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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 433 records · Page 24
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Origins and consequences of asymmetric nano-FTIR interferograms

Infrared scattering-type near-field optical microscopy, IR s-SNOM, and its broadband variant, nano-FTIR, are pioneering, flagship techniques for their ability to provide molecular identification and material optical property information at a spatial resolution well below the far-field diffraction limit, typically less than 25 nm. While s-SNOM and nano-FTIR instrumentation and data analysis have been discussed previously, there is a lack of information regarding experimental parameters for the practitioner, especially in the context of previously developed frameworks. Like conventional FTIR spectroscopy, the critical component of a nano-FTIR instrument is an interferometer. However, unlike FTIR spectroscopy, the resulting interference patterns or interferograms are typically asymmetric. Here, we unambiguously describe the origins of asymmetric interferograms recorded with nano-FTIR instruments, give a detailed analysis of potential artifacts, and recommend optimal instrument settings as well as data analysis parameters.

47 OTHER INSTRUMENTATION↗
DOE OSTI2013

Association Mapping and the Genomic Consequences of Selection in Sunflower

The combination of large-scale population genomic analyses and trait-based mapping approaches has the potential to provide novel insights into the evolutionary history and genome organization of crop plants. Here, we describe the detailed genotypic and phenotypic analysis of a sunflower (Helianthus annuus L.) association mapping population that captures nearly 90% of the allelic diversity present within the cultivated sunflower germplasm collection. We used these data to characterize overall patterns of genomic diversity and to perform association analyses on plant architecture (i.e., branching) and flowering time, successfully identifying numerous associations underlying these agronomically and evolutionarily important traits. Overall, we found variable levels of linkage disequilibrium (LD) across the genome. In general, islands of elevated LD correspond to genomic regions underlying traits that are known to have been targeted by selection during the evolution of cultivated sunflower. In many cases, these regions also showed significantly elevated levels of differentiation between the two major sunflower breeding groups, consistent with the occurrence of divergence due to strong selection. One of these regions, which harbors a major branching locus, spans a surprisingly long genetic interval (ca. 25 cM), indicating the occurrence of an extended selective sweep in an otherwise recombinogenic interval.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2013

Changes of Soil Bacterial Diversity as a Consequence of Agricultural Land Use in a Semi-Arid Ecosystem

Natural scrublands in semi-arid deserts are increasingly being converted into fields. This results in losses of characteristic flora and fauna, and may also affect microbial diversity. In the present study, the long-term effect (50 years) of such a transition on soil bacterial communities was explored at two sites typical of semi-arid deserts. Comparisons were made between soil samples from alfalfa fields and the adjacent scrublands by two complementary methods based on 16S rRNA gene fragments amplified from total community DNA. Denaturing gradient gel electrophoresis (DGGE) analyses revealed significant effects of the transition on community composition of Bacteria, Actinobacteria, Alpha- and Betaproteobacteria at both sites. PhyloChip hybridization analysis uncovered that the transition negatively affected taxa such as Acidobacteria, Chloroflexi, Acidimicrobiales, Rubrobacterales, Deltaproteobacteria and Clostridia, while Alpha-, Beta- and Gammaproteobacteria, Bacteroidetes and Actinobacteria increased in abundance. Redundancy analysis suggested that the community composition of phyla responding to agricultural use (except for Spirochaetes) correlated with soil parameters that were significantly different between the agricultural and scrubland soil. The arable soils were lower in organic matter and phosphate concentration, and higher in salinity. The variation in the bacterial community composition was higher in soils from scrubland than from agriculture, as revealed by DGGE and PhyloChip analyses, suggesting reduced beta diversity due to agricultural practices. The long-term use for agriculture resulted in profound changes in the bacterial community and physicochemical characteristics of former scrublands, which may irreversibly affect the natural soil ecosystem.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

The Phenazine 2-Hydroxy-Phenazine-1-Carboxylic Acid Promotes Extracellular DNA Release and Has Broad Transcriptomic Consequences in Pseudomonas chlororaphis 30–84

Enhanced production of 2-hydroxy-phenazine-1-carboxylic acid (2-OH-PCA) by the biological control strain Pseudomonas chlororaphis 30–84 derivative 30-84O* was shown previously to promote cell adhesion and alter the three-dimensional structure of surfaceattached biofilms compared to the wild type. The current study demonstrates that production of 2-OH-PCA promotes the release of extracellular DNA, which is correlated with the production of structured biofilm matrix. Moreover, the essential role of the extracellular DNA in maintaining the mass and structure of the 30–84 biofilm matrix is demonstrated. To better understand the role of different phenazines in biofilm matrix production and gene expression, transcriptomic analyses were conducted comparing gene expression patterns of populations of wild type, 30-84O* and a derivative of 30–84 producing only PCA (30-84PCA) to a phenazine defective mutant (30-84ZN) when grown in static cultures. RNA-Seq analyses identified a group of 802 genes that were differentially expressed by the phenazine producing derivatives compared to 30-84ZN, including 240 genes shared by the two 2-OH-PCA producing derivatives, the wild type and 30-84O*. A gene cluster encoding a bacteriophage- derived pyocin and its lysis cassette was upregulated in 2-OH-PCA producing derivatives. A holin encoded in this gene cluster was found to contribute to the release of eDNA in 30–84 biofilm matrices, demonstrating that the influence of 2-OH-PCA on eDNA production is due in part to cell autolysis as a result of pyocin production and release. The results expand the current understanding of the functions different phenazines play in the survival of bacteria in biofilm-forming communities.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

As if Biomarker Discovery Isn't Hard Enough: the Consequences of Poorly Characterized Reagents

The advent of high throughput omic technologies over the past two decades has driven a vast expansion in the search for clinical biomarkers, as manifested by the plethora of publications on biomarker discovery (over 8,600) listed on PubMed since 2000. Unfortunately, the same time period has seen a relative dearth of clinically validated biomarkers that have received FDA approval; only 10 new cancer biomarkers have been approved by the FDA in the same time period [1].

biomarker discovery↗
DOE OSTI2020

Heavy and wet: The consequences of violating assumptions of measuring soil microbial growth efficiency using the 18O water method

Soils store more carbon than the biosphere and atmosphere combined, and the efficiency to which soil microorganisms allocate carbon to growth rather than respiration is increasingly considered a proxy for the soil capacity to store carbon. This carbon use efficiency (CUE) is measured via different methods, and more recently, the 18O-H2O method has been embraced as a significant improvement for measuring CUE of soil microbial communities. Based on extrapolating 18O incorporation into DNA to new biomass, this measurement makes various implicit assumptions about the microbial community at hand. Here we conducted a literature review to evaluate how viable these assumptions are and then developed a mathematical model to test how violating them affects estimates of the growth component of CUE in soil. We applied this model to previously collected data from two kinds of soil microbial communities. By changing one parameter at a time, we confirmed our previous observation that CUE was reduced by fungal removal. Our results also show that depending on the microbial community composition, there can be substantial discrepancies between estimated and true microbial growth. Of the numerous implicit assumptions that might be violated, not accounting for the contribution of sources of oxygen other than extracellular water to DNA leads to a consistent underestimation of CUE. We present a framework that allows researchers to evaluate how their experimental conditions may influence their 18O-H2O-based CUE measurements and suggest the parameters that need further constraining to more accurately quantify growth and CUE.

Environmental Sciences & Ecology↗
DOE OSTI2017

The Beam-Beam Effect and its Consequences for the Jefferson Lab EIC

In this work we address the effect of beam jitter on emittance growth as caused by the beam-beam effect on the Jefferson Lab Electron Ion Collider (JLEIC). This proposed collider would collide up to 100 GeV proton beams with up to 10 GeV electron beams. Due to the asymmetric rigidities of the beams and their non-linear lensing action on each other during a collision, collective effects can limit beam storage times. Using simulations we determined that one of JLEIC’s synchronization concepts would require a new set of software tools to accurately understand phase space evolution.

Nissen, Edward↗
DOE OSTI2015

A global perspective on wetland salinization: ecological consequences of a growing threat to freshwater wetlands

Salinization, a widespread threat to the structure and ecological functioning of inland and coastal wetlands, is currently occurring at an unprecedented rate and geographic scale. The causes of salinization are diverse and include alterations to freshwater flows, land-clearance, irrigation, disposal of wastewater effluent, sea level rise, storm surges, and applications of de-icing salts. Climate change and anthropogenic modifications to the hydrologic cycle are expected to further increase the extent and severity of wetland salinization. Salinization alters the fundamental physicochemical nature of the soil-water environment, increasing ionic concentrations and altering chemical equilibria and mineral solubility. Increased concentrations of solutes, especially sulfate, alter the biogeochemical cycling of major elements including carbon, nitrogen, phosphorus, sulfur, iron, and silica. The effects of salinization on wetland biogeochemistry typically include decreased inorganic nitrogen removal (with implications for water quality and climate regulation), decreased carbon storage (with implications for climate regulation and wetland accretion), and increased generation of toxic sulfides (with implications for nutrient cycling and the health/functioning of wetland biota). Indeed, increased salt and sulfide concentrations induce physiological stress in wetland biota and ultimately can result in large shifts in wetland communities and their associated ecosystem functions. The productivity and composition of freshwater species assemblages will be highly altered, and there is a high potential for the disruption of existing interspecific interactions. Although there is a wealth of information on how salinization impacts individual ecosystem components, relatively few studies have addressed the complex and often non-linear feedbacks that determine ecosystem-scale responses or considered how wetland salinization will affect landscape-level processes. Although the salinization of wetlands may be unavoidable in many cases, these systems may also prove to be a fertile testing ground for broader ecological theories including (but not limited to): investigations into alternative stable states and tipping points, trophic cascades, disturbance-recovery processes, and the role of historical events and landscape context in driving community response to disturbance.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Here, the United States has mandated the production of 80 billion liters of second–generation biofuel by 2022, and several approaches to meet this target focus on using ligno–cellulosic ethanol from perennial grasses and non–food crops. The large–scale deployment of biofuel agronomy should consider high–yielding crops that meet ethanol production goals, choose appropriate landscapes for biofuel crops from a climate and food production standpoint, and a full consideration of the environmental impact of large–scale land use change. The southeastern United States has a long growing season conducive for producing high–yielding crops, and is relatively less important to US food production than the rain–fed Midwestern states that have been extensively studied for biofuel crops. We use the DayCent biogeochemical model to run simulation experiments to test the hypotheses that converting a large swath of traditional agriculture in the southeastern United States that is already utilized for bioenergy production (assuming 35% of current corn–soy, and 10% of grazed pasture hectares; ~950,000 ha) to energy cane will result in greater biomass production, increased soil C storage, decreased soil N losses and lower greenhouse gas emissions than a landscape of corn–soy rotations and interspersed grazed pasture. Our simulations suggest that energy cane above–ground productivity on former pasture and corn–soy fields would be between 52–59 million Mg dry mass per year, resulting in 21.1–23.7 billion liters of ligno–cellulosic ethanol, or ~28% of the 2022 US government mandate. DayCent did not predict significant changes in soil C flux from land conversion to energy cane, but simulations predicted lower rates of N loss compared to current agriculture. GHG emissions from energy cane landscapes were substantially higher on former pasture, but an order of magnitude lower when compared to corn–soy hectares. While further study is needed to ascertain the full economic and industrial feasibility of converting nearly 1,000,000 ha of land to energy cane production, our results suggest that such an undertaking could meet a sizeable fraction of the US ethanol mandate, reduce N pollution and GHG emissions, and avoid compromising land devoted to food production in the southeastern United States.

southeastern United States↗
DOE OSTI2014

Evaluation of DOE Technical Standard 1027 and Supplemental Guidance NA-1 SD G 1027. Examining Radionuclide NESHAP Impacts and Off-Site Dose Consequences

This document is intended to briefly describe changes to Department of Energy Technical Standard 1027 and the associated effects of these changes on radionuclide air emissions from operations at Los Alamos National Laboratory (LANL). Each general category of LANL radionuclide air emissions is evaluated, and the manner in which changes to Standard 1027 would affect the emissions and subsequent doses to members of the public is discussed. While the material discussed in this document applies specifically to LANL operations, the information may be generally applicable to other DOE sites in some cases.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2013

Consequences of altering rubisco regulation

Research examined the thermal stability and propensity for aggregation of wild type and the C- and N-terminally modified forms of activase to determine if loss of activity under heat stress is dependent on protein aggregation. The results showed that 1) loss of activity at high temperature is independent of aggregation; 2) activase with both C- and N-terminal S-Tags are more susceptible to aggregation than wild type activase, 3) aggregation is highly dependent on the concentration of Mg2+ and 4) the ATP analog, ATPgammaS, protects against both thermal inactivation and aggregation.

99 GENERAL AND MISCELLANEOUS↗