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At least 451 records · Page 25

Acid-Base Equilibrium and Dielectric Environment Regulate Charge in Supramolecular Nanofibers

Peptide amphiphiles are a class of molecules that can self-assemble into a variety of supramolecular structures, including high-aspect-ratio nanofibers. It is challenging to model and predict the charges in these supramolecular nanofibers because the ionization state of the peptides are not fixed but liable to change due to the acid-base equilibrium that is coupled to the structural organization of the peptide amphiphile molecules. Here, we have developed a theoretical model to describe and predict the amount of charge found on self-assembled peptide amphiphiles as a function of pH and ion concentration. In particular, we computed the amount of charge of peptide amphiphiles nanofibers with the sequence C 16 − V 2 A 2 E 2 . In our theoretical formulation, we consider charge regulation of the carboxylic acid groups, which involves the acid-base chemical equilibrium of the glutamic acid residues and the possibility of ion condensation. The charge regulation is coupled with the local dielectric environment by allowing for a varying dielectric constant that also includes a position-dependent electrostatic solvation energy for the charged species. We find that the charges on the glutamic acid residues of the peptide amphiphile nanofiber are much lower than the same functional group in aqueous solution. There is a strong coupling between the charging via the acid-base equilibrium and the local dielectric environment. Our model predicts a much lower degree of deprotonation for a position-dependent relative dielectric constant compared to a constant dielectric background. Furthermore, the shape and size of the electrostatic potential as well as the counterion distribution are quantitatively and qualitatively different. These results indicate that an accurate model of peptide amphiphile self-assembly must take into account charge regulation of acidic groups through acid–base equilibria and ion condensation, as well as coupling to the local dielectric environment.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

On the effect of scalar flux weighing of linearly anisotropic scattering matrices in few-group transport calculations

The majority of the codes available for homogenized group constant generation for deterministic transport calculations apply the approximation of scalar flux weighting during energy group condensation of higher-order anisotropic scattering matrices. In this paper, we discuss the effect of scalar flux weighting of the linearly anisotropic scattering matrices in the frame of S P{sub 3} and S{sub 12} calculations performed for a two-dimensional VVER-440 reactor benchmark. To compare group constants generated for two neutron energy groups, an infinite pin cell was homogenized with Serpent 2 and ERANOS ECCO. Serpent 2 applies scalar flux, while ERANOS ECCO performs current weighting of the linearly anisotropic scattering matrices during energy group condensation. For analyzing the effect of the various weighting options, three simple reactor models were built assuming different core sizes using standard rectangular assemblies with 15*15 fuel pins. Diffusion, SP{sub 3} and S{sub 12} calculations were performed for the 3 models using group constants generated with Serpent 2 and ERANOS ECCO. The effect of scalar flux weighting of linearly anisotropic scattering matrices is shown by comparing the decrease in reactivity due to the decreased reactor size, as well as the assembly power distribution to reference results obtained with Serpent 2 Monte Carlo calculations. Neglecting higher than linearly anisotropic scattering and indirect application of diffusion coefficients in higher-order transport calculations is advised if angular flux-moment spectra weighted higher-order scattering matrices cannot be generated. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Charm physics with overlap fermions on 2+1-flavor domain wall fermion configurations*

Decay constants of pseudoscalar mesons D, D s , η c , and vector mesons D*, D$^{*}_{s}$, J/ψ are determined from the N f = 2 + 1 lattice QCD at a lattice spacing a ~ 0.08 fm. For vector mesons, the decay constants defined by tensor currents are given in the $\overline{MS}$ scheme at 2 GeV. The calculation is performed on domain wall fermion configurations generated by the RBC-UKQCD collaborations and the overlap fermion action is used for the valence quarks. Comparing the current results with our previous results at a coarser lattice spacing a ~ 0.11 fm provides a better understanding of the discretization error. We obtain $f$$^{T}_{D^*_s}$($\overline{MS}$, 2 GeV)/f D$^{*}_{s}$ = 0.909(18) with a better precision than our previous result. Combining our f D$^{*}_{s}$ = 277(11) MeV with the total width of D$^{*}_{s}$ determined in a recent study gives a branching fraction 4.26(52) x 10 –5 for D$^{*}_{s}$ leptonic decay.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

First Principles Simulations of Electrified Interfaces in Electrochemistry

This chapter discusses some of the recent advances made in the first principles modeling of electrochemical catalysts. It also discusses the key development, namely the ability to explicitly treat the effects of surface electrification due to electrochemical processes and applied voltages in a computationally efficient manner. The chapter introduces the thermodynamics and statistical mechanics of electrified metal-solution interfaces. It then discusses the structure of the electrode-electrolyte interface and the effects of applied voltages, followed by an overview of the first-principles model and a motivating example. The chapter also provides a brief summary of classical thermodynamics and describes the basics of thermodynamic detour. It considers the thermodynamics of macroscopic systems and introduces several useful fundamental relations. Here, the chapter also considers a system to exist in a certain macrostate, which is a particular thermodynamic state specified by a set of fixed properties such as constant particle number, constant volume, and constant temperature.

36 MATERIALS SCIENCE↗

Water Catalysis of the Reaction of Methanol with OH Radical in the Atmosphere is Negligible

Abstract Faced with the contradictory results of two recent experimental studies [Jara‐Toro et al., Angew. Chem. Int. Ed . 2017 , 56 , 2166 and Chao et al., Angew. Chem. Int. Ed . 2019 , 58 , 5013] of the possible catalytic effect of water vapor on CH 3 OH + OH reaction, we report calculations that corroborate the conclusion made by Chao et al. and extend the rate constant evaluation down to 200 K. The rate constants of the CH 3 OH + OH reaction catalyzed by a water molecule are computed as functions of temperature and relative humidity using high‐level electronic structure and kinetics calculations. The Wuhan–Minnesota Scaling (WMS) method is used to provide accurate energetics to benchmark a density functional for direct dynamics. Both high‐frequency and low‐frequency anharmonicities are included. Variational and tunneling effects are treated by canonical variational transition state theory with multidimensional small‐curvature tunneling. And, most significantly, we include multistructural effects in the rate constant calculations. Our calculations show that the catalytic effect of water vapor is not observable at 200–400 K.

Wu, Junjun↗

An SECM-Based Spot Analysis for Redoxmer-Electrode Kinetics: Identifying Redox Asymmetries on Model Graphitic Carbon Interfaces

The fundamental process in non-aqueous redox flow battery (NRFB) operation revolves around electron transfer (ET) between a current collector electrode and redox-active organic molecules (redoxmers) in solution. Here, we present an approach utilizing scanning electrochemical microscopy (SECM) to evaluate interfacial ET kinetics between redoxmers and various electrode materials of interest at desired locations. This spot-analysis method relies on the measurement of heterogeneous electron transfer rate constants (k f or k b ) as a function of applied potential (E-E 0 '). As demonstrated by COMSOL simulations, this method enables the quantification of Butler-Volmer kinetic parameters, the standard heterogeneous rate constant, k 0 , and the transfer coefficient, α. Our method enabled the identification of inherent asymmetries in the ET kinetics arising during the reduction of ferrocene-based redoxmers, compared to their oxidation which displayed faster rate constants. Similar behavior was observed on a wide variety of carbon electrodes such as multi-layer graphene, highly ordered pyrolytic graphite, glassy carbon, and chemical vapor deposition-grown graphite films. However, aqueous systems and Pt do not exhibit such kinetic effects. Our analysis suggests that differential adsorption of the redoxmers is insufficient to account for our observations. Displaying a greater versatility than conventional electroanalytical methods, we demonstrate the operation of our spot analysis at concentrations up to 100 mM of redoxmer over graphite films. Looking forward, our method can be used to assess non-idealities in a variety of redoxmer/electrode/solvent systems with quantitative evaluation of kinetics for applications in redox-flow battery research.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Solvothermal Synthesis of [Cr 7 S 8 (en) 8 Cl 2 ]Cl 3 ⋅ 2H 2 O with Magnetically Frustrated [Cr 7 S 8 ] 5+ Double‐Cubes**

Abstract A novel transition metal chalcohalide [Cr 7 S 8 (en) 8 Cl 2 ]Cl 3 ⋅ 2H 2 O, with [Cr 7 S 8 ] 5+ dicubane cationic clusters, has been synthesized by a low temperature solvothermal method, using dimethyl sulfoxide (DMSO) and ethylenediamine ( en ) solvents. Ethylenediamine ligand exhibits bi‐ and monodentate coordination modes; in the latter case ethylenediamine coordinates to Cr atoms of adjacent clusters, giving rise to a 2D polymeric structure. Although magnetic susceptibility shows no magnetic ordering down to 1.8 K, a highly negative Weiss constant, θ =−224(2) K, obtained from Curie‐Weiss fit of inverse susceptibility, suggests strong antiferromagnetic (AFM) interactions between S =3/2 Cr(III) centers. Due to the complexity of the system with (2 S +1) 7 =16384 microstates from seven Cr 3+ centers, a simplified model with only two exchange constants was used for simulations. Density‐functional theory (DFT) calculations yielded the two exchange constants to be J 1 =−21.4 cm −1 and J 2 =−30.2 cm −1 , confirming competing AFM coupling between the shared Cr 3+ center and the peripheral Cr 3+ ions of the dicubane cluster. The best simulation of the experimental data was obtained with J 1 =−20.0 cm −1 and J 2 =−21.0 cm −1 , in agreement with the slightly stronger AFM exchange within the triangles of the peripheral Cr 3+ ions as compared to the AFM exchange between the central and peripheral Cr 3+ ions. This compound is proposed as a synthon towards magnetically frustrated systems assembled by linking dicubane transition metal‐chalcogenide clusters into polymeric networks.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

D 3 -creatine dilution for skeletal muscle mass measurement: historical development and current status

The French chemist Michel Eugène Chevreul discovered creatine in meat two centuries ago. Extensive biochemical and physiological studies of this organic molecule followed with confirmation that creatine is found within the cytoplasm and mitochondria of human skeletal muscles. Two groups of investigators exploited these relationships five decades ago by first estimating the creatine pool size in vivo with 14 C and 15 N labelled isotopes. Skeletal muscle mass (kg) was then calculated by dividing the creatine pool size (g) by muscle creatine concentration (g/kg) measured on a single muscle biopsy or estimated from the literature. This approach for quantifying skeletal muscle mass is generating renewed interest with the recent introduction of a practical stable isotope (creatine-(methyl-d 3 )) dilution method for estimating the creatine pool size across the full human lifespan. The need for a muscle biopsy has been eliminated by assuming a constant value for whole-body skeletal muscle creatine concentration of 4.3 g/kg wet weight. The current single compartment model of estimating creatine pool size and skeletal muscle mass rests on four main assumptions: tracer absorption is complete; tracer is all retained; tracer is distributed solely in skeletal muscle; and skeletal muscle creatine concentration is known and constant. Three of these assumptions are false to varying degrees. Not all tracer is retained with urinary isotope losses ranging from 0% to 9%; an empirical equation requiring further validation is used to correct for spillage. Not all tracer is distributed in skeletal muscle with non-muscle creatine sources ranging from 2% to 10% with a definitive value lacking. Lastly, skeletal muscle creatine concentration is not constant and varies between muscles (e.g. 3.89–4.62 g/kg), with diets (e.g. vegetarian and omnivore), across age groups (e.g. middle-age, ~4.5 g/kg; old-age, 4.0 g/kg), activity levels (e.g. athletes, ~5 g/kg) and in disease states (e.g. muscular dystrophies, <3 g/kg). Some of the variability in skeletal muscle creatine concentrations can be attributed to heterogeneity in the proportions of wet skeletal muscle as myofibres, connective tissues, and fat. These observations raise serious concerns regarding the accuracy of the deuterated-creatine dilution method for estimating total body skeletal muscle mass as now defined by cadaver analyses of whole wet tissues and in vivo approaches such as magnetic resonance imaging. A new framework is needed in thinking about how this potentially valuable method for measuring the creatine pool size in vivo can be used in the future to study skeletal muscle biology in health and disease.

body composition↗

Adaptive laboratory evolution for increased temperature tolerance of the diatom Nitzschia inconspicua

Abstract Outdoor microalgal cultivation for the production of valuable biofuels and bioproducts typically requires high insolation and strains with high thermal (>37°C) tolerance. While some strains are naturally thermotolerant, other strains of interest require improved performance at elevated temperatures to enhance industrial viability. In this study, adaptive laboratory evolution (ALE) was performed for over 300 days using consecutive 0.5°C temperature increases in a constant temperature incubator to attain greater thermal tolerance in the industrially relevant diatom Nitzschia inconspicua str. Hildebrandi. The adapted strain was able to grow at a constant temperature of 37.5°C; whereas this constant temperature was lethal to the parental control, which had an upper‐temperature boundary of 35.5°C before adaptive evolution. Several high‐temperature clonal isolates were obtained from the evolved population following ALE, and increased temperature tolerance was observed in the clonal, parent, and non‐clonal adapted cultures. This ALE method demonstrates the development of enhanced industrial algal strains without the production of genetically modified organisms (GMOs).

59 BASIC BIOLOGICAL SCIENCES↗

Ecosystem-Level Biomimicry for the Built Environment: Adopting Systems Ecology Principles for the Control of Heterogeneous Energy Systems

This paper presents, to our knowledge, the first system-level engineering study to bio-mimic the cybernetics and flow dynamics of energy resources in natural ecosystems for the control of heterogeneous energy infrastructures in the built environment. To this end, we introduce a novel Biomimetic Pulsing State (BPS) control that functionally mimics mature ecosystems. A preliminary Modelica-based case study features a single-family residential building with electrical and HVAC subsystems. The BPS control objective is to minimize the energy exchange between the building and the grid for the purposes of future self-supporting buildings and grid stability. The building contains PV, a wind turbine, a battery storage system, and a fan coil/heat pump HVAC system served by an ambient district energy network. Evaluating the control performance (BPS vs. constant setpoint) over several renewable energy scenarios (net importer, net zero, net exporter), simulation results show how the building's HVAC system can dynamically adjust its electrical load and temperatures to the electrical system's net energy status in real-time with BPS control. As a net importer, the heat pump consumed 29% less energy and its peak power reduced by 15% with BPS control compared to the constant setpoint case, with the zone air temperature 1 degree C lower on average. As a net exporter, the heat pump effectively consumed the same energy, but the peak power increased by 34% with BPS control, while the zone air temperature was 1 degree C higher when renewable energy was abundant, preheating the home. BPS and constant setpoint control produced comparable results under a net zero scenario. While further evaluation is essential, BPS control may help communities meet their sustainability and resiliency targets as they transition towards fully distributed and renewable energy grids.

biomimicry↗

Dark matter detection, Standard Model parameters and Intermediate Scale Supersymmetry

The vanishing of the Higgs quartic coupling at a high energy scale may be explained by Intermediate Scale Supersymmetry, where supersymmetry breaks at (10 9 -10 12 ) GeV. The possible range of supersymmetry breaking scales can be narrowed down by precise measurements of the top quark mass and the strong coupling constant. On the other hand, nuclear recoil experiments can probe Higgsino or sneutrino dark matter up to a mass of 1012 GeV. We derive the correlation between the dark matter mass and precision measurements of standard model parameters, including supersymmetric threshold corrections. The dark matter mass is bounded from above as a function of the top quark mass and the strong coupling constant. The top quark mass and the strong coupling constant are bounded from above and below respectively for a given dark matter mass. We also discuss how the observed dark matter abundance can be explained by freeze-out or freeze-in during a matter-dominated era after inflation, with the inflaton condensate being dissipated by thermal effects.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Moduli stabilisation and the statistics of axion physics in the landscape

String theory realisations of the QCD axion are often said to belong to the anthropic window where the decay constant is around the GUT scale and the initial misalignment angle has to be tuned close to zero. In this paper we revisit this statement by studying the statistics of axion physics in the string landscape. We take moduli stabilisation properly into account since the stabilisation of the saxions is crucial to determine the physical properties of the corresponding axionic partners. We focus on the model-independent case of closed string axions in type IIB flux compactifications and find that their decay constants and mass spectrum feature a logarithmic, instead of a power-law, distribution. In the regime where the effective field theory is under control, most of these closed string axions are ultra-light axion-like particles, while axions associated to blow-up modes can naturally play the role of the QCD axion. Hence, the number of type IIB flux vacua with a closed string QCD axion with an intermediate scale decay constant and a natural value of the misalignment angle is only logarithmically suppressed. In a recent paper we found that this correlates also with a logarithmic distribution of the supersymmetry breaking scale, providing the intriguing indication that most, if not all, of the phenomenologically interesting quantities in the string landscape might feature a logarithmic distribution.

79 ASTRONOMY AND ASTROPHYSICS↗

Radiative Corrections to Neutron Beta Decay and (Anti)Neutrino-Nucleon Scattering from Low-Energy Effective Field Theory

Herein we study radiative corrections to neutron beta decay and low-energy (anti)neutrino-nucleon scattering within a top-down effective field theory approach. As it was recently shown, a few electromagnetic and electroweak low-energy coupling constants in heavy-baryon chiral perturbation theory are yet to be determined. Performing matching to the four-fermion effective field theory, we relate these low-energy constants to correlation functions of vector and axial-vector currents. Such relations allow us to explicitly clarify scheme dependence for radiative corrections to neutron decay and low-energy charged-current (anti)neutrino scattering, provide a robust prediction of leading in the electromagnetic coupling constant contributions, and achieve a clear separation between short-distance and long-distance contributions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Stochastic Model for High Temperature Oxidation of Cr–Ni Austenitic Steels Assisted by Spallation

Abstract Cr–Ni austenitic steels offer significant high temperature corrosion protection by forming a surface oxide layer. However, above critical service conditions (temperature, atmosphere, thermal cycling), oxidized surface can experience intensive degradation because of scale spallation, which could be detrimental to the in-service life. To predict the effect of scale spallation on oxidation kinetics, a simulation was implemented using a stochastic model. The model considers topological parameters and intensity of spallation which can occur, while delivering a true oxidation constant. The experimental procedure identified the amount of formed spalled scale and topology of spallation based on the use of element mapping of the surface. This information was used to determine a true kinetic constant for a corresponding spallation intensity in oxidized Cr–Ni austenitic steel. To illustrate the capability of the stochastic model, a parametric analysis was performed. The model verified how the spallation parameters could change the oxidation processes from parabolic growth of an adhered oxide layer without spallation to a mixed linear-parabolic, or with a constant thickness of residual scale at high spallation intensity. The spallation model will be used in a separate article to characterize high temperature surface degradation of several Cr–Ni austenitic steels during harsh oxidation environments.

36 MATERIALS SCIENCE↗

Kinetic model describing self-limiting CO 2 diffusion in supported amine adsorbents

A reaction–diffusion shrinking core model describing the decay in diffusivity of supported amine sorbents upon CO 2 sorption under both simulated direct air capture and point source capture conditions is described. The decay in CO 2 diffusivity is associated with crosslinking in the aminopolymer samples and general pore blockage in the amino-silane derived samples, which occurs as CO 2 is adsorbed. The model is used to extract four kinetic parameters that govern the CO 2 uptake kinetics and working capacity: an apparent reaction rate constant, an initial effective diffusivity, and two dimensionless decay parameters. Ideally, an initially reaction limited system would allow for direct determination of the intrinsic reaction rate constant; however, sorption experiments suggest mass transfer resistances related to gas mixing, external boundary layers and intraparticle diffusion are present. Reaction rate constants are determined and agree well with theoretical values predicted with the Eyring equation parameterized using density functional theory energies from literature sources. The kinetic performance is expressed as the average effective diffusivity as a function of average conversion, which can be correlated to the dispersion of sorption sites on the support and the morphology of the active sorbent phase. Four supports are impregnated or grafted with amines, SBA-15, single-walled zeolite nanotubes (ZNT), Syloid SiO 2 , and γ-Al 2 O 3 . Due to its pore structure, γ-Al 2 O 3 supported amines can be modeled at the μm scale or at the nm scale, where the shell balance is on the μm-sized macroporous particle aggregate or on the nm-sized amine film on the surface of the Al 2 O 3 nanoparticles, which comprise the spherical particle aggregates. Faster diffusion rates are maintained under 400 ppm rather than 10% CO 2 due to a slower reaction rate giving a slower decay in diffusivity. In conclusion, this work provides a first principles kinetic analysis of CO 2 sorption where previous models are semi-empirical and use arbitrary kinetic parameters.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

High-throughput measurements of CO 2 permeance and solubility in ionic liquid reveal a synergistic role of ionic interactions and void fractions

The factors that govern CO 2 solubility in ionic liquids (ILs) are of great interest for the development of new materials for CO 2 capture and utilization. The cationic functional group (i.e., imidazolium, pyrrolidinium, pyridinium, etc.), alkyl chain length of cation, degree of fluorination of anion, anion size, and the void fraction in IL are known to influence CO 2 solubility. However, a comprehensive explanation of how these factors collectively affect CO 2 solubility has not been developed yet. This knowledge gap is largely attributed to the lack of CO 2 solubility data for IL structures other than imidazolium based ILs. We report here an automated high-throughput (HT) setup for the measurement of CO 2 solubility in room-temperature ILs (RTILs) combining six different anions and nine different cations for a total of 19 different specific ranges of RTILs. The HT setup first dispenses up to 200 µL of RTILs in a 96-well microtiter plate and then utilizes a robotic arm to measure cyclic voltammogram (CV) in each well using maneuverable Ag electrodes. The Cottrell analysis of the CO 2 reduction CV peak provides a direct measurement of CO 2 permeance in RTILs, which yields Henry’s constant from the estimated diffusion coefficient of CO 2 . Henry’s constants thus obtained are in very good agreement with those reported earlier. The measured CO 2 permeance and Henry’s constant of all RTILs seem to follow a first-order dependence on void fraction and a second-order dependence on electrostatic interaction between anion and cation of IL, with some synergistic dependence on the product of a void fraction and electrostatic interaction, making them two important descriptors for the design of novel ILs.

CO2 Solubility↗