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At least 433 records · Page 24

Quantum Monte Carlo Endstation for Petascale Computing

The major achievements enabled by QMC Endstation grant include * Performance improvement on clusters of x86 multi-core systems, especially on Cray XT systems * New and improved methods for the wavefunction optimizations * New forms of trial wavefunctions * Implementation of the full application on NVIDIA GPUs using CUDA The scaling studies of QMCPACK on large-scale systems show excellent parallel efficiency up to 216K cores on Jaguarpf (Cray XT5). The GPU implementation shows speedups of 10-15x over the CPU implementation on older generation of x86. We have implemented hybrid OpenMP/MPI scheme in QMC to take advantage of multi-core shared memory processors of petascale systems. Our hybrid scheme has several advantages over the standard MPI-only scheme. * Memory optimized: large read-only data to store one-body orbitals and other shared properties to represent the trial wave function and many-body Hamiltonian can be shared among threads, which reduces the memory footprint of a large-scale problem. * Cache optimized: the data associated with an active Walker are in cache during the compute-intensive drift-diffusion process and the operations on an Walker are optimized for cache reuse. Thread-local objects are used to ensure the data affinity to a thread. * Load balanced: Walkers in an ensemble are evenly distributed among threads and MPI tasks. The two-level parallelism reduces the population imbalance among MPI tasks and reduces the number of point-to-point communications of large messages (serialized objects) for the Walker exchange. * Communication optimized: the communication overhead, especially for the collective operations necessary to determine ET and measure the properties of an ensemble, is significantly lowered by using less MPI tasks. The multiple forms of parallelism afforded by QMC algorithms make them ideal candidates for acceleration in the many-core paradigm. We presented the results of our effort to port the QMCPACK simulation code to the NVIDIA CUDA GPU platform. We restructured the CPU algorithms to express additional parallelism, minimize GPU-CPU communication, and efficiently utilize the GPU memory hierarchy. Using mixed precision on GT200 GPUs and MPI for intercommunication and load balancing, we observe typical full-application speedups of approximately 10x to 15x relative to quad-core Xeon CPUs alone, while reproducing the double-precision CPU results within statistical error. We developed an all-electron quantum Monte Carlo (QMC) method for solids that does not rely on pseudopotentials, and used it to construct a primary ultra-high-pressure calibration based on the equation of state of cubic boron nitride. We computed the static contribution to the free energy with the QMC method and obtained the phonon contribution from density functional theory, yielding a high-accuracy calibration up to 900 GPa usable directly in experiment. We computed the anharmonic Raman frequency shift with QMC simulations as a function of pressure and temperature, allowing optical pressure calibration. In contrast to present experimental approaches, small systematic errors in the theoretical EOS do not increase with pressure, and no extrapolation is needed. This all-electron method is applicable to first-row solids, providing a new reference for ab initio calculations of solids and benchmarks for pseudopotential accuracy. We compared experimental and theoretical results on the momentum distribution and the quasiparticle renormalization factor in sodium. From an x-ray Compton-profile measurement of the valence-electron momentum density, we derived its discontinuity at the Fermi wavevector finding an accurate measure of the renormalization factor that we compared with quantum-Monte-Carlo and G0W0 calculations performed both on crystalline sodium and on the homogeneous electron gas. Our calculated results are in good agreement with the experiment. We have been studying the heat of formation for various Kubas complexes of molecular hydrogen on Ti(1,2)ethylene-nH2 using Diffusion Monte Carlo. This work has been started and is ongoing. We are studying systems involving 1 and 2 Ti bonding sites with up to 10 hydrogen molecules in numerous configurations. This work will establish a benchmark that will test the accuracy of density functional calculations and establish the feasibility of our methods for similar systems.

97 MATHEMATICS AND COMPUTING↗

Bayesian and LASSO Regressions for Comparative Permeability Modeling of Sandstone Reservoirs

In this research, Bayesian model averaging (BMA) and least absolute shrinkage and selection operator regression (LASSO) algorithms were adopted for the core permeability modeling as a function of well log and core measurements. More specifically, the core permeability (dependent factor) was modeled given the well log and core data (independent variables) and then predicted in non-cored intervals of a well in a sandstone formation. The BMA is a stochastic linear modeling and a Bayesian parameter selection. Among 50 linear models generated as a function of the independent variables and depicted in Occam’s window, the best model of the highest posterior probability is determined. The best model has the optimal subset parameters that most influences the response factor. The core permeability modeling was again conducted using the LASSO algorithm, which adopts a completely different way of modeling and subset selection by using the penalized least-squared equation. Both BMA and LASSO resulted in a very accurate prediction of the core permeability by achieving perfect measured and calculated permeability matching. Matches for the two algorithms were quantified by computing the adjusted R-squared and root-mean-squared prediction error. In addition, results of the BMA and LASSO were compared to the conventional multiple linear regression (LM). The LASSO algorithm led to an accurate matching similar to LM, but slightly better than BMA. Therefore, both BMA and LASSO represent integrated procedures for accurate permeability estimation similar to conventional regression analysis.

58 GEOSCIENCES↗

Genetic algorithm-based optimisation of the few-group structure for lead fast reactors analysis

The optimal choice of the few-group structure for full-core transient analyses is still an open issue in reactor physics, especially for fast system like the lead fast reactor. One possible approach to select the group boundaries is represented by heuristic search algorithms, such as evolutionary ones. In this paper, a genetic algorithm coupled with the SIMMER code is employed to determine optimized six-group boundaries for the analysis of the ALFRED reactor. The Serpent Monte Carlo code is adopted to produce both the fine-group cross section library and the fine-group flux, used as a figure of merit to drive the genetic optimisation. The results show that the algorithm is indeed able to find satisfactory solutions that comply with the set objectives and can be reasonably interpreted in light of the underlying physics of the considered core. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Discovery of Energy Storage Molecular Materials Using Quantum Chemistry-Guided Multiobjective Bayesian Optimization

Redox flow batteries (RFBs) are a promising technology for stationary energy storage applications due to their flexible design, scalability, and low cost. In RFBs, energy is carried in flowable redoxactive materials (redoxmers) which are stored externally and pumped to the cell during operation. Further improvements in the energy density of RFBs necessitates redoxmer designs with wider redox potential windows and higher solubility. Additionally, designing redoxmers with a fluorescence-enabled self-reporting functionality allows monitoring of the state of health of RFBs. To accelerate the discovery of redoxmers with desired properties, state-of-the- art machine learning ( ML) methods, such as multiobjective Bayesian optimization (MBO), are useful. Here, we first employed density functional theory calculations to generate a database of reduction potentials, solvation free energies, and absorption wavelengths for 1400 redoxmer molecules based on a 2,1,3-benzothiadiazole (BzNSN) core structure. From the computed properties, we identified 22 Pareto-optimal molecules that represent best trade-off among all of the desired properties. We further utilized these data to develop and benchmark an MBO approach to identify candidates quickly and efficiently with multiple targeted properties. With MBO, optimal candidates from the 1400-molecule data set can be identified at least 15 times more efficiently compared to the brute force or random selection approach. Importantly, we utilized this approach for discovering promising redoxmers from an unseen database of 1 million BzNSN-based molecules, where we discovered 16 new Pareto-optimal molecules with significant improvements in properties over the initial 1400 molecules. Furthermore, we anticipate that this active learning technique is general and can be utilized for the discovery of any class of functional materials that satisfies multiple desired property criteria.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Contingency Contractor Optimization Phase 3 Extension Quick Start Guide: Contingency Contractor Optimization Tool - Engineering Prototype (Release 2.3)

This Quick Start Guide is an abbreviated version of the Contingency Contractor Optimization Phase 3, User Manual for the Contingency Contractor Optimization Tool engineering prototype. It focuses on providing quick access instructions to the core activities of the two main user roles: Planning Manager and Analyst. Based on an electronic storyboard prototype developed in Phase 2, the Contingency Contractor Optimization Tool engineering prototype was refined in Phase 3 of the OSD ATL Contingency Contractor Optimization to support strategic planning for contingency contractors. The tool uses a model to optimize the total workforce mix by minimizing the combined total costs for the selected mission scenarios. The model will optimize the match of personnel types (military, DoD civilian, and contractors) and capabilities to meet the mission requirements as effectively as possible, based on risk, cost, and other requirements.

42 ENGINEERING↗

Contingency Contractor Optimization Phase 3 Quick Start Guide Contingency Contractor Optimization Tool Prototype - Release 2.2

This Quick Start Guide is an abbreviated version of the Contingency Contractor Optimization Phase 3, User Manual for the Contingency Contractor Optimization Tool engineering prototype. It focuses on providing quick access instructions to the core activities of the two main user roles: Planning Manager and Analyst. Based on an electronic storyboard prototype developed in Phase 2, the Contingency Contractor Optimization Tool engineering prototype was refined in Phase 3 of the OSD ATL Contingency Contractor Optimization to support strategic planning for contingency contractors. The tool uses a model to optimize the total workforce mix by minimizing the combined total costs for the selected mission scenarios. The model will optimize the match of personnel types (military, DoD civilian, and contractors) and capabilities to meet the mission requirements as effectively as possible, based on risk, cost, and other requirements.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

A Task-Optimized Neural Network Replicates Human Auditory Behavior, Predicts Brain Responses, and Reveals a Cortical Processing Hierarchy

A core goal of auditory neuroscience is to build quantitative models that predict cortical responses to natural sounds. Reasoning that a complete model of auditory cortex must solve ecologically relevant tasks, we optimized hierarchical neural networks for speech and music recognition. The best-performing network contained separate music and speech pathways following early shared processing, potentially replicating human cortical organization. The network performed both tasks as well as humans and exhibited human-like errors despite not being optimized to do so, suggesting common constraints on network and human performance. The network predicted fMRI voxel responses substantially better than traditional spectrotemporal filter models throughout auditory cortex. It also provided a quantitative signature of cortical representational hierarchy—primary and non-primary responses were best predicted by intermediate and late network layers, respectively. Here the results suggest that task optimization provides a powerful set of tools for modeling sensory systems.

59 BASIC BIOLOGICAL SCIENCES↗

LDRD HPC4Energy Wrapup Report - LDRD 12-ERD-074

High-performance computing and simulation has the potential to optimize production, distribution, and conversion of energy. Although a number of concepts have been discussed, a comprehensive research project to establish and quantify the effectiveness of computing and simulation at scale to core energy problems has not been conducted. We propose to perform the basic research to adapt existing high-performance computing tools and simulation approaches to two selected classes of problems common across the energy sector. The first, applying uncertainty quantification and contingency analysis techniques to energy optimization, allows us to assess the effectiveness of LLNL core competencies to problems such as grid optimization and building-system efficiency. The second, applying adaptive meshing and numerical analysis techniques to physical problems at fine scale, could allow immediate impacts in key areas such as efficient combustion and fracture and spallation. By creating an integrated project team with the necessary expertise, we can efficiently address these issues, delivering both near-term results as well as quantifying developments needed to address future energy challenges.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Propagation of radio frequency waves through turbulent plasmas

The practical and economic viability of tokamak fusion reactors depends, in a significant way, on the efficiency of radio frequency (RF) waves to deliver energy and momentum to the plasma in the core of the reactor. The RF electromagnetic waves, excited by antenna structures placed near the wall of a tokamak, have to propagate through the turbulent edge plasma along their path to the core of the fusion device. In present day experiments, the radial width of the edge region and scrape-off layer is of the order of a few centimeters. In ITER, and in future fusion reactors, this width will be of the order of tens of centimeters. Any effects on RF waves due to plasma turbulence have to be properly understood in order to optimize the delivery of RF energy and momentum into the core. This paper is on a multi-pronged, theoretical and computational, approach that is being pursued to quantify the effect of edge plasma turbulence on the propagation of RF waves. The theoretical and analytical models are based on solutions of the Faraday-Ampere equation in a magnetized plasma and on the Kirchhoff tangent plane approximation. An effective medium approach has been developed so as to approximate the permittivity of a turbulent plasma by analytical expressions. The computations are being carried out with a newly developed code ScaRF that is based on the finite difference finite domain technique for solving Maxwell's equations. The plasma permittivity can be assigned as desired. The code is being used to validate the analytical and theoretical models and to evaluate their limitations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Photo-physical properties enhancement of bare and core-shell quantum dots

Semiconductor nanocrystals (NCs) (also known as quantum dots, QDs) have attracted immense attention for their size-tunable optical properties that makes them impressive candidates for solar cells, light emitting devices, lasers, as well as biomedical imaging. However monodispersity, high and consistent photoluminescence, photostability, and biocompatibility are still major challenges. This work focuses on optimizing the photophysical properties and biocompatibility of QDs by forming core-shell nanostructures and their encapsulation by a carrier. Highly luminescent CdS and CdS-ZnS core-shell QDs with 5 nm sizes were synthesized using a facile approach based on pyrolysis of the single molecule precursors. After capping the CdS QDs with a thin layer of ZnS to reduce toxicity, the photoluminescence and photostability of the core-shell QDs was significantly enhanced. To make both the bare and core/shell structure QDs more resistant against photochemical reactions, a mesoporous silica layer was grown on the QDs through a reverse microemulsion technique based on hydrophobic interaction. This encapsulation enhanced the quantum yield and photostability compared to the bare QDs by providing much stronger resistance to oxidation and Oswald ripening of QDs. Encapsulation also improved biocompatibility of QDs that was evaluated with human umbilical vein endothelial cell lines (HUVEC)

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

INDUCED ROTATION IN THREE-DIMENSIONAL SIMULATIONS OF CORE-COLLAPSE SUPERNOVAE: IMPLICATIONS FOR PULSAR SPINS

It has been suggested that the observed rotation periods of radio pulsars might be induced by a non-axisymmetric spiral-mode instability in the turbulent region behind the stalled supernova bounce shock, even if the progenitor core was not initially rotating. In this paper, using the three-dimensional Adaptive Mesh Refinement code CASTRO with a realistic progenitor and equation of state and a simple neutrino heating and cooling scheme, we present a numerical study of the evolution in three dimensions of the rotational profile of a supernova core from collapse, through bounce and shock stagnation, to delayed explosion. By the end of our simulation ({approx}420 ms after core bounce), we do not witness significant spin-up of the proto-neutron star core left behind. However, we do see the development before the explosion of strong differential rotation in the turbulent gain region between the core and stalled shock. Shells in this region acquire high spin rates that reach {approx}150 Hz, but this region contains too little mass and angular momentum to translate, even if left behind, into rapid rotation for the full neutron star. We also find that much of the induced angular momentum is likely to be ejected in the explosion, and moreover that even if the optimal amount of induced angular momentum is retained in the core, the resulting spin period is likely to be quite modest. Nevertheless, induced periods of seconds are possible.

79 ASTRONOMY AND ASTROPHYSICS↗

Collaborating CPU and GPU for large-scale high-order CFD simulations with complex grids on the TianHe-1A supercomputer

Programming and optimizing complex, real-world CFD codes on current many-core accelerated HPC systems is very challenging, especially when collaborating CPUs and accelerators to fully tap the potential of heterogeneous systems. In this paper, with a tri-level hybrid and heterogeneous programming model using MPI + OpenMP + CUDA, we port and optimize our high-order multi-block structured CFD software HOSTA on the GPU-accelerated TianHe-1A supercomputer. HOSTA adopts two self-developed high-order compact definite difference schemes WCNS and HDCS that can simulate flows with complex geometries. We present a dual-level parallelization scheme for efficient multi-block computation on GPUs and perform particular kernel optimizations for high-order CFD schemes. The GPU-only approach achieves a speedup of about 1.3 when comparing one Tesla M2050 GPU with two Xeon X5670 CPUs. To achieve a greater speedup, we collaborate CPU and GPU for HOSTA instead of using a naive GPU-only approach. We present a novel scheme to balance the loads between the store-poor GPU and the store-rich CPU. Taking CPU and GPU load balance into account, we improve the maximum simulation problem size per TianHe-1A node for HOSTA by 2.3×, meanwhile the collaborative approach can improve the performance by around 45% compared to the GPU-only approach. Further, to scale HOSTA on TianHe-1A, we propose a gather/scatter optimization to minimize PCI-e data transfer times for ghost and singularity data of 3D grid blocks, and overlap the collaborative computation and communication as far as possible using some advanced CUDA and MPI features. Scalability tests show that HOSTA can achieve a parallel efficiency of above 60% on 1024 TianHe-1A nodes. With our method, we have successfully simulated an EET high-lift airfoil configuration containing 800M cells and China's large civil airplane configuration containing 150M cells. To our best knowledge, those are the largest-scale CPU–GPU collaborative simulations that solve realistic CFD problems with both complex configurations and high-order schemes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Communication: An efficient approach to compute state-specific nuclear gradients for a generic state-averaged multi-configuration self consistent field wavefunction

We present a new, very efficient semi-numerical approach for the computation of state-specific nuclear gradients of a generic state-averaged multi-configuration self consistent field wavefunction. Our approach eliminates the costly coupled-perturbed multi-configuration Hartree-Fock step as well as the associated integral transformation stage. The details of the implementation within the Firefly quantum chemistry package are discussed and several sample applications are given. The new approach is routinely applicable to geometry optimization of molecular systems with 1000+ basis functions using a standalone multi-core workstation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

X-ray FEL linear accelerator design via start-to-end global optimization

An X-ray Free Electron Laser (FEL) prefers using an electron beam with low emittance, small energy spread, and a high core current to generate coherent radiation through an undulator. In order to attain such a high brightness beam, the linear accelerator beam dynamics design generally involves separate photoinjector optimization and linac optimization. In this paper, we propose a new beam dynamics design strategy based on global optimization with fast start-to-end simulations from the photocathode to the end of the accelerator. The new start-to-end model significantly reduces the simulation time and makes the global optimization practical. The global optimization method avoids the need to choose a single solution based on bunch length at the injector exit for the linac optimization and helps find the solution with unfavorable bunch length at the injector exit but better phase space distribution that can result in better final electron beam phase space distribution at the entrance of the undulator. Here, using the start-to-end global optimization, we showed in an application example, with a 100 pC beam that good transverse emittance and over kilo-Ampere final core current can be attained using a photoinjector that consists of a VHF gun and boosting RF cavities.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Theoretical and computational studies on the scattering of radio frequency waves by fluctuations

The practical and economic viability of tokamak fusion reactors depends, in a significant way, on the efficiency of radio frequency (RF) waves to deliver energy and momentum to the plasma in the core of the reactor. Among the various attributes of RF waves is their ability to heat magnetically confined plasmas, induce plasma currents in an effort to achieve steady state, and modify the current profile so as to control plasma instabilities like the neoclassical tearing modes. The RF electromagnetic waves, excited by antenna structures placed near the wall of a tokamak, have to propagate through the turbulent plasma in the scrape-off layer (SOL) along their path to the core plasma. While the propagation and damping of RF waves in the core is reasonably well understood, the same is not true for RF propagation through the SOL. In present day fusion devices, the radial width of the SOL is of the order of a few centimeters. In ITER and in future fusion reactors this width will be of the order of tens of centimeters. Any deleterious effects on RF waves due to plasma turbulence in the SOL has to be properly understood in order to optimize the delivery of RF energy and momentum into the core. This paper is on a multi-pronged approach that is being pursued to quantify the effect of SOL plasma on RF waves. The SOL is composed of coherent filamentary, or blob like, structures and incoherent fluctuations. For coherent structures a full-wave theoretical model has been developed. This model is used to benchmark computational codes that are subsequently used to study general distribution of filaments, thereby extending the range of the theoretical formulation. For incoherent fluctuations, a common approach towards quantifying the effects of turbulence is the Kirchhoff technique. This technique is based on physical optics and the wave fields at any point on a spatially varying surface are approximated to be the same as the fields on a tangent plane at that point. The results from the theoretical analysis are compared with full-wave numerical simulations for incoherent fluctuations. The final part of these studies is to construct the effective permittivity of a turbulent plasma that is a mix of coherent and incoherent fluctuations. Towards this end, the ``effective medium approximation'' is being used to construct the permittivity of the turbulent plasma that will be used in full-wave and physical optics studies of scattering. All these approaches are distinctly different from previous studies on the RF wave propagation through turbulent plasmas. The theory and computations discussed in this paper apply to RF waves in any frequency range and for arbitrary variations in density, and reveal new and important physical insights into the scattering of RF waves.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Spanning the Core Design Space with Binary Perturbations - A Mathematical Investigation

A reactor core design engineer, even one with many years of experience or one using advanced fuel pattern optimization software, will likely fine tune the pattern before finalizing the design. Fine tuning can further minimize local enthalpy peaks, optimize reactivity to extend burnup, and add additional margin to limits on reactivity coefficients or heat flux. For reactors that have reached an equilibrium fuel cycle, the number of feeds each cycle is typically the similar to previous cycles as is their placement in the core. It is then the engineer's responsibly to efficiently select the placement of burned assemblies to ensure optimal fuel utilization, satisfy safety limits, and meet cycle energy requirements. One of the engineer's most commonly used tools in this fine tuning investigation is to swap the positions of two assemblies, most likely two previously irradiated ('burned') assemblies since their reactivity is lower than fresh fuel. Such an operation is referred to in this work as a binary perturbation or a 'swap'. If quarter core symmetry is maintained, the perturbation translates to the other three quadrants. Likewise if eighth core symmetry is maintained, the perturbation translates to other seven octants. The question is then, how much of the core design space can binary perturbations possibly span? This work seeks to quantitatively define the space spanned by m number of binary perturbations as a function of variable size through combinatorial principles and computer simulation. The results of this study are useful in understanding the in-core fuel management problem faced by both professionals who employ hand manipulations and those who attempt stochastic solutions of the problem.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Analog Systems for Edge Optimization

Over the past decade, analog computing has the subject of substantial research interest providing a path toward improved computational efficiency in the post-Dennard era. Analog matrix vector multiplication (MVM) accelerators provide a popular approach given the ubiquity of MVM operations in numerous applications. However, historically analog computing systems can struggle with applications requiring high precision due to the inherent susceptibility of these systems to analog non-idealities. Therefore, prior work on analog systems has focused either on applications known to be tolerant of limited precision (e.g., neural network inference), or using expensive techniques to emulate high-precision using many analog MVM operations. In this work, we propose an alternative approach. Motivated by recent advances in inexact nonlinear solvers and optimizers, we explore the potential of co-designing optimization algorithms which can take full advantage of the fundamentally inexact analog MVM operations. To enable these co-designed algorithms we also develop a general mathematical theory of the precision and energy efficiency of analog operations, and a new system architecture for tightly-coupled analog and digital computation. Finally, we examine the applicability of analog computing to a wider class of symmetric positive definite systems and find potential in using analog operations as a sparse approximate inverse preconditioner. With these core innovations, this project provides a path toward effectively implementing optimization algorithms on power-constrained autonomous and semi-autonomous systems.

97 MATHEMATICS AND COMPUTING↗