 using the Cross-track Infrared Sounder spectra, with the real IASI spectral data being used as the reference.
Non-targeted analysis of small molecules and metabolites in unknown, complex samples using liquid chromatography-tandem mass spectrometry remains challenging. One of the main bottlenecks is the extensive unannotated regions of metabolomics mass spectrometry data, resulting in knowledge gaps. Small molecule annotation in mass spectrometry data has conventionally relied on reference standards and libraries for compound identification and confirmation, which can constrain compound identification to those molecules already known, thus limiting the ability to discover new knowledge and new markers. Retention time prediction can facilitate and expedite unknown compound identification in non-targeted analysis of complex metabolomics samples. Additionally, accurate retention time predictions can also inform sample mixture design for LC-MS/MS analyses. However, current machine learning-based methods for retention time prediction are typically developed for specific chromatographic platforms and are not generalizable across scales. And while technologies and methods to improve reference-free metabolite identification for more comprehensive annotation of unknowns has received much attention, development of the same for quantitation without reference standards has been much more limited, despite its importance in toxicological, environmental, food safety, forensics, and clinical applications. We believe that a reference-free quantitation strategy that exploits mass spectrometry data already collected for reference-free identification can provide much more insight on unknowns, and move the metabolomics field for more complete unknowns characterization. As such, we pursue two efforts to improve upon current state-of-the-art methods in non-targeted analysis: (1) machine learning-based retention time prediction and (2) statistical design of experiments framework for reference-free quantitation. In this work, we develop and demonstrate (1) a generalizable retention time prediction capability across chromatographic conditions and scales, and (2) a statistical design-based framework for response factor contribution elucidation and reference-free quantitation. Evaluation of our retention time prediction model, PrediToR, showed approximately 24% improvement over current models, and we observed approximately 10X improvement in concentration estimation accuracy from our statistical design-based response factor model over a primarily ionization efficiency-based model. We expect that future efforts to improve upon these new capabilities will further advance non-targeted analysis of small molecules towards truly reference-free metabolomics.
As Automated Vehicle (AV) services proliferate, data sharing between AV operators and municipal agents is assuming greater importance. Information on the dynamic nature of the road system such as incidents to avoid, weather hazards (such as flooding), construction and detours, as well as active safety concerns (e.g. - riots) is important for AV operators. Such information cannot be directly sensed from a vehicle's sensor array, but instead must be communicated in a timely and trustworthy channel. Municipalities are interested in pushing this information to AV operators to support emergency response efforts, reduce traffic in construction zones, and generally improve operation of the system. Similarly, information on vehicle safety such as disengagements, as well as critical information on the use of roadway system (trips, origin and destination patterns) are important performance factors for municipalities to understand utilization and plan for appropriate infrastructure. As mobility shifts to on-demand options, the need for safe and coordinated pick-up and drop-off zones will increase (potentially reducing parking needs). For all of these reasons, communication flows between AV operators and municipalities are becoming increasingly important. This paper investigates the functions, emerging practices and protocols for sharing of such critical data, and identifies gaps in and challenges in existing practices. Additionally, case studies are used to highlight the impacts of data sharing between AV operators and municipalities.
Horizontal fluxes of atmospheric water vapor are studied for summer months during 1989 and 1992 over North and South America based on analyses from European Center for Medium Range Weather Forecasts, US National Meteorological Center, and United Kingdom Meteorological Office. The calculations are performed over 20 deg by 20 deg box-shaped midlatitude domains located to the east of the Rocky Mountains in North America, and to the east of the Andes Mountains in South America. The fluxes are determined from operational center gridded analyses of wind and moisture. Differences in the monthly mean moisture flux divergence determined from these analyses are as large as 7 cm/month precipitable water equivalent over South America, and 3 cm/month over North America. Gridded analyses at higher spatial and temporal resolution exhibit better agreement in the moisture budget study. However, significant discrepancies of the moisture flux divergence computed from different gridded analyses still exist. The conclusion is more pessimistic than Rasmusson's estimate based on station data. Further analysis reveals that the most significant sources of error result from model surface elevation fields, gaps in the data archive, and uncertainties in the wind and specific humidity analyses. Uncertainties in the wind analyses are the most important problem. The low-level jets, in particular, are substantially different in the different data archives. Part of the reason for this may be due to the way the different analysis models parameterized physical processes affecting low-level jets. The results support the inference that the noise/signal ratio of the moisture budget may be improved more rapidly by providing better wind observations and analyses than by providing better moisture data.
Data-driven modeling of incursions of high-consequence, transboundary pathogens of animals is a critical component of veterinary preparedness. However, simplifying assumptions and excessive use of proxy measures to compensate for gaps in available data may compromise modeled outcomes. The current investigation was prospectively designed to address two major gaps in current knowledge of foot-and-mouth disease virus (FMDV) pathogenesis in pigs: the end (duration) of the infectious period and the viability of FMDV in decaying carcasses. By serial exposure of sentinel groups of pigs to the same group of donor pigs infected by FMDV A24 Cruzeiro, it was demonstrated that infected pigs transmitted disease at 10 days post infection (dpi), but not at 15 dpi. Assuming a latent period of 1 day, this would result in a conservative estimate of an infectious duration of 9 days, which is considerably longer than suggested by a previous report from an experiment performed in cattle. Airborne contagion was diminished within two days of removal of infected pigs from isolation rooms. FMDV in muscle was inactivated within 7 days in carcasses stored at 4°C. By contrast, FMDV infectivity in vesicle epithelium harvested from intact carcasses stored under similar conditions remained remarkably high until the study termination at 11 weeks post mortem. The output from this study consists of experimentally determined data on contagion associated with FMDV-infected pigs. This information may be utilized to update parameterization of models used for foot-and-mouth disease outbreak simulations involving areas of substantial pig production.
Freshwaters account for 0.8% of Earth's surface area, yet support >10% of known plant and animal species making them disproportionately biodiverse. Modern molecular techniques have begun to reveal microbial diversity, but application of these approaches to address global microbial biogeography is relatively unknown in freshwaters. Our aim was to identify gaps in microbial data coverage along climatic and landscape disturbance gradients and among terrestrial biomes and hydrographic regions for all freshwater ecosystems and three freshwater habitat types: lakes and reservoirs (lentic); streams and rivers (lotic); and wetlands. We reviewed literature on microbial diversity in freshwaters surveyed using 16S ribosomal RNA sequencing which identify microbial taxa. We georeferenced survey locations and used a geographic information system to identify and map gaps in survey coverage using open-source data for climate, landscape disturbance, terrestrial biomes, and freshwater ecoregions. In our study, we compiled 3,425 georeferenced survey locations reported from 963 studies. Streams were surveyed most frequently (60.8% of survey locations), followed by lakes (33.5%) and wetlands (5.6%). Surveys were concentrated in North America, central and western Europe, and Southeast Asia; 35% of freshwater ecoregions were surveyed at least once across freshwater habitat types, whereas 23%, 23%, and 12% were surveyed at least once for lentic, lotic, and wetland habitat types, respectively. The climatic gap analysis indicated coverage is high for temperate regions but lacking in the tropics and Arctic, particularly for wetland ecosystems. Our assessment revealed high climatic coverage of freshwater microbial diversity knowledge, but expansive ecoregional gaps attributable to biased sampling near research institutions in North America, western Europe, and China. Future surveys should target ecoregions in Africa, South America, Central Asia, Australia, and Antarctica. An essential next step will be to curate and disseminate sequencing efforts to facilitate the study of processes driving global diversity patterns.
Abstract Given the pressing challenges posed by climate change, it is crucial to develop a deeper understanding of the impacts of escalating drought and heat stress on terrestrial ecosystems and the vital services they offer. Soil and plant water potential play a pivotal role in governing the dynamics of water within ecosystems and exert direct control over plant function and mortality risk during periods of ecological stress. However, existing observations of water potential suffer from significant limitations, including their sporadic and discontinuous nature, inconsistent representation of relevant spatio-temporal scales and numerous methodological challenges. These limitations hinder the comprehensive and synthetic research needed to enhance our conceptual understanding and predictive models of plant function and survival under limited moisture availability. In this article, we present PSInet (PSI—for the Greek letter Ψ used to denote water potential), a novel collaborative network of researchers and data, designed to bridge the current critical information gap in water potential data. The primary objectives of PSInet are as follows. (i) Establishing the first openly accessible global database for time series of plant and soil water potential measurements, while providing important linkages with other relevant observation networks. (ii) Fostering an inclusive and diverse collaborative environment for all scientists studying water potential in various stages of their careers. (iii) Standardizing methodologies, processing and interpretation of water potential data through the engagement of a global community of scientists, facilitated by the dissemination of standardized protocols, best practices and early career training opportunities. (iv) Facilitating the use of the PSInet database for synthesizing knowledge and addressing prominent gaps in our understanding of plants’ physiological responses to various environmental stressors. The PSInet initiative is integral to meeting the fundamental research challenge of discerning which plant species will thrive and which will be vulnerable in a world undergoing rapid warming and increasing aridification.
The significance of stratospheric odd-nitrogen compounds in Antarctic ozone depletion studies has prompted an increase in Antarctic activities. Although several species are being studied, work has concentrated on the acquisition of NO2 data. Ground-based measurements of stratospheric column NO2 have been made at Arrival Heights, Antarctica, since spring 1982, with some gaps in the data base. Additional data has been acquired since February 1986 at Pole Station and Halley Bay, thus providing a chain of stations across the continent. The technique used is that of absorption spectroscopy in several wavelength regions, although here only those measurements are reported in the 430 to 450 nm region where strongly structured absorption been determined experimentally. However, theory features due to NO2 are identified in scattered sunlight in the zenith sky. Operation of a moon-tracking system at Arrival Heights has provided some additional data during the polar night. Previous analyses have shown that the NO2 column observed from the ground is strongly influenced by the season, and by the location of the site with respect to that of the polar vortex. The column amount correlates strongly with stratospheric temperature at about 70 mbar. The present data set further illustrates these features, and demonstrates both the strengths and qualifications apparent in the technique.
A brief review is given of the unsteadiness of shock wave/turbulent boundary layer interaction. The focus is on interactions generated by swept and unswept compression ramps, by flares, steps and incident shock waves, by cylinders and blunt fins, and by glancing shock waves. The effects of Mach number, Reynolds number, and separated flow scale are discussed as are the physical causes of the unsteadiness. The implications that the unsteadiness has for interpreting time-average surface and flowfield data, and for comparisons of such experimental data with computation, is also briefly discussed. Finally, some suggestions for future work are given. It is clear that there are large gaps in the data base and that many aspects of such phenomena are poorly understood. Much work remains to be done.
Hall effect, electrical resistivity and optical transmission data and Co impurities in GaP studied via crystal field theory
Gap filling time series data typically depends on linear interpolation. More recently gap filling advancements include machine learning techniques. However, none leverage advanced learning approach that uses cohort training or a neighborhood informed approach, which is described in this report. The report also describes a physics informed approach using Reduced Order Models (ROM). There are several methods to capture the nature of the detailed system in aggregated models, however there is a trade-off for these methods developed for multiple applications. These methods have specific requirements and applications that includes consideration of dynamics or covering a larger range of operating conditions, etc. The various methods of aggregation are: 1) Thevenin equivalents for downstream networks 2) Equivalent feeder representation to capture downstream network losses accurately 3) Structured reduced order models for dynamics 4) System identification-based ROM (abstract dynamical model) Methods described in items 1 and 2 above are ideal for steady-state models and useful for this application. Of these two methods, based on the data availability, the targeted application, the reduced order model that is proposed to be developed is the equivalent feeder model representation. This includes a structure of the reduced order model whose parameters can be determined by the system load and losses with the meter measurements.