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At least 433 records · Page 24

Lung Volume Reduction After Stereotactic Ablative Radiation Therapy of Lung Tumors: Potential Application to Emphysema

Purpose: Lung volume reduction surgery (LVRS) improves dyspnea and other outcomes in selected patients with severe emphysema, but many have excessive surgical risk for LVRS. We analyzed the dose-volume relationship for lobar volume reduction after stereotactic ablative radiation therapy (SABR) of lung tumors, hypothesizing that SABR could achieve therapeutic volume reduction if applied in emphysema. Methods and Materials: We retrospectively identified patients treated from 2007 to 2011 who had SABR for 1 lung tumor, pre-SABR pulmonary function testing, and ≥6 months computed tomographic (CT) imaging follow-up. We contoured the treated lobe and untreated adjacent lobe(s) on CT before and after SABR and calculated their volume changes relative to the contoured total (bilateral) lung volume (TLV). We correlated lobar volume reduction with the volume receiving high biologically effective doses (BED, α/β = 3). Results: 27 patients met the inclusion criteria, with a median CT follow-up time of 14 months. There was no grade ≥3 toxicity. The median volume reduction of the treated lobe was 4.4% of TLV (range, −0.4%-10.8%); the median expansion of the untreated adjacent lobe was 2.6% of TLV (range, −3.9%-11.6%). The volume reduction of the treated lobe was positively correlated with the volume receiving BED ≥60 Gy (r{sup 2}=0.45, P=.0001). This persisted in subgroups determined by high versus low pre-SABR forced expiratory volume in 1 second, treated lobe CT emphysema score, number of fractions, follow-up CT time, central versus peripheral location, and upper versus lower lobe location, with no significant differences in effect size between subgroups. Volume expansion of the untreated adjacent lobe(s) was positively correlated with volume reduction of the treated lobe (r{sup 2}=0.47, P<.0001). Conclusions: We identified a dose-volume response for treated lobe volume reduction and adjacent lobe compensatory expansion after lung tumor SABR, consistent across multiple clinical parameters. These data serve to inform our ongoing prospective trial of stereotactic ablative volume reduction (SAVR) for severe emphysema in poor candidates for LVRS.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Polyacrylonitrile Interactions with Carbon Nanotubes in Solution: Conformations and Binding as a Function of Solvent, Temperature, and Concentration

Abstract Polyacrylonitrile (PAN) is among the most promising precursor polymers to produce strong and lightweight carbon fiber. Conformations in solution and the extent of binding to carbon nanotubes (CNTs) are critical during gel spinning and for alignment of graphitic layers upon carbonization. Here, quantitative insights into these processes are reported using molecular dynamics simulations at the atomic scale including virtual π electrons and comparisons to experimental data. Common solvents for fiber spinning induce significant differences in PAN conformation in dilute solutions at 25 °C with persistence lengths between 0.5 and 2 nm. Variations in conformation become smaller at 75 °C, in the presence of CNTs, and at higher PAN concentration. “Aging” of PAN conformations in dimethylformamide and dimethylsulfoxide at higher temperature is explained and a correlation between extended polymer conformations and increased binding to CNTs is identified in dilute solutions. PAN is overall barely attracted to CNTs under common solution conditions and enters significant surface contact only at higher concentration as solvent is physically removed. The impact of temperature is small, whereby binding increases at lower temperatures. The results provide guidance to control interactions of polymers with CNTs to induce distinct conformations and specific binding at the early stages of assembly.

Pramanik, Chandrani↗

Skyrmion relaxation dynamics in the presence of quenched disorder

Using Langevin molecular dynamics simulations we study relaxation processes of interacting skyrmion systems with and without quenched disorder. Here, using the typical diffusion length as the time-dependent length characterizing the relaxation process, we find that clean systems always display dynamical scaling, and this even in cases where the typical length is not a simple power law of time. In the presence of the Magnus force, two different regimes are identified as a function of the noise strength. The Magnus force has also a major impact when attractive pinning sites are present, as this velocity-dependent force helps skyrmions to bend around defects and avoid caging effects. With the exception of the limit of large noise, for which dynamical scaling persists even in the presence of quenched disorder, attractive pinning sites capture a substantial fraction of skyrmions which results in a complex behavior of the two-time autocorrelation function that is not reproduced by a simple aging scaling ansatz.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

To examine the contributions of impaired gut microbial community development to childhood undernutrition, we combined metabolomic and proteomic analyses of plasma samples with metagenomic analyses of fecal samples to characterize the biological state of Bangladeshi children with severe acute malnutrition (SAM) as they transitioned, after standard treatment, to moderate acute malnutrition (MAM) with persistent microbiota immaturity. Host and microbial effects of microbiota-directed complementary food (MDCF) prototypes targeting weaning-phase bacterial taxa underrepresented in SAM and MAM microbiota were characterized in gnotobiotic mice and gnotobiotic piglets colonized with age- and growth-discriminatory bacteria. A randomized, double-blind controlled feeding study identified a lead MDCF that changes the abundances of targeted bacteria and increases plasma biomarkers and mediators of growth, bone formation, neurodevelopment, and immune function in children with MAM.

59 BASIC BIOLOGICAL SCIENCES↗

Genomic signatures in Variovorax enabling colonization of the Populus endosphere

Microbial colonization of plant roots involves strong selective pressures that shape the structure and function of root-associated communities. In particular, the endosphere represents a highly selective environment requiring host entry and in planta persistence. However, strain-specific microbial traits that enable endosphere colonization remain poorly understood. Here, we use a defined, genome-resolved community of 28 Variovorax strains isolated from the roots of Populus deltoides and Populus trichocarpa (poplar trees) to determine which strains partition between rhizosphere and endosphere compartments and to identify the genomic traits associated with endosphere specialization. By combining strain-resolved metagenomic profiling, comparative genomics, and functional assays, we demonstrate that dominant endosphere colonizers are enriched in genes related to nutrient metabolism, redox balance, transcriptional regulation, and a conserved L-fucose utilization pathway experimentally shown to enhance root colonization. Not all strains succeed through the same strategy. Community-wide functional profiling revealed a distinct and reduced set of traits in the endosphere, including orthogroups associated with low-abundance strains that were overlooked in strain-level analyses. These findings reveal that multiple ecological strategies, such as metabolic competition, regulatory adaptation, and niche specialization, can support endosphere colonization. Our results advance the understanding of how bacterial colonization traits are distributed and deployed within a plant microbiome and suggest that host filtering selects for distinct, and sometimes complementary, microbial strategies. This work supports a shift toward mechanistic, genome-resolved models of microbiome assembly and offers a framework for linking microbial function to host colonization success.

comparative genomics↗

Analysis of Deformation and Fracture Mechanisms in the Harvested High-Dose Baffle-Former Bolt with Stress-Corrosion Cracks Formed While in Service

This report presents the results of advanced mechanical testing conducted on miniature tensile specimens excised from an irradiated baffle-former bolt, a commercial pressurized water reactor component. The specimens were extracted from the midsection of the bolt shank, where the estimated damage dose reached 23 displacements per atom. The mechanical testing included the following tests: (1) conventional tensile testing at room temperature, augmented by digital image correlation (DIC) to enable noncontact strain measurements, and (2) in situ tensile testing within a scanning electron microscopy (SEM) instrument equipped with energy-dispersive x-ray spectroscopy (EDS) and electron backscatter diffraction (EBSD) detectors to evaluate active deformation and fracture mechanisms. Additionally, SEM fractographic analysis revealed alterations in the fracture mechanism from a predominantly ductile fracture in nonirradiated steel to a mixed fracture mode (still dominating ductile and minor cleavage spots) in irradiated specimens derived from the baffle bolts. The findings indicate a complex strain localization behavior for in-service irradiated steel specimens. Beyond conventional necking at the macro scale and defect-free channel formation at the micro scale, DIC results identified the presence of deformation bands approximately 100 μm in width. These bands consist of chains of grains exhibiting elevated local strain levels and may be considered an intermediate or mesoscale level of strain localization. These bands become discernible near the yield stress as localized hot spots, areas of elevated strain, persisting throughout most of the experiment. The formation of mesoscale deformation bands as a strain localization mechanism may exacerbate the defect-free channel formation in irradiated materials, further promoting irradiation-assisted stress corrosion crack initiation.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Spatial Ecology of Blanding’s Turtles (Emydoidea blandingii) in Southcentral New Hampshire with Implications to Road Mortality

Understanding the spatial ecology and habitat requirements of rare turtle species and the factors that threaten their populations is important for the success of long-term conservation programs. We present results on an eight-year field study in which we used radiotelemetry to monitor the activity and habitat use of 23 adult (male, n = 7; female, n = 16) Blanding’s turtles in southcentral New Hampshire. We found that females occupied home ranges (as defined by minimum convex polygons) that were approximately two times larger than the home ranges of males. Despite the sex difference in home range size, we found no sex difference in core area size (defined as the 50% kernel density estimate). We found that activity patterns varied by season, with increased activity each month after hibernation, and peak activity coinciding with the late spring-early summer nesting season. We observed sex-based and seasonal differences in wetland use. Males appeared to prefer emergent and scrub-shrub wetlands in each season, whereas females preferred scrub-shrub wetlands in spring and ponds in summer and fall. We identified road mortality risk as a potentially important threat for this population because females crossed roads ten times more frequently than males (based on proportion of observations). The preservation of wetland networks, as well as the implementation of measures to minimize road mortality, are important considerations for the long-term persistence of this population.

Activity↗

Strong-Drive Limits in Josephson Circuits: From Chaos to an Unbound-Resonance Threshold

Strong microwave drives enable fast measurement and parametric control in superconducting circuits but can induce transitions out of the intended low-energy manifold. We develop a unified description of strong-drive limits in flux- and charge-driven Josephson circuits across drive frequency and dc flux bias. Using classical phase-space analysis and Floquet--Markov simulations, we identify distinct low- and high-frequency mechanisms. At low frequency, we characterize bound-state resonances and separatrix chaos and find that the flux-drive chaos threshold depends strongly on dc flux bias. At high frequency, these mechanisms are suppressed, and the dissipative steady state transfers from the central bound-state sector to outer resonances formed by above-barrier running trajectories. The resulting unbound-resonance threshold is nearly independent of drive frequency and circuit parameters over the regime studied and is controlled primarily by dc flux bias. Coherent simulations show that parametric operation persists beyond this threshold, but at a reduced rate, setting an effective upper bound on the achievable operation speed. We derive analytical criteria for both thresholds, validate them numerically, and experimentally confirm the predicted dc-bias dependence of the low-frequency threshold in a flux-driven SQUID. We also determine the timescales for transfer into the unbound-resonance regime and relaxation back to the bound-state manifold after the drive is removed. Finally, we relate the stability limits to a complementary picture based on the junction critical current and extend the framework to multitone drives and inductively shunted circuits. Together, these results identify the mechanisms limiting strong driving and suggest routes to extend the stable operating range of Josephson circuits.

You, Xinyuan [Fermilab] (ORCID:0000000291789419)↗

Long-term follow-up observations of extreme coronal line emitting galaxies

We present new spectroscopic and photometric follow-up observations of the known sample of extreme coronal line-emitting galaxies (ECLEs) identified in the Sloan Digital Sky Survey (SDSS). With these new data, observations of the ECLE sample now span a period of two decades following their initial SDSS detections. We confirm the non-recurrence of the iron coronal line signatures in five of the seven objects, further supporting their identification as the transient light echoes of tidal disruption events (TDEs). Photometric observations of these objects in optical bands show little overall evolution. In contrast, mid-infrared (MIR) observations show ongoing long-term declines consistent with power-law decay. The remaining two objects had been classified as active galactic nuclei (AGNs) with unusually strong coronal lines rather than being TDE related, given the persistence of the coronal lines in earlier follow-up spectra. We confirm this classification, with our spectra continuing to show the presence of strong, unchanged coronal line features and AGN-like MIR colors and behavior. We have constructed spectral templates of both subtypes of ECLE to aid in distinguishing the likely origin of newly discovered ECLEs. We highlight the need for higher cadence, and more rapid, follow-up observations of such objects to better constrain their properties and evolution. We also discuss the relationships between ECLEs, TDEs, and other identified transients having significant MIR variability.

79 ASTRONOMY AND ASTROPHYSICS↗

APT malware static trace analysis through bigrams and graph edit distance

Research and business organizations are vulnerable to attack by malware, particularly advanced persistent threat malware tailored for a specific target. Malware identification is made more difficult because samples can be subtly altered to avoid detection by methods that check for an identical match to known code. Different versions of an original piece of malware form a malware family. And when new malicious software is identified, reverse engineers seek to identify its origin and purpose. Knowing whether new malware is from a known family or a previously unobserved family aids the efficiency of reverse engineers. Furthermore, this article presents a three-stage method to classify new malware into a family by comparing its similarity to existing static traces, and assigning it to the most similar family. First, a fast filtering method creates a shortlist of samples with some similarity to the new malware, using a simple bigram comparison of the instructions. The second stage takes the call graph view of the shortlisted static traces and uses simulated annealing to estimate the graph edit distance, a measure of dissimilarity between graphs. Finally, a random forest classifier combines the previous two results to predict the family to which a new sample belongs. Our paper also considers how to detect when malware is from a new family.

97 MATHEMATICS AND COMPUTING↗

Magnon-Magnon Interaction Induced by Dynamic Coupling in a Hybrid Magnonic Crystal

We report a combined experimental and numerical investigation of spin-wave dynamics in a hybrid magnonic crystal consisting of a CoFeB artificial spin ice (ASI) of stadium-shaped nanoelements patterned atop a continuous NiFe film separated by a 5 nm Al 2 O 3 spacer. Using Brillouin light scattering spectroscopy, we probe the frequency dependence of thermal spin waves as functions of applied magnetic field and wavevector, revealing the decisive role of interlayer dipolar coupling in the magnetization dynamics. Micromagnetic simulations complement the experiments, showing a strong interplay between ASI edge modes and backward volume modes in the NiFe film. The contrast in saturation magnetization between CoFeB and NiFe enhances this coupling, leading to a pronounced hybridization manifested as a triplet of peaks in the BLS spectra predicted by simulations and observed experimentally. This magnon−magnon coupling persists over a wide magnetic field range, shaping both the spin-wave dispersion at fixed fields and the full frequency-field response throughout the magnetic hysteresis loop. Our findings establish how ASI geometry can selectively enhance specific spin-wave wavelengths in the underlying film, thereby boosting their amplitude and identifying them as preferential channels for spin wave transmission and manipulation.

Brillouin light scattering spectroscopy↗

Microtearing stability and turbulence in the pedestal: Linear gyrokinetics, reduced models, and nonlinear turbulent transport

Microtearing modes can play a crucial role in electron heat transport in tokamak plasmas, affecting both energy confinement and overall performance. This study investigates microtearing modes (MTM) stability and turbulence in a JET pedestal through gyrokinetic simulations using the Gene code, complemented by a reduced eigenvalue model. The focus is on how MTM properties depend on key plasma parameters, including collisionality and plasma beta β—the ratio of plasma pressure to magnetic pressure—the normalized toroidal wavenumber k y ρ s ⁠, where ρ s denotes the ion sound gyroradius (typically a few millimeters in edge plasmas) and isotope mass. Collisionality enhances MT growth rates, while increasing β leads to a shift from MTMs to kinetic-ballooning modes, typically for k y ρ s ⁠, where ρ s ≲ 0.2⁠. A purely collisionless branch of MTMs persists at low k y ρ s ⁠, where ρ s with distinctive properties including non-negligible particle flux and ion thermal transport. Isotope mass scans reveal modest reduction of MTM growth rates as ion mass decreases. Nonlinear simulations produce experimentally relevant transport levels. Numerical experiments turning off zonal flows and fields identify the critical role of zonal flows and zonal fields in regulating MTM turbulence. Their removal leads to a significant increase in electron heat flux. These findings provide new insight into MTM-driven transport and its impact on tokamak confinement and lay a foundation for reduced modeling and predictive capabilities.

Electrostatics↗

Bacterial and fungal composition and exometabolites control the development and persistence of soil water repellency

Soil water repellency (SWR), the reduced affinity of soil for water, is a phenomenon that affects soils globally. With worsening climate change, SWR is expected to increase emphasizing the need to understand the mechanisms driving SWR development and persistence. The importance of the soil microbes in SWR has been postulated for decades, but limited research has been conducted into whole-community interactions and the role of community metabolic activity. To address this gap in knowledge, we investigated the direct effect of microbial community composition, activity, and diversity, as well as their associated metabolites on the development and persistence of SWR by inoculating microcosms containing model soils with 15 different microbial communities and quantified respiration and SWR over time. Six communities that consistently produced either a hydrophobic or hydrophilic phenotype were characterized using metagenomics and metabolomics to determine the impact of microbial and metabolite composition and diversity on SWR. We identified several bacterial genera with significant changes in abundance between SWR phenotypes including Nocardiopsis and Kocuria in hydrophilic and Streptomyces and Cutibacterium in hydrophobic. We discovered that hydrophilic communities were more positively connected when compared to hydrophobic communities, which could be due to an increase in defense mechanism genes. Additionally, we identified specific metabolites associated with hydrophilic and hydrophobic phenotypes including an increase in the osmolyte ectoine in hydrophilic and an increase in plant-derived decomposition products in hydrophobic communities. Finally, our research suggests that fungi, previously thought to cause hydrophobicity, may actually contribute to hydrophilicity through their preferential consumption of hydrophobic compounds.

54 ENVIRONMENTAL SCIENCES↗

Fractal dimensions of jammed packings with power-law particle size distributions in two and three dimensions

Static structure factors are computed for large-scale, mechanically stable, jammed packings of frictionless spheres (three dimensions) and disks (two dimensions) with broad, power-law size dispersity characterized by the exponent -β. Here, the static structure factor exhibits diverging power-law behavior for small wave numbers, allowing us to identify a structural fractal dimension d f . In three dimensions, d f ≈ 2.0 for 2.5≤ β ≤ 3.8, such that each of the structure factors can be collapsed onto a universal curve. In two dimensions, we instead find 1.0≲ d f ≲1.34 for 2.1≤ β ≤ 2.9. Furthermore, we show that the fractal behavior persists when rattler particles are removed, indicating that the long-wavelength structural properties of the packings are controlled by the large particle backbone conferring mechanical rigidity to the system. A numerical scheme for computing structure factors for triclinic unit cells is presented and employed to analyze the jammed packings.

97 MATHEMATICS AND COMPUTING↗

THE HYPERACTIVE L DWARF 2MASS J13153094-2649513: CONTINUED EMISSION AND A BROWN DWARF COMPANION

We report new observations of the unusually active, high proper motion L5e dwarf 2MASS J13153094-2649513. Optical spectroscopy with Magellan/MagE reveals persistent nonthermal emission, with narrow H I Balmer, Na I and K I lines all observed in emission. Low-resolution near-infrared spectroscopy with the Infrared Telescope Facility/SpeX Spectrograph indicates the presence of a low-temperature companion, which is resolved through multi-epoch laser guide star adaptive optics imaging at the W. M. Keck Observatory. The co-moving companion is separated by 338 {+-} 4 mas, and its relative brightness ({Delta}K{sub s} = 5.09 {+-} 0.10) makes this system the second-most-extreme flux ratio very-low-mass binary identified to date. Resolved near-infrared spectroscopy with Keck/OSIRIS identifies the companion as a T7 dwarf. The absence of Li I absorption in combined-light optical spectroscopy constrains the system age to {approx}>0.8-1.0 Gyr, while the system's kinematics and unusually low mass ratio (M{sub 2}/M{sub 1} = 0.3-0.6) suggest that it is even older. A coevality test of the components also indicates an older age, but reveals discrepancies between evolutionary and atmosphere model fits of the secondary, which are likely attributable to poor reproduction of its near-infrared spectrum. With a projected separation of 6.6 {+-} 0.9 AU, the 2MASS J1315-2649 system is too widely separated for mass exchange or magnetospheric interactions to be powering its persistent nonthermal emission. Rather, the emission is probably chromospheric in nature, consistent with an inversion in the age-activity relation in which strong magnetic fields are maintained by relatively old and massive ultracool dwarfs.

79 ASTRONOMY AND ASTROPHYSICS↗

H{sup -} radio frequency source development at the Spallation Neutron Source

The Spallation Neutron Source (SNS) now routinely operates nearly 1 MW of beam power on target with a highly persistent {approx}38 mA peak current in the linac and an availability of {approx}90%. H{sup -} beam pulses ({approx}1 ms, 60 Hz) are produced by a Cs-enhanced, multicusp ion source closely coupled with an electrostatic low energy beam transport (LEBT), which focuses the 65 kV beam into a radio frequency quadrupole accelerator. The source plasma is generated by RF excitation (2 MHz, {approx}60 kW) of a copper antenna that has been encased with a thickness of {approx}0.7 mm of porcelain enamel and immersed into the plasma chamber. The ion source and LEBT normally have a combined availability of {approx}99%. Recent increases in duty-factor and RF power have made antenna failures a leading cause of downtime. This report first identifies the physical mechanism of antenna failure from a statistical inspection of {approx}75 antennas which ran at the SNS, scanning electron microscopy studies of antenna surface, and cross sectional cuts and analysis of calorimetric heating measurements. Failure mitigation efforts are then described which include modifying the antenna geometry and our acceptance/installation criteria. Progress and status of the development of the SNS external antenna source, a long-term solution to the internal antenna problem, are then discussed. Currently, this source is capable of delivering comparable beam currents to the baseline source to the SNS and, an earlier version, has briefly demonstrated unanalyzed currents up to {approx}100 mA (1 ms, 60 Hz) on the test stand. In particular, this paper discusses plasma ignition (dc and RF plasma guns), antenna reliability, magnet overheating, and insufficient beam persistence.

43 PARTICLE ACCELERATORS↗