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At least 415 records · Page 23

Structure-activity relationships of ω-Agatoxin IVA in lipid membranes

To analyze structural features of ω-Aga IVA, a gating modifier toxin from spider venom, we here investigated the NMR solution structure of ω-Aga IVA within DPC micelles. Under those conditions, the Cys-rich central region of ω-Aga IVA still retains the inhibitor Cys knot motif with three short antiparallel β-strands seen in water. However, {sup 15}N HSQC spectra of ω-Aga IVA within micelles revealed that there are radical changes to the toxin's C-terminal tail and several loops upon binding to micelles. The C-terminal tail of ω-Aga IVA appears to assume a β-turn like conformation within micelles, though it is disordered in water. Whole-cell patch clamp studies with several ω-Aga IVA analogs indicate that both the hydrophobic C-terminal tail and an Arg patch in the core region of ω-Aga IVA are critical for Cav2.1 blockade. These results suggest that the membrane environment stabilizes the structure of the toxin, enabling it to act in a manner similar to other gating modifier toxins, though its mode of interaction with the membrane and the channel is unique. - Highlights: • The NMR structure of ω-Aga IVA in DPC micelles is determined. • ω-Aga IVA stabilized its C-terminal tail with a β-turn structure within micelles. • Both the C-terminal tail and Arg patch play a crucial role for blocking Cav2.1.

60 APPLIED LIFE SCIENCES↗

Structural Comparison of Various Silkworm Silks: An Insight into the Structure–Property Relationship

Silkworm silk has attracted considerable attention in recent years due to its excellent mechanical properties, biocompatibility, and promising applications in biomedical sector. However, a clear understanding of the molecular structure and the relationship between the excellent mechanical properties and the silk protein sequences are still lacking. This study carries out a thorough comparative structural analysis of silk fibers of four silkworm species (Bombyx mori, Antheraea pernyi, Samia cynthia ricini, and Antheraea assamensis). A combination of characterization techniques including scanning electron microscopy, mechanical test, synchrotron X-ray diffraction, Fourier transform infrared spectroscopy (FTIR), and NMR spectroscopy was applied to investigate the morphologies, mechanical properties, amino acid compositions, nanoscale organizations, and molecular structures of various silkworm silks. Furthermore, the structure–property relationship is discussed by correlating the molecular structural features of silks with their mechanical properties. Here, the results show that a high content of β-sheet structures and a high crystallinity would result in a high Young’s modulus for silkworm silk fibers. Additionally, a low content of β-sheet structures would result in a high extensibility.

59 BASIC BIOLOGICAL SCIENCES↗

Chemical and Structural Effects on the Rate of Xylan Hydrolysis during Dilute Acid Pretreatment of Poplar Wood

Economic biofuel production requires high sugar yields during biomass pretreatment, however, the chemical and structural features of biomass can be obstructive toward efficient xylose hydrolysis. Here, we tested the hindrance imposed by the multiscale structure of biomass on the hydrolysis of xylan during dilute acid pretreatment by studying the effects of both the chemical nature of xylan and physical structure of biomass. Dilute acid pretreatment of poplar wood at particle sizes ranging from 10 um to 10 mm was conducted, however, no significant differences in the rates of xylan hydrolysis were observed over more than 2 orders of magnitude in particle size. A significant reduction in the rate of xylan hydrolysis was observed when compared to the intrinsic rate of hydrolysis for isolated xylan. Thus, it appears likely that the chemical structure of xylan and/or the interaction of xylan with other polymers in the cell wall matrix have greater effects on xylan hydrolysis rates than mass transfer limitations.

09 BIOMASS FUELS↗

Lattice disorder effect on magnetic ordering of iron arsenides

This study investigates magnetic ordering temperature in nano- and mesoscale structural features in an iron arsenide. Although magnetic ground states in quantum materials can be theoretically predicted from known crystal structures and chemical compositions, the ordering temperature is harder to pinpoint due to potential local lattice variations that calculations may not account for. In this work we find surprisingly that a locally disordered material can exhibit a significantly larger Néel temperature (T N ) than an ordered material of precisely the same chemical stoichiometry. Here, a EuFe 2 As 2 crystal, which is a ‘122’ parent of iron arsenide superconductors, is found through synthesis to have ordering below T N = 195 K (for the locally disordered crystal) or T N = 175 K (for the ordered crystal). In the higher T N crystals, there are shorter planar Fe-Fe bonds [2.7692(2) Å vs. 2.7745(3) Å], a randomized in-plane defect structure, and diffuse scattering along the [00 L] crystallographic direction that manifests as a rather broad specific heat peak. For the lower T N crystals, the a-lattice parameter is larger and the in-plane microscopic structure shows defect ordering along the antiphase boundaries, giving a larger T N and a higher superconducting temperature (T c ) upon the application of pressure. First-principles calculations find a strong interaction between c-axis strain and interlayer magnetic coupling, but little impact of planar strain on the magnetic order. Neutron single-crystal diffraction shows that the low-temperature magnetic phase transition due to localized Eu moments is not lattice or disorder sensitive, unlike the higher-temperature Fe sublattice ordering. This study demonstrates a higher magnetic ordering point arising from local disorder in 122.

36 MATERIALS SCIENCE↗

Beyond the staple motif: a new order at the thiolate–gold interface

Staple motifs in the form of –RS(AuSR) x – (x = 1, 2, 3, etc.) are the most common structural feature at the interface of the thiolate-protected gold nanoclusters, Au n (SR) m . However, the recently solved structure of Au 92 (SR) 44 , in which the facets of the Au 84 core are protected mainly by the bridging thiolates, challenges the staple hypothesis. Herein, we explore the surface sensitivity of the thiolate–gold interface from first principles density functional theory. We find that the interfacial structures of thiolates on gold are surface sensitive: while a staple motif (such as –RS–Au–SR–) is preferred on Au(111), a bridging motif (–RS–) is preferred on Au(100) and Au(110). We show that this surface sensitivity is closely related to the coordination number of the surface Au atom on the different surfaces. We further confirm the preference of the bridging motif for self-assembled monolayers of two different ligands (methylthiolate and 4-tert-butylbenzenethiolate) on Au(100). With this surface sensitivity, we categorize the structure-known Au n (SR) m clusters into three groups: (1) no bridging; (2) ambiguous bridging; (3) distinct bridging. We further employ the surface sensitivity of the thiolate–Au interface to predict the protecting motifs of face-centered cubic (fcc) gold nanoparticles of different shapes. In conclusion, our study provides a unifying view of the Au n (SR) m structures with guidelines for structure predictions for larger Au n (SR) m clusters of a fcc core.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Analysis of space tug operating techniques. Volume 2: Study results

The design requirements for space tug systems and cost analysis of the refurbishment phases are discussed. The vehicle is an integral propulsion stage using liquid hydrogen and liquid oxygen as propellants and is capable of operating either as a fully or a partially autonomous vehicle. Structural features are an integral liquid hydrogen tank, a liquid oxygen tank, a meteoroid shield, an aft conical docking and structural support ring, and a staged combustion main engine. The vehicle is constructed of major modules for ease of maintenance. Line drawings and block diagrams are included to explain the maintenance requirements for the subsystems.

Source record↗

Soil moisture in relation to geologic structure and lithology, northern California

The author has identified the following significant results. Structural features in the Norther California Coast Ranges are clearly discernable on Nite-IR images and some of the structural linears may results in an extension of known faults within the region. The Late Mesozoic marine sedimentary rocks along the western margin of the Sacramento Valley are clearly defined on the Nite-IR images and in a gross way individual layers of sandstone can be differentiated from shale. Late Pleistocene alluvial fans are clearly differentiated from second generation Holocene fans on the basis of tonal characteristics. Although the tonal characteristics change with the seasons, the differentiation of the two sets of fans is still possible.

Rich, E. I.↗

High temperature arc-track resistant aerospace insulation

The topics are presented in viewgraph form and include the following: high temperature aerospace insulation; Foster-Miller approach to develop a 300 C rated, arc-track resistant aerospace insulation; advantages and disadvantages of key structural features; summary goals and achievements of the phase 1 program; performance goals for selected materials; materials under evaluation; molecular structures of candidate polymers; candidate polymer properties; film properties; and a detailed program plan.

Dorogy, William↗

Honeycomb vs. Foam: Evaluating Potential Upgrades to ISS Module Shielding

The presence of honeycomb cells in a dual-wall structure is advantageous for mechanical performance and low weight in spacecraft primary structures but detrimental for shielding against impact of micrometeoroid and orbital debris particles (MMOD). The presence of honeycomb cell walls acts to restrict the expansion of projectile and bumper fragments, resulting in the impact of a more concentrated (and thus lethal) fragment cloud upon the shield rear wall. The Multipurpose Laboratory Module (MLM) is a Russian research module scheduled for launch and ISS assembly in 2011 (currently under review). Baseline shielding of the MLM is expected to be predominantly similar to that of the existing Functional Energy Block (FGB), utilizing a baseline triple wall configuration with honeycomb sandwich panels for the dual bumpers and a thick monolithic aluminum pressure wall. The MLM module is to be docked to the nadir port of the Zvezda service module and, as such, is subject to higher debris flux than the FGB module (which is aligned along the ISS flight vector). Without upgrades to inherited shielding, the MLM penetration risk is expected to be significantly higher than that of the FGB module. Open-cell foam represents a promising alternative to honeycomb as a sandwich panel core material in spacecraft primary structures as it provides comparable mechanical performance with a minimal increase in weight while avoiding structural features (i.e. channeling cells) detrimental to MMOD shielding performance. In this study, the effect of replacing honeycomb sandwich panel structures with metallic open-cell foam structures on MMOD shielding performance is assessed for an MLM-representative configuration. A number of hypervelocity impact tests have been performed on both the baseline honeycomb configuration and upgraded foam configuration, and differences in target damage, failure limits, and derived ballistic limit equations are discussed.

Ryan, Shannon J.↗

Evolution of low-lying M1 modes in germanium isotopes

Magnetic dipole strength functions are determined for the series of germanium isotopes from N=Z=32 to N = 48 on the basis of a large number of transition strengths calculated within the shell model. The evolution of the strength with increasing neutron number in the 1g 9/2 orbital is analyzed. A bimodal structure comprising an enhancement toward low transition energy and a resonance in the region of the scissors mode is identified. The low-energy enhancement is strongest near closed shells, in particular at the almost completely filled 1g 9/2 orbital, while the scissorslike resonance is most pronounced in the middle of the open shell, which correlates with the magnitude of the also deduced electric quadrupole transition strengths. The results are consistent with previous findings for the shorter series of iron isotopes and prove the occurrence and correlation of the two low-lying magnetic dipole modes as a global structural feature.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Data-driven surrogates for high dimensional models using Gaussian process regression on the Grassmann manifold

This paper introduces a surrogate modeling scheme based on Grassmannian manifold learning to be used for cost-efficient predictions of high-dimensional stochastic systems. The method exploits subspace-structured features of each solution by projecting it onto a Grassmann manifold. This point-wise linear dimensionality reduction harnesses the structural information to assess the similarity between solutions at different points in the input parameter space. The method utilizes a solution clustering approach in order to identify regions of the parameter space over which solutions are sufficiently similarly such that they can be interpolated on the Grassmannian. In this clustering, the reduced-order solutions are partitioned into disjoint clusters on the Grassmann manifold using the eigen-structure of properly defined Grassmannian kernels and, the Karcher mean of each cluster is estimated. Then, the points in each cluster are projected onto the tangent space with origin at the corresponding Karcher mean using the exponential mapping. For each cluster, a Gaussian process regression model is trained that maps the input parameters of the system to the reduced solution points of the corresponding cluster projected onto the tangent space. Using this Gaussian process model, the full-field solution can be efficiently predicted at any new point in the parameter space. In certain cases, the solution clusters will span disjoint regions of the parameter space. In such cases, for each of the solution clusters we utilize a second, density-based spatial clustering to group their corresponding input parameter points in the Euclidean space. The proposed method is applied to two numerical examples. Here, the first is a nonlinear stochastic ordinary differential equation with uncertain initial conditions where the surrogate is used to predict the time history solution. The second involves modeling of plastic deformation in a model amorphous solid using the Shear Transformation Zone theory of plasticity, where the proposed surrogate is used to predict the full strain field of a material specimen under large shear strains.

42 ENGINEERING↗

Decomposition of CoF 3 during battery electrode processing

Metal fluorides are potential candidates as electrode materials for rechargeable batteries. During the electrode fabrication, however, thermal treatments can cause decomposition of thermally instable compounds. For this study, we showed that during the electrode processing of CoF 3 , the carbon and PVDF additives act as a protective layer that prevents CoF 3 to readily decompose into CoF 2 (rutile). We found that instead, it decomposes into an intermediate phase with a corundum like structure featuring Co vacancies, i.e., Co 1.26 II Co 0.16 III $\square$ 0.58 F 3 where $\square$ represents the vacancies. The structural analysis was possible owing to the use of the pair distribution function.

25 ENERGY STORAGE↗

Structures of Pseudomonas aeruginosa LpxA Reveal the Basis for Its Substrate Selectivity

In Gram-negative bacteria, the first step of lipid A biosynthesis is catalyzed by UDP-N-acetylglucosamine acyltransferase (LpxA) through the transfer of a R-3-hydroxyacyl chain from the acyl carrier protein (ACP) to the 3-hydroxyl group of UDP-GlcNAc. Previous studies suggest that LpxA is a critical determinant of the acyl chain length found in lipid A, which varies among species of bacteria. In Escherichia coli and Leptospira interrogans, LpxA prefers to incorporate longer R-3-hydroxyacyl chains (C14 and C12, respectively), whereas in Pseudomonas aeruginosa, the enzyme is selective for R-3-hydroxydecanoyl, a 10-hydrocarbon long acyl chain. We now report three P. aeruginosa LpxA crystal structures: apo protein, substrate complex with UDP-GlcNAc, and product complex with UDP-3-O-(R-3-hydroxydecanoyl)-GlcNAc. A comparison between the apo form and complexes identifies key residues that position UDP-GlcNAc appropriately for catalysis and supports the role of catalytic His121 in activating the UDP-GlcNAc 3-hydroxyl group for nucleophilic attack during the reaction. Here, the product-complex structure, for the first time, offers structural insights into how Met169 serves to constrain the length of the acyl chain and thus functions as the so-called hydrocarbon ruler. Furthermore, compared with ortholog LpxA structures, the purported oxyanion hole, formed by the backbone amide group of Gly139, displays a different conformation in P. aeruginosa LpxA, which suggests flexibility of this structural feature important for catalysis and the potential need for substrate-induced conformational change in catalysis. Taken together, the three structures provide valuable insights into P. aeruginosa LpxA catalysis and substrate specificity as well as templates for future inhibitor discovery.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Layered Structures and Disordered Polyanionic Nets in the Cation-Poor Polar Intermetallics CsAu 1.4 Ga 2.8 and CsAu 2 Ga 2.6

Gold intermetallics are known for their unusual structures and bonding patterns. Two new compounds have been discovered in the cation-poor part of the Cs–Au–Ga system. We obtained both compounds directly by heating the elements at elevated temperatures. Structure determinations based on single-crystal X-ray diffraction analyses revealed two structurally and compositionally related formations: CsAu 1.4 Ga 2.8 (I) and CsAu 2 Ga 2.6 (II) crystallize in their own structure types (I: R$\bar{3}$, a = 11.160(2) Å, c = 21.706(4) Å, Z = 18; II: R$\bar{3}$, a = 11.106(1) Å, Å, c = 77.243(9) Å, Z = 54) and contain hexagonal cationic layers of cesium. Furthermore, this is a unique structural motif, which has never been observed for the other (lighter) alkali metals in combination with Au and post transition elements. The polyanionic part is characterized in contrast by Au/Ga tetrahedral stars, a structural feature that is characteristic for light alkali metal representatives, and disordered sites with mixed Au/Ga occupancies that occur in both structures with a more significant disorder in the polyanionic component of CsAu 2 Ga 2.6 . Examinations of the electronic band structure for a model approximating the composition of CsAu 1.4 Ga 2.8 have been completed using density-functional-theory-based methods and reveal a deep pseudogap at E F . Bonding analysis by evaluating the crystal orbital Hamilton populations show dominant heteroatomic Au–Ga bonds and only a negligible contribution from Cs pairs.

36 MATERIALS SCIENCE↗

A Critical Review of Existing Criteria for the Prediction of Pyrochlore Formation and Stability

Depending on intrinsic (e.g., radius ratio rule r Ln / r Zr ) and extrinsic factors (e.g., processing conditions), pyrochlore-type Ln 2 Zr 2 O 7 oxides achieve variable degrees of structural disorder. In this paper we report on a systematic study of the structural and microstructural characteristics of the Gd 2– x Ln x Zr 2 O 7 system, exploring the effect of replacing Gd with a wide range of homovalent lanthanide ions (Ln = Nd, Sm, Dy, Ho, Y, and Er; x = 0.20 and 0.80). All compositions were prepared via a mechanochemical reaction between the corresponding oxides and characterized by X-ray diffraction (standard and synchrotron sources) using the Rietveld method, as well as by Raman spectroscopy. Irrespective of chemical composition, this study reveals that all compositions exhibit a fluorite-like structure. Furthermore, by firing each sample at 800 and 1400 °C, we are able to analyze the transition to pyrochlore-like structures, featuring different degrees of disorder, in all but Gd 1.20 Y 0.80 Zr 2 O 7 , which retains the fluorite structure even after heating. The structural data are used to assess the existing criteria for predicting the formation and stability of the pyrochlore structure; according to this analysis, the simple radius ratio rule ( r Ln / r Zr ), provides a useful and sufficiently robust criterion. Because the pyrochlore structure has a strong tendency to disorder, it is not possible to define an empirical index similar to the Goldschmidt tolerance factor for perovskite.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Exploring Structural Diversity and Fluxionality of Pt n ( n = 10–13) Clusters from First-Principles

Subnanometer transition-metal clusters have been shown to possess catalytic activity that is size-dependent. It has been suggested that the fluxionality of these small clusters may be closely related to their catalytic activity. Here we use basin-hopping global optimization with density functional theory (DFT) to study the energy landscape of Ptn (n = 10–13) clusters. We analyze a large set of local minima obtained from the DFT-based global optimization. We find that Pt10 is unique with respect to the other studied sizes in its structural landscape, which shows a single, distinct structural motif corresponding to a tetrahedral global minimum. In contrast, Pt11–13 all display characteristics of high fluxionality with the presence of multiple significantly differing structural features in the low-energy region, as characterized by coordination number, interatomic distances, and shape. These observations demonstrate the structural diversity and fluxionality of the subnanometer Pt clusters that will have important implications for catalysis.

Fung, Victor↗

HyMARC Seedling: Optimized Hydrogen Adsorbents via Machine Learning and Crystal Engineering

This final report is presented in two parts: In Part 1, the H 2 capacities of a diverse set of 918,734 metal-organic frameworks (MOFs) sourced from 19 databases is predicted via machine learning (ML). Using only 7 structural features as input, ML identifies 8,282 MOFs with the potential to exceed the capacities of state-of-the-art materials. The identified MOFs are predominantly hypothetical compounds having low densities (<0.31 g/cm3) in combination with high surface areas (>5,300 m2/g), void fractions ($0.90), and pore volumes (>3.3 cm3/g). The relative importance of the input features are characterized, and dependencies on the ML algorithm and training set size are quantified. The most important features for predicting H 2 uptake are pore volume (for gravimetric capacity) and void fraction (for volumetric capacity). The ML models are available on the web, allowing for rapid and accurate predictions of the hydrogen capacities of MOFs from limited structural data; the simplest models require only a single crystallographic feature. In part 2, ways to improve the poor powder packing density of MOFs is discussed. More specifically, a strategy that improves packing efficiency and volumetric hydrogen gas storage density dramatically through engineered morphologies and controlled-crystal size distributions is presented that holds promise for maximizing storage capacity for a given MOF. The packing density improvement, demonstrated for the benchmark sorbent MOF-5, leads to a significant enhancement of volumetric hydrogen storage performance relative to commercial MOF-5. System model projections demonstrate that engineering of crystal morphology/size or use of a bimodal distribution of cubic crystal sizes in tandem with system optimization can surpass the 25 g/L volumetric capacity of a typical 700 bar compressed storage system and exceed the DOE targets 2020 volumetric capacity (30 g/L). Finally, a critical link between improved powder packing density and reduced damage upon compaction is revealed leading to sorbents with both high surface area and high density.

08 HYDROGEN↗

Functionalization of Single-walled Carbon Nanotubes with Thermo-reversible Block Copolymers and Characterization by Small-angle Neutron Scattering

We demonstrate a protocol for single-walled carbon nanotube functionalization using thermo-sensitive PEO-PPO-PEO triblock copolymers in an aqueous solution In a carbon nanotube/PEO105-PPO70-PEO105 (poloxamer 407) aqueous solution, the amphiphilic poloxamer 407 adsorbs onto the carbon nanotube surfaces and self-assembles into continuous layers, driven by intermolecular interactions between constituent molecules. The addition of 5-methylsalicylic acid changes the self-assembled structure from spherical-micellar to a cylindrical morphology. The fabricated poloxamer 407/carbon nanotube hybrid particles exhibit thermo-responsive structural features so that the density and thickness of poloxamer 407 layers are also reversibly controllable by varying temperature. The detailed structural properties of the poloxamer 407/carbon nanotube particles in suspension can be characterized by small-angle neutron scattering experiments and model fit analyses. The distinct curve shapes of the scattering intensities depending on temperature control or addition of aromatic additives are well described by a modified core-shell cylinder model consisting of a carbon nanotube core cylinder, a hydrophobic shell, and a hydrated polymer layer. In conclusion, this method can provide a simple but efficient way for the fabrication and in-situ characterization of carbon nanotube-based nano particles with a structure-tunable encapsulation.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗