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At least 433 records · Page 24

SFA-VirOmics

PNNL's Soil Microbiome Science Focus Area (SFA) is focused on understanding the basic biology underpinning how interactions among various soil microbial community members, across trophic levels, lead to the emergence of community functions. Moisture, in particular, drives microbial interactions and influences everything from cell function to substrate fate within soils. The group predicts this results in repeatable, predictable phenotypes. The sum of these phenotypes comprises the “soil metaphenome”. Understanding how the soil metaphenome shifts in response to moisture will provide a basis for modeling and predicting these shifts in reaction network responses. Visit the PNNL Soil Microbiome Science Focus Area Program homepage for more information. PNNL’s Soil Microbiome SFA Virome Dataset Annotation page is an extension to the PNNL Soil Microbiome SFA repository on DataHub allows for exploring and downloading integrated experimental omics dataset annotations, associated experimental metadata, pre- and post-processed viral data files, and other associated materials directly related to experimental viral project data.

59 BASIC BIOLOGICAL SCIENCES↗

A Probabilistic Autoencoder for Type Ia Supernova Spectral Time Series

We construct a physically parameterized probabilistic autoencoder (PAE) to learn the intrinsic diversity of Type Ia supernovae (SNe Ia) from a sparse set of spectral time series. The PAE is a two-stage generative model, composed of an autoencoder that is interpreted probabilistically after training using a normalizing flow. We demonstrate that the PAE learns a low-dimensional latent space that captures the nonlinear range of features that exists within the population and can accurately model the spectral evolution of SNe Ia across the full range of wavelength and observation times directly from the data. By introducing a correlation penalty term and multistage training setup alongside our physically parameterized network, we show that intrinsic and extrinsic modes of variability can be separated during training, removing the need for the additional models to perform magnitude standardization. We then use our PAE in a number of downstream tasks on SNe Ia for increasingly precise cosmological analyses, including the automatic detection of SN outliers, the generation of samples consistent with the data distribution, and solving the inverse problem in the presence of noisy and incomplete data to constrain cosmological distance measurements. We find that the optimal number of intrinsic model parameters appears to be three, in line with previous studies, and show that we can standardize our test sample of SNe Ia with an rms of 0.091 ± 0.010 mag, which corresponds to 0.074 ± 0.010 mag if peculiar velocity contributions are removed.

79 ASTRONOMY AND ASTROPHYSICS↗

GRIDCERF - Geospatial Raster Input Data for Capacity Expansion Regional Feasibility

The Geospatial Raster Input Data for Capacity Expansion Regional Feasibility (GRIDCERF) data package is a high-resolution product to evaluate siting suitability for renewable and non-renewable power plants in the conterminous United States. GRIDCERF offers hundreds of individual suitability layers for use with both renewable and non-renewable power plant technology configurations in a harmonized format that can be easily ingested by geospatially-enabled modeling software. It also provides pre-compiled technology-specific suitability layers and allows for user customization to robustly address science objectives when evaluating varying future conditions. GRIDCERF data can be directly used with the CERF (Capacity Expansion Regional Feasibility) model to site power plants at a 1km resolution. GRIDCERF includes composite technology siting suitability raster layers for the following utility scale technology configurations. Note that, in addition to technology sub-types shown below, various cooling types are also included (recirculating, pond, once-through, recirculating-seawater, dry-hybrid, or dry) for various technologies. Biomass Conventional (with or without CCS) IGCC (with or without CCS) Coal Conventional (with or without CCS) IGCC (with or without CCS) Natural Gas Combined-cycle (CC) (with or without CCS) Turbine Geothermal Enhanced Geothermal Systems (EGS) - Class 1 through Class 5 resource potential Nuclear Gen 2 Light Water Reactor (LWR) Gen 3 Small Modular Reactor (SMR) Gen 3 AP1000 Refined Liquids Combined-cycle (CC) (with or without CCS) Turbine Solar Photovoltaic (PV) - for capacity factors in the range of 6-18% Utility-scale Concentrating Solar Power (CSP) - for capacity factors in the range of 24-46% Tower Wind (Onshore) - for capacity factors in the range of 5-50% 80m hub height 100m hub height 120m hub height 140m hub height Wind (Offshore) - for capacity factors in the range of 25-60% 100m hub height 140m hub height 160m hub height

capacity expansion↗

GRIDCERF - Geospatial Raster Input Data for Capacity Expansion Regional Feasibility

The Geospatial Raster Input Data for Capacity Expansion Regional Feasibility (GRIDCERF) data package is a high-resolution product to evaluate siting suitability for renewable and non-renewable power plants in the conterminous United States. GRIDCERF offers hundreds of individual suitability layers for use with both renewable and non-renewable power plant technology configurations in a harmonized format that can be easily ingested by geospatially-enabled modeling software. It also provides pre-compiled technology-specific suitability layers and allows for user customization to robustly address science objectives when evaluating varying future conditions. GRIDCERF data can be directly used with the CERF (Capacity Expansion Regional Feasibility) model to site power plants at a 1km resolution. GRIDCERF includes composite technology siting suitability raster layers for the following utility scale technology configurations. Note that, in addition to technology sub-types shown below, various cooling types are also included (recirculating, pond, once-through, recirculating-seawater, dry-hybrid, or dry) for various technologies. Biomass Conventional (with or without CCS) IGCC (with or without CCS) Coal Conventional (with or without CCS) IGCC (with or without CCS) Natural Gas Combined-cycle (CC) (with or without CCS) Turbine Geothermal Enhanced Geothermal Systems (EGS) - Class 1 through Class 5 resource potential Nuclear Gen 2 Light Water Reactor (LWR) Gen 3 Small Modular Reactor (SMR) Gen 3 AP1000 Refined Liquids Combined-cycle (CC) (with or without CCS) Turbine Solar Photovoltaic (PV) - for capacity factors in the range of 6-18% Utility-scale Concentrating Solar Power (CSP) - for capacity factors in the range of 24-46% Tower Wind (Onshore) - for capacity factors in the range of 5-50% 80m hub height 100m hub height 120m hub height 140m hub height Wind (Offshore) - for capacity factors in the range of 25-60% 100m hub height 140m hub height 160m hub height

capacity expansion↗

Systems and methods for increasing efficiency of ultrasound waveform tomography

Ultrasound tomography imaging methods for imaging a tissue medium with one or more ultrasound transducer arrays comprising a plurality of transducers, wherein said transducers comprise source transducers, receiving transducers. The methods include assigning a phase value or time delay to source transducers, exciting the transducers and calculating a search direction based on data relating to the excited transducers.

Huang, Lianjie↗

Integrated solid-state rapid thermo-cycling system

Techniques, systems, and devices are disclosed for implementing a portable lab system for PCR testing. The portable lab system comprises a thermal cycling device including a first well and a second well to receive samples to be thermally cycled, a thermoelectric cooling (TEC) element coupled to the first well and the second well, and a controller to control operation of the TEC element. The portable lab system further includes an electronic interface including a power interface to supply power to the TEC element and the controller of the thermal cycling device to allow the TEC element to transfer energy from the first well to the second well when current flows through the TEC element in a first direction, and from the second well to the first well when current flows through the TEC element in a second direction, and a data interface to collect data from the controller.

59 BASIC BIOLOGICAL SCIENCES↗

On the Neutrino and Gamma-Ray Emission from NGC 1068

IceCube has recently reported the detection of $\sim 1-10 \,{\rm TeV}$ neutrinos from the nearby active galaxy, NGC 1068. The lack of TeV-scale emission from this source suggests that these neutrinos are generated in the dense corona that surrounds NGC 1068's supermassive black hole. In this paper, we present a physical model for this source, including the processes of pair production, pion production, synchrotron, and inverse Compton scattering. We have also performed a new analysis of Fermi-LAT data from the direction of NGC 1068, finding that the gamma-ray emission from this source is very soft but bright at energies below $\sim 1 \, {\rm GeV}$. Our model can predict a gamma-ray spectrum that is consistent with Fermi-LAT observations, but only if the magnetic field within the corona of this active galactic nucleus (AGN) is quite high, namely $B\gtrsim 6 \, {\rm kG}$. To explain the observed neutrino emission, this source must accelerate protons with a total power that is comparable to its intrinsic X-ray luminosity. In this context, we consider two additional nearby active galaxies, NGC 4151 and NGC 3079, which have been identified as promising targets for IceCube.

79 ASTRONOMY AND ASTROPHYSICS↗

Predicting Initial Trans-Membrane Pressure for Optimized Operations in UF Unit Using Random Forest

With the growing scarcity of freshwater, innovative process design mechanisms like Reverse Osmosis (RO) are increasingly gaining attention among water treatment utilities to address the rising demand. Ensuring reliable water production necessitates efficient resource utilization, minimizing downtime in (ultra-filtration) UF systems. Recent advancements in machine learning (ML) have enabled the development of accurate data-driven models for Model Predictive Control (MPC), often requiring minimal prior knowledge of underlying physical processes. In this study, we present predictive regression models based on Random Forest (RF) and Auto-Regressive (AR) approaches to forecast the initial Trans-Membrane Pressure (TMP) for each filtration cycle in data generated by Direct Potable Reuse (DPR) systems. The proposed RF-based model demonstrates superior performance compared to baseline methods, including historical mean, Last Observation Carried Forward (LOCF), and naïve AR models, across various forecasting horizons in terms of root mean square error (RMSE) metric. To evaluate how different classes of process variables contribute to TMP dynamics over time, we examine the feature importance of independent covariates across multiple forecast horizons. This analysis provides insight into the temporal relevance of operational and sensor-derived features, guiding control and monitoring strategies. Additionally, the impact of hyperparameter tuning on TMP prediction performance is studied for both direct and recursive RF modelling approaches across increasing forecast horizons. Accurate prediction of initial TMP is critical for optimizing RO operations, as it enables the development of robust modelling frameworks by accurately estimating membrane fouling trends, thereby enhancing process efficiency and long-term reliability. The demonstrated efficacy of the RF-based approach highlights its potential as a tool for real-time decision-making in water treatment systems, paving the way for advanced process optimization and sustainable water resource management.

Mukherjee, Subrata [ORNL] (ORCID:0000000309930338)↗

Predicting Initial Trans-Membrane Pressure for Optimized Operations in UF Unit Using Random Forest

With the growing scarcity of freshwater, innovative process design mechanisms like Ultra-filtration(UF) units are increasingly gaining attention among water treatment utilities to address the rising demand. Ensuring reliable water production necessitates efficient resource utilization, minimizing downtime in UF systems. Recent advancements in machine learning (ML) have enabled the development of accurate data-driven models for Model Predictive Control (MPC), often requiring minimal prior knowledge of underlying physical processes. In this study, we present predictive regression models based on Random Forest (RF) and Auto-Regressive (AR) approaches to forecast the initial Trans-Membrane Pressure (TMP) for each filtration cycle in data generated by Direct Potable Reuse (DPR) systems. The proposed RF-based model demonstrates superior performance compared to baseline methods, including historical mean, Last Observation Carried Forward (LOCF), and naïve AR models, across various forecasting horizons in terms of root mean square (RMSE) metric. Accurate prediction of initial TMP is critical for optimizing CCRO operations, as it enables the development of robust modelling frameworks that enhance process efficiency and reliability. The demonstrated efficacy of the RF-based approach highlights its potential as a tool for real-time decision-making in water treatment systems, paving the way for advanced process optimization and sustainable water resource management.

Mukherjee, Subrata [ORNL] (ORCID:0000000309930338)↗

Diagnosis of the imploding shell asymmetry in polar-direct-drive deuterium–tritium cryogenic target implosions on OMEGA

We discuss the analyses of gated, x-ray imaging data from polar-direct-drive experiments with cryogenically layered deuterium–tritium targets on the OMEGA laser. The in-flight shell asymmetries were diagnosed at various times during the implosion, which was caused by the beam pointing geometry and preimposed variations in the energy partition between the different groups of laser beams. The shape of the ablation surface during the acceleration phase of the implosion was measured along two different lines of sight, and a Legendre mode (ℓ-mode) decomposition was applied for modes of up to ten to investigate shell asymmetries. A clear causal relationship between the imposed beam imbalance and the shape of the in-flight shell asymmetries was observed. The imploded shell with a balanced energy ratio shows smaller values of the amplitudes of ℓ-mode 2 compared to that from implosions with an imbalanced ring energy ratio. The amplitudes of ℓ-modes 4 and 6 are the same within the measurement uncertainty with respect to the change in beam energy ratio.

47 OTHER INSTRUMENTATION↗

Real-time mixed reality display of dual particle radiation detector data

Radiation source localization and characterization are challenging tasks that currently require complex analyses for interpretation. Mixed reality (MR) technologies are at the verge of wide scale adoption and can assist in the visualization of complex data. Herein, we demonstrate real-time visualization of gamma ray and neutron radiation detector data in MR using the Microsoft HoloLens 2 smart glasses, significantly reducing user interpretation burden. Radiation imaging systems typically use double-scatter events of gamma rays or fast neutrons to reconstruct the incidence directional information, thus enabling source localization. The calculated images and estimated ’hot spots’ are then often displayed in 2D angular space projections on screens. By combining a state-of-the-art dual particle imaging system with HoloLens 2, we propose to display the data directly to the user via the head-mounted MR smart glasses, presenting the directional information as an overlay to the user’s 3D visual experience. We describe an open source implementation using efficient data transfer, image calculation, and 3D engine. We thereby demonstrate for the first time a real-time user experience to display fast neutron or gamma ray images from various radioactive sources set around the detector. We also introduce an alternative source search mode for situations of low event rates using a neural network and simulation based training data to provide a fast estimation of the source’s angular direction. Using MR for radiation detection provides a more intuitive perception of radioactivity and can be applied in routine radiation monitoring, education & training, emergency scenarios, or inspections.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A priori examination of reduced chemistry models derived from canonical stirred reactors using three-dimensional direct numerical simulation datasets

Data-driven approaches to construct reduced chemical kinetic models, that rely heavily on thermo-chemical datasets with full chemical kinetics, have been gaining popularity. Datasets from direct numerical simulations (DNS) under three-dimensional (3-D) realistic turbulent flow conditions are desirable but limited to carefully designed parametric conditions due to the computational cost. Constructing datasets from a large ensemble of zero-dimensional stirred reactors like perfectly stirred reactor (PSR) and partially stirred reactor (PaSR) is a computationally efficient solution to consider the turbulence-chemistry interactions and cover a broad range of parametric conditions. In this paper, we derive reduced chemistry models from solutions of a large number of PSR and PaSR reactors using autoencoder (AE) neural networks and principal component analysis (PCA), and conduct a priori examination of the reduced models in three temporally evolving 3-D DNS jet flames featuring local extinction and re-ignition. The results show that the reduced models derived from PaSR datasets, i.e., AE-PaSR and PCA-PaSR, generally show significant improvement over the ones derived from PSR datasets. Among all the reduced models, AE-PaSR shows the best agreement with DNS results on the reconstruction accuracy and the representation of temporally evolving local extinction and re-ignition events.

Zhang, Pei↗

High-Fidelity Simulation of the Light-to-Dense Stratification Transient in the HiRJET Facility

Density stratification in a large enclosure is a crucial phenomenon to heat transfer and sustainable passive heat removal of a sodium fast reactor during reactivity transients. However, engineering turbulence models were identified to have unsatisfactory performance in predicting propagation of a stratified front. Yet, the scarcity of high-resolution data for stratification hampers the development of models. To explor e applications of leveraging direct numerical simulation (DNS) data to support turbulence model development, this work conducted DNS using NekRS to study a long stratification transient in the High-Resolution Jet (HiRJET) experimental facility. Here, this work considers an experiment run where light fluid is injected into a tank containing a denser fluid with a relative density difference of 1.5%. Formation of the stratified layer is identified as impingement of the buoyant jet promoting mixing of the two fluids. Based on the transient statistics, transport of the concentration can be characterized by regions with dominating effects of turbulent mixing, buoyant dissipation, and molecular diffusion, respectively, as moving away from the elevation of jet impingement. Concentration near the stratified front also exhibits oscillation at Brunt-Väisälä frequency. Preliminary validation of the simulation showed encouraging agreement of the concentration distribution with the reference experiment.

buoyant mixing↗

Enhancing Network Anomaly Detection Using Graph Neural Networks

In the world of Internet of Things (IoT) networks, where devices are constantly communicating, keeping them secure from cyber threats is critical. This paper introduces a novel approach to detecting unusual and potentially harmful activities in these networks using graph neural networks (GNNs). We combine two specific types of GNNs-GraphSAGE and graph attention networks (GAT)-to create a model that understands and represents the behaviors and interactions in a network. GraphSAGE creates an embedding of network activities by examining local data interactions, while GAT directs the model's focus to the most critical interactions. By integrating these two methods in a single model that considers different types of interactions (both host and flow nodes), we aim to create a system that accurately represents the current state of a network and can also spot anomalies effectively while reducing false positives and negatives. Our innovative approach has demonstrated promising results, achieving an accuracy of 98% on the UNSW-NB15 dataset, significantly outperforming standalone GraphSAGE and GAT models. This underscores its potential as a robust framework for securing IoT networks against cyber threats and anomalies.

Marfo, William↗

Stochastic properties of ultralight scalar field gradients

Ultralight axion-like particles are well-motivated dark matter candidates that are the target of numerous direct detection efforts. In the vicinity of the Solar System, such particles can be treated as oscillating scalar fields. The velocity dispersion of the Milky Way determines a coherence time of about 10 6 oscillations, beyond which the amplitude of the axion field fluctuates stochastically. Any analysis of data from an axion direct detection experiment must carefully account for this stochastic behavior to properly interpret the results. This is especially true for experiments sensitive to the gradient of the axion field that are unable to collect data for many coherence times. Indeed, the direction, in addition to the amplitude, of the axion field gradient fluctuates stochastically. We present the first complete stochastic treatment for the gradient of the axion field, including multiple computationally efficient methods for performing likelihood-based data analysis, which can be applied to any axion signal, regardless of coherence time. Additionally, we demonstrate that ignoring the stochastic behavior of the gradient of the axion field can potentially result in failure to discover a true axion signal

79 ASTRONOMY AND ASTROPHYSICS↗

The Need for a System Science Approach to Global Magnetospheric Models

This perspective advocates for the need of a combined system science approach to global magnetospheric models and to spacecraft magnetospheric data to answer the question “Do simulations behave in the same manner as the magnetosphere does?” (instead of the standard validation question “How well do simulations reproduce spacecraft data?”). This approach will 1) validate global magnetospheric models statistically, without the need for a direct comparison against spacecraft data, 2) expose the deficiencies of the models, and 3) provide physics support to the system analysis performed on the magnetospheric system.

79 ASTRONOMY AND ASTROPHYSICS↗

Deriving spatially explicit direct and indirect interaction networks from animal movement data

Abstract Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous‐time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale before estimating interactions, thus allowing inference of interactions occurring between observed GPS locations. Our framework then infers indirect interactions—individuals occurring at the same location, but at different times—while allowing the identification of indirect interactions to vary with ecological context based on CTMM outputs. We assessed the performance of our new method using simulations and illustrated its implementation by deriving disease‐relevant interaction networks for two behaviorally differentiated species, wild pigs ( Sus scrofa ) that can host African Swine Fever and mule deer ( Odocoileus hemionus ) that can host chronic wasting disease. Simulations showed that interactions derived from observed GPS data can be substantially underestimated when temporal resolution of movement data exceeds 30‐min intervals. Empirical application suggested that underestimation occurred in both interaction rates and their spatial distributions. CTMM‐Interaction method, which can introduce uncertainties, recovered majority of true interactions. Our method leverages advances in movement ecology to quantify fine‐scale spatiotemporal interactions between individuals from lower temporal resolution GPS data. It can be leveraged to infer dynamic social networks, transmission potential in disease systems, consumer–resource interactions, information sharing, and beyond. The method also sets the stage for future predictive models linking observed spatiotemporal interaction patterns to environmental drivers.

59 BASIC BIOLOGICAL SCIENCES↗

Paired autoencoders for likelihood-free estimation in inverse problems

Abstract We consider the solution of nonlinear inverse problems where the forward problem is a discretization of a partial differential equation. Such problems are notoriously difficult to solve in practice and require minimizing a combination of a data-fit term and a regularization term. The main computational bottleneck of typical algorithms is the direct estimation of the data misfit. Therefore, likelihood-free approaches have become appealing alternatives. Nonetheless, difficulties in generalization and limitations in accuracy have hindered their broader utility and applicability. In this work, we use a paired autoencoder framework as a likelihood-free estimator (LFE) for inverse problems. We show that the use of such an architecture allows us to construct a solution efficiently and to overcome some known open problems when using LFEs. In particular, our framework can assess the quality of the solution and improve on it if needed. We demonstrate the viability of our approach using examples from full waveform inversion and inverse electromagnetic imaging.

Chung, Matthias (ORCID:0000000178224539)↗