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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 415 records · Page 23
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells

Protein analysis of small numbers of human cells is primarily achieved by targeted proteomics with antibody-based immunoassays, which have inherent limitations (e.g., low multiplex and unavailability of antibodies for new proteins). Mass spectrometry (MS)-based targeted proteomics has emerged as an alternative because it is antibody-free, high multiplex, and has high specificity and quantitation accuracy. Recent advances in MS instrumentation make MS-based targeted proteomics possible for multiplexed quantification of highly abundant proteins in single cells. However, there is a technical challenge for effective processing of single cells with minimal sample loss for MS analysis. To address this issue, we have recently developed a convenient protein carrier-assisted one-pot sample preparation coupled with liquid chromatography (LC) - selected reaction monitoring (SRM) termed cLC-SRM for targeted proteomics analysis of small numbers of human cells. This method capitalizes on using the combined excessive exogenous protein as a carrier and low-volume one-pot processing to greatly reduce surface adsorption losses as well as high-specificity LC-SRM to effectively address the increased dynamic concentration range due to the addition of exogeneous carrier protein. Its utility has been demonstrated by accurate quantification of most moderately abundant proteins in small numbers of cells (e.g., 10-100 cells) and highly abundant proteins in single cells. The easy-to-implement features and no need for specific devices make this method readily accessible to most proteomics laboratories. In this study, we have provided a detailed protocol for cLC-SRM analysis of small numbers of human cells including cell sorting, cell lysis and digestion, LC-SRM analysis, and data analysis. Further improvements in detection sensitivity and sample throughput are needed towards targeted single-cell proteomics analysis. We anticipate that cLC-SRM will be broadly applied to biomedical research and systems biology with the potential of facilitating precision medicine.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Emission-line Data Cubes of the HH 32 Stellar Jet

We analyze data cubes of over 60 emission lines in the HH 32 stellar jet acquired with the Keck Cosmic Web Imager (KCWI). The data cover the less explored blue portion of the spectrum between 3586 and 6351 Å and have both high spectral (R ∼ 10,000) and spatial (≲1″) resolution. The study includes all three major ionization states of oxygen, three Balmer lines, multiple lines of Fe ii and Fe iii, and the first data cubes ever acquired for important unblended diagnostic lines such as He ii λ4686, Ca i λ3933, and Mg i] λ4571. The data cubes generally sort according to excitation and have a relatively continuous progression from the highest-excitation ions (He ii, O iii) through the intermediate-excitation ions (O i and H i) to the lowest-excitation ions (Ca ii and Mg i). Merging the KCWI cubes with Hubble Space Telescope images leads to several new insights about the flow, including evidence for bow shocks, partial bow shocks, spur shocks, Mach disks, jet deflection shocks, a wiggling jet, and potential shock precursors. The most surprising result is that one of the velocity components of Fe ii in the Mach disk suddenly increases in flux relative to other lines by a factor of two, implying that the Mach disk vaporizes dust in the jet. Hence, jets must accelerate or entrain dust to speeds of over 300 km s{sup −1} without destroying the grains.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Expediting DECam Multimessenger Counterpart Searches with Convolutional Neural Networks

Searches for counterparts to multimessenger events with optical imagers use difference imaging to detect new transient sources. However, even with existing artifact-detection algorithms, this process simultaneously returns several classes of false positives: false detections from poor-quality image subtractions, false detections from low signal-to-noise images, and detections of preexisting variable sources. Currently, human visual inspection to remove the false positives is a central part of multimessenger follow-up observations, but when next generation gravitational wave and neutrino detectors come online and increase the rate of multimessenger events, the visual inspection process will be prohibitively expensive. We approach this problem with two convolutional neural networks operating on the difference imaging outputs. The first network focuses on removing false detections and demonstrates an accuracy of 92% on our data set. The second network focuses on sorting all real detections by the probability of being a transient source within a host galaxy and distinguishes between various classes of images that previously required additional human inspection. We find the number of images requiring human inspection will decrease by a factor of 1.5 using our approach alone and a factor of 3.6 using our approach in combination with existing algorithms, facilitating rapid multimessenger counterpart identification by the astronomical community.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2024

An Excess of AGNs Triggered by Galaxy Mergers in MaNGA Galaxies of Stellar Mass $\sim10^{11}$$M_{\odot}$

To facilitate new studies of galaxy merger driven fueling of active galactic nuclei (AGNs), we present a catalog of 387 AGNs that we have identified in the final population of over $10,000$$z<0.15$ galaxies observed by the SDSS-IV integral field spectroscopy survey Mapping Nearby Galaxies at Apache Point Observatory (MaNGA). We selected the AGNs via mid-infrared WISE colors, Swift/BAT ultra hard X-ray detections, NVSS and FIRST radio observations, and broad emission lines in SDSS spectra. By combining the MaNGA AGN catalog with a new SDSS catalog of galaxy mergers that were identified based on a suite of hydrodynamical simulations of merging galaxies, we study the link between galaxy mergers and nuclear activity for AGNs above a limiting bolometric luminosity of $10^{44.4}$ erg s$^{-1}$. We find an excess of AGNs in mergers, relative to non-mergers, for galaxies with stellar mass $\sim10^{11}$$M_{\odot}$, where the AGN excess is somewhat stronger in major mergers than in minor mergers. Further, when we combine minor and major mergers and sort by merger stage, we find that the highest AGN excess occurs in post-coalescence mergers in the highest mass galaxies. However, we find no evidence of a correlation between galaxy mergers and AGN luminosity or accretion rate. In summary, while galaxy mergers overall do appear to trigger or enhance AGN activity more than non-mergers, they do not seem to induce higher levels of accretion or higher luminosities. We provide the MaNGA AGN Catalog and the MaNGA Galaxy Merger Catalog for the community here.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Testing the Cosmological Principle: Astrometric Limits on Systemic Motion of Quasars at Different Cosmological Epochs

A sample of 60,410 bona fide optical quasars with astrometric proper motions in Gaia Early Data Release 3 and spectroscopic redshifts above 0.5 in an oval 8400 square degree area of the sky is constructed. Using orthogonal Zernike functions of polar coordinates, the proper motion fields are fitted in a weighted least-squares adjustment of the entire sample and of six equal bins of sorted redshifts. The overall fit with 37 Zernike functions reveals a statistically significant pattern, which is likely to be of instrumental origin. The main feature of this pattern is a chain of peaks and dips mostly in the R.A. component with an amplitude of 25 μ as yr -1 . This field is subtracted from each of the six analogous fits for quasars grouped by redshifts covering the range 0.5 through 7.03, with median values of 0.72, 1.00, 1.25, 1.52, 1.83, 2.34. The resulting residual patterns are noisier, with formal uncertainties up to 8 μ as yr -1 in the central part of the area. We detect a single high-confidence Zernike term for the R.A. proper motion components of quasars with redshifts around 1.52 representing a general gradient of 30 μ as yr -1 over 150° on the sky. We do not find any small- or medium-scale systemic variations of the residual proper motion field as functions of redshift above the 2.5 σ significance level.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Planetesimal Impact Vapor Plumes and Nebular Shocks Form Chondritic Mixtures

The origin of chondrules and the chondritic sedimentary rocks that dominate the meteoritic record is a long-standing problem in planetary science. Here, we develop a physical model for the formation of chondritic mixtures as an outcome of vaporizing collisions between planetesimals that were dynamically excited by the growth and migration of planets. We present calculations of nebular shock waves generated by impact vapor plumes and focus on aspects of the plume interaction with the nebular gas and dust that have been neglected in previous studies of impact ejecta. We find that when water dominates the vapor, the plumes are relatively cool. However, the plume expansion is supersonic and can drive strong shock waves in the dusty nebular gas. Portions of these nebular shock fronts initially melt nebular dust, forming chondrules that are coupled to the moving front. As the shock front expands and cools, the chondrules solidify, while the shock front entrains additional dust. Eventually, the plume expansion stalls and then hydrodynamically collapses, turbulently mixing variably processed dust and size-sorted chondrules. For probable impact parameters and nebular conditions during giant planet growth and migration, the impact-generated mixtures have characteristics that span the range observed in chondritic meteorites, providing an environment for rapid formation of chondritic assemblages after chondrule formation. Our impact vapor and nebular shocks model, named the IVANS model, links chondrule formation to the overall context of planet formation and provides a framework for interpreting the detailed chronological and geochemical record contained in chondritic meteorites.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Measurement of transverse single-spin asymmetries for dijet production in polarized proton-proton collisions at √s = 200 GeV

We report a new measurement of transverse single-spin asymmetries for dijet production in collisions of polarized protons at √ s = 200 GeV. Possible correlations between the proton spin and the transverse momenta of its partons, mutually orthogonal, with each perpendicular to the proton momentum direction, are probed at high Q 2 ≈160 GeV 2 . The associated Sivers observable ${\langle}k_T{\rangle}$, the average parton transverse momentum, is extracted using simple kinematics. Nonzero Sivers effects are observed for the first time in proton-proton collisions, but only when the jets are sorted by their net charge, which enhances the u- or d-quark contributions to separate data samples. This also enables a determination of the individual partonic contributions to the observed asymmetries.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Environmental sensitivities of shallow-cumulus dilution – Part 1: Selected thermodynamic conditions

Cumulus entrainment, and its consequent dilution of buoyant cloud cores, strongly regulates the life cycle of shallow cumuli yet remains poorly understood. Herein, new insights into this problem are obtained through large-eddy simulations that systematically investigate the sensitivity of shallow-cumulus dilution to cloud-layer relative humidity (RH), cloud- and subcloud-layer depths, and continentality (i.e., the land–ocean contrast). The simulated cloud-core dilution is found to be strongly sensitive to continentality, with fractional dilution rates twice as large over the ocean as over land. Using a similarity theory based on the turbulent-kinetic-energy (TKE) budget, the reduced cloud-core dilution over land is attributed to larger cloud-base mass flux (mb), driven by stronger surface heating and subcloud turbulence. As mb increases, the fractional dilution rate must decrease to maintain energetic equilibrium. A positive sensitivity is also found to cloud-layer RH, with the core dilution increasing by 25 %–50 % for a 10 % enhancement in RH. This sensitivity is interpreted using the buoyancy-sorting hypothesis, in that mixtures of cloud and environmental air are more likely to become negatively buoyant and detrain (rather than diluting the cloud core) in drier cloud layers. By contrast, the sensitivities of (marine) shallow-cumulus dilution to cloud- and subcloud-layer depths are weak, with a 3 % decrease for a doubling for the former and a 4 % reduction in dilution for a 50 % deeper subcloud layer. These surprisingly weak sensitivities are readily explained by offsetting effects in the TKE similarity theory. Altogether, these experimental findings provide useful, though still incomplete, guidance for flow-dependent shallow-cumulus entrainment formulations in large-scale models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

A robust clustering algorithm for analysis of composition-dependent organic aerosol thermal desorption measurements

Abstract. One of the challenges of understanding atmospheric organic aerosol (OA) particles stems from its complex composition. Mass spectrometry is commonly used to characterize the compositional variability of OA. Clustering of a mass spectral dataset helps identify components that exhibit similar behavior or have similar properties, facilitating understanding of sources and processes that govern compositional variability. Here, we developed an algorithm for clustering mass spectra, the noise-sorted scanning clustering (NSSC), appropriate for application to thermal desorption measurements of collected OA particles from the Filter Inlet for Gases and AEROsols coupled to a chemical ionization mass spectrometer (FIGAERO-CIMS). NSSC, which extends the common density-based special clustering of applications with noise (DBSCAN) algorithm, provides a robust, reproducible analysis of the FIGAERO temperature-dependent mass spectral data. The NSSC allows for the determination of thermal profiles for compositionally distinct clusters of mass spectra, increasing the accessibility and enhancing the interpretation of FIGAERO data. Applications of NSSC to several laboratory biogenic secondary organic aerosol (BSOA) systems demonstrate the ability of NSSC to distinguish different types of thermal behaviors for the components comprising the particles along with the relative mass contributions and chemical properties (e.g., average molecular formula) of each mass spectral cluster. For each of the systems examined, more than 80 % of the total mass is clustered into 9–13 mass spectral clusters. Comparison of the average thermograms of the mass spectral clusters between systems indicates some commonality in terms of the thermal properties of different BSOA, although with some system-specific behavior. Application of NSSC to sets of experiments in which one experimental parameter, such as the concentration of NO, is varied demonstrates the potential for mass spectral clustering to elucidate the chemical factors that drive changes in the thermal properties of OA particles. Further quantitative interpretation of the thermograms of the mass spectral clusters will allow for a more comprehensive understanding of the thermochemical properties of OA particles.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Cloud drop number concentrations over the western North Atlantic Ocean: seasonal cycle, aerosol interrelationships, and other influential factors

Cloud drop number concentrations (N d ) over the western North Atlantic Ocean (WNAO) are generally highest during the winter (DJF) and lowest in summer (JJA), in contrast to aerosol proxy variables (aerosoloptical depth, aerosol index, surface aerosol mass concentrations, surface cloud condensation nuclei (CCN) concentrations) that generally peak inspring (MAM) and JJA with minima in DJF. Using aircraft, satellite remote sensing, ground-based in situ measurement data, and reanalysis data, we characterize factors explaining the divergent seasonal cycles and furthermore probe into factors influencing N d on seasonal timescales. The results can be summarized well by features most pronounced in DJF, including features associated with cold-air outbreak (CAO) conditions such as enhanced values of CAO index, planetary boundary layer height (PBLH),low-level liquid cloud fraction, and cloud-top height, in addition to winds aligned with continental outflow. Data sorted into high- and low-N d days in each season, especially in DJF, revealed that all of these conditions were enhanced on the high-N d days, including reduced sea level pressure and stronger wind speeds. Although aerosols may be more abundant in MAM and JJA, the conditions needed to activate those particles into cloud droplets are weaker than in colder months, which is demonstrated by calculations of the strongest (weakest) aerosol indirect effects in DJF (JJA) based on comparing N d to perturbations in four different aerosol proxy variables (total and sulfate aerosol optical depth, aerosol index, surface mass concentration of sulfate). We used three machine learning models and up to 14 input variables to infer about most influential factors related to N d for DJF and JJA, with the best performance obtained with gradient-boosted regression tree (GBRT) analysis. The model results indicated that cloud fraction was the most important input variable, followed by some combination (depending on season) of CAO index and surface mass concentrations of sulfate and organic carbon. Future work is recommended to further understand aspects uncovered here such as impacts of free tropospheric aerosol entrainment on clouds, degree of boundary layer coupling, wet scavenging, and giant CCN effects on aerosol–N d relationships, updraft velocity, and vertical structure of cloud properties such as adiabaticity that impact the satellite estimation of N d .

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Distinct regional meteorological influences on low-cloud albedo susceptibility over global marine stratocumulus regions

Abstract. Marine stratocumuli cool the Earth effectively due to their high reflectance of incoming solar radiation and persistent occurrence. The susceptibility of cloud albedo to droplet number concentration perturbations depends strongly on large-scale meteorological conditions. Studies focused on the meteorological dependence of cloud adjustments often overlook the covariability among meteorological factors and their geographical and temporal variability. We use 8 years of satellite observations sorted by day and geographical location to show the global distribution of marine low-cloud albedo susceptibility. We find an overall cloud brightening potential for most marine warm clouds, which is more pronounced over subtropical coastal regions. A weak cloud darkening potential in the annual mean is evident over the remote SE Pacific and SE Atlantic. We show that large-scale meteorological fields from the ERA5 reanalysis data, including lower-tropospheric stability, free-tropospheric relative humidity, sea surface temperature, and boundary layer depth, have distinct covariabilities over each of the eastern subtropical ocean basins where marine stratocumuli prevail. This leads to a markedly different annual cycle in albedo susceptibility over each basin. Moreover, we find that basin-specific regional relationships between key meteorological factors and albedo susceptibilities are absent in a global analysis. Our results stress the importance of considering the geographical distinctiveness of temporal meteorological covariability when scaling up the local-to-global response of cloud albedo to aerosol perturbations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Benchmarking and parameter sensitivity of physiological and vegetation dynamics using the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) at Barro Colorado Island, Panama

Plant functional traits determine vegetation responses to environmental variation, but variation in trait values is large, even within a single site. Likewise, uncertainty in how these traits map to Earth system feedbacks is large. We use a vegetation demographic model (VDM), the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), to explore parameter sensitivity of model predictions, and comparison to observations, at a tropical forest site: Barro Colorado Island in Panama. We define a single 12-dimensional distribution of plant trait variation, derived primarily from observations in Panama, and define plant functional types (PFTs) as random draws from this distribution. We compare several model ensembles, where individual ensemble members vary only in the plant traits that define PFTs, and separate ensembles differ from each other based on either model structural assumptions or non-trait, ecosystem-level parameters, which include (a) the number of competing PFTs present in any simulation and (b) parameters that govern disturbance and height-based light competition. While single-PFT simulations are roughly consistent with observations of productivity at Barro Colorado Island, increasing the number of competing PFTs strongly shifts model predictions towards higher productivity and biomass forests. Different ecosystem variables show greater sensitivity than others to the number of competing PFTs, with the predictions that are most dominated by large trees, such as biomass, being the most sensitive. Changing disturbance and height-sorting parameters, i.e., the rules of competitive trait filtering, shifts regimes of dominance or coexistence between early- and late-successional PFTs in the model. Increases to the extent or severity of disturbance, or to the degree of determinism in height-based light competition, all act to shift the community towards early-successional PFTs. In turn, these shifts in competitive outcomes alter predictions of ecosystem states and fluxes, with more early-successional-dominated forests having lower biomass. It is thus crucial to differentiate between plant traits, which are under competitive pressure in VDMs, from those model parameters that are not and to better understand the relationships between these two types of model parameters to quantify sources of uncertainty in VDMs.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Evaluation of a quasi-steady-state approximation of the cloud droplet growth equation (QDGE) scheme for aerosol activation in global models using multiple aircraft data over both continental and marine environments

This research introduces a numerically efficient aerosol activation scheme and evaluates it by using stratus and stratocumulus cloud data sampled during multiple aircraft campaigns in Canada, Chile, Brazil, and China. The scheme employs a quasi-steady-state approximation of the cloud droplet growth equation (QDGE) to efficiently simulate aerosol activation, the vertical profile of supersaturation, and the activated cloud droplet number concentration (CDNC) near the cloud base. The calculated maximum supersaturation values using the QDGE scheme were compared with multiple parcel model simulations under various aerosol and environmental conditions. The differences are all below 0.18 %, indicating good performance and accuracy of the QDGE scheme. We evaluated the QDGE scheme by specifying observed environmental thermodynamic variables and aerosol information from 31 cloud cases as input and comparing the simulated CDNC with cloud observations. The average of mean relative error ($\overline{MRE}$) of the simulated CDNC for cloud cases in each campaign ranges from 17.30 % in Brazil to 25.90 % in China, indicating that the QDGE scheme successfully reproduces observed variations in CDNC over a wide range of different meteorological conditions and aerosol regimes. Additionally, we carried out an error analysis by calculating the maximum information coefficient (MIC) between the MRE and input variables for the individual campaigns and all cloud cases. MIC values were then sorted by aerosol properties, pollution level, environmental humidity, and dynamic condition according to their relative importance to MRE. Based on the error analysis, we found that the magnitude of MRE is more relevant to the specification of input aerosol pollution level in marine regions and aerosol hygroscopicity in continental regions than to other variables in the simulation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Pythia8 Quark and Gluon Jets (float32)

A float32 (single-precision) version of the quark and gluon jet dataset originally published by Komiske, Metodiev, and Thaler (Zenodo record 3164691). Only the 20-file subset without charm and bottom quark jets is included here. All simulation parameters and jet selection criteria are identical to the original: Pythia 8.226, √s = 14 TeV Quarks from WeakBosonAndParton:qg2gmZq, gluons from WeakBosonAndParton:qqbar2gmZg with the Z decaying to neutrinos FastJet 3.3.0, anti-k_t jets with R = 0.4 p_T^jet ∈ [500, 550] GeV, |y^jet| < 1.7 There are 20 files, each in compressed NumPy format (QG_jets_fp32_0.npz through QG_jets_fp32_19.npz). Each file contains two arrays: X: (100000, M, 4) — 50k quark and 50k gluon jets, randomly sorted, padded to max multiplicity M, with particle features (pt, rapidity, azimuthal angle, pdgid) stored as float32 y: (100000,) — jet labels, gluon = 0, quark = 1 The original dataset stores X in float64. Here X has been cast to float32, approximately halving file size. The y labels are unchanged. If you use this dataset, please cite the original Zenodo record and its associated paper: Komiske, Metodiev, Thaler, Energy Flow Networks: Deep Sets for Particle Jets, JHEP 01 (2019) 121, arXiv:1810.05165

energyflow↗
DOE OSTI2026

Pythia8 Quark and Gluon Jets (float16)

A float16 (half-precision) version of the quark and gluon jet dataset originally published by Komiske, Metodiev, and Thaler (Zenodo record 3164691). Only the 20-file subset without charm and bottom quark jets is included here. All simulation parameters and jet selection criteria are identical to the original: Pythia 8.226, √s = 14 TeV Quarks from WeakBosonAndParton:qg2gmZq, gluons from WeakBosonAndParton:qqbar2gmZg with the Z decaying to neutrinos FastJet 3.3.0, anti-k_t jets with R = 0.4 p_T^jet ∈ [500, 550] GeV, |y^jet| < 1.7 There are 20 files, each in compressed NumPy format (QG_jets_fp32_0.npz through QG_jets_fp32_19.npz). Each file contains two arrays: X: (100000, M, 4) — 50k quark and 50k gluon jets, randomly sorted, padded to max multiplicity M, with particle features (pt, rapidity, azimuthal angle, pdgid) stored as float32 y: (100000,) — jet labels, gluon = 0, quark = 1 The original dataset stores X in float64. Here X has been cast to float16, approximately halving file size. The y labels are unchanged. Users should be aware that float16 has limited dynamic range and precision. If you use this dataset, please cite the original Zenodo record and its associated paper: Komiske, Metodiev, Thaler, Energy Flow Networks: Deep Sets for Particle Jets, JHEP 01 (2019) 121, arXiv:1810.05165

energyflow↗
DOE OSTI2026

Pythia8 Quark and Gluon Jets (float8 e4m3FN)

A float8 (e4m3FN) quantized version of the quark and gluon jet dataset originally published by Komiske, Metodiev, and Thaler (Zenodo record 3164691). Only the 20-file subset without charm and bottom quark jets is included here. All simulation parameters and jet selection criteria are identical to the original: Pythia 8.226, √s = 14 TeV Quarks from WeakBosonAndParton:qg2gmZq, gluons from WeakBosonAndParton:qqbar2gmZg with the Z decaying to neutrinos FastJet 3.3.0, anti-k_t jets with R = 0.4 p_T^jet ∈ [500, 550] GeV, |y^jet| < 1.7 There are 20 files, each in compressed NumPy format (QG_jets_fp8e4m3fn_0.npz through QG_jets_fp8e4m3fn_19.npz). Each file contains two arrays: X: (100000, M, 4) — 50k quark and 50k gluon jets, randomly sorted, padded to max multiplicity M, with particle features (pt, rapidity, azimuthal angle, pdgid) y: (100000,) — jet labels, gluon = 0, quark = 1 Since NumPy has no native fp8 dtype, X is stored as float32, but the values have been quantized through TensorFlow's float8_e4m3fn type and carry only fp8 precision. The quantization procedure is as follows: a global per-channel scale factor is computed from the absolute maximum value across all 20 chunks (with FP8_MAX = 448.0, the maximum representable value of e4m3FN). Each chunk is then scaled into the fp8 dynamic range, round-tripped through tf.experimental.float8_e4m3fn, and scaled back. This global scaling ensures a consistent quantization grid across the full dataset. The y labels are unchanged. Users should be aware that e4m3FN has limited dynamic range and precision. We recommend verifying this format is appropriate for your application; for a less aggressive reduction see the float16 and float32 versions linked below. If you use this dataset, please cite the original Zenodo record and its associated paper: Komiske, Metodiev, Thaler, Energy Flow Networks: Deep Sets for Particle Jets, JHEP 01 (2019) 121, arXiv:1810.05165

DiLullo, Nicholas [Brown University] (ORCID:000000↗
DOE OSTI2023

The Calpain-7 protease functions together with the ESCRT-III protein IST1 within the midbody to regulate the timing and completion of abscission

The Endosomal Sorting Complexes Required for Transport (ESCRT) machinery mediates the membrane fission step that completes cytokinetic abscission and separates dividing cells. Filaments composed of ESCRT-III subunits constrict membranes of the intercellular bridge midbody to the abscission point. These filaments also bind and recruit cofactors whose activities help execute abscission and/or delay abscission timing in response to mitotic errors via the NoCut/Abscission checkpoint. We previously showed that the ESCRT-III subunit IST1 binds the cysteine protease Calpain-7 (CAPN7) and that CAPN7 is required for both efficient abscission and NoCut checkpoint maintenance. Here, we report biochemical and crystallographic studies showing that the tandem microtubule-interacting and trafficking (MIT) domains of CAPN7 bind simultaneously to two distinct IST1 MIT interaction motifs. Structure-guided point mutations in either CAPN7 MIT domain disrupted IST1 binding in vitro and in cells, and depletion/rescue experiments showed that the CAPN7-IST1 interaction is required for (1) CAPN7 recruitment to midbodies, (2) efficient abscission, and (3) NoCut checkpoint arrest. CAPN7 proteolytic activity is also required for abscission and checkpoint maintenance. Hence, IST1 recruits CAPN7 to midbodies, where its proteolytic activity is required to regulate and complete abscission.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Development of an inexpensive matrix-assisted laser desorption—time of flight mass spectrometry method for the identification of endophytes and rhizobacteria cultured from the microbiome associated with maize

Many endophytes and rhizobacteria associated with plants support the growth and health of their hosts. The vast majority of these potentially beneficial bacteria have yet to be characterized, in part because of the cost of identifying bacterial isolates. Matrix-assisted laser desorption-time of flight (MALDI-TOF) has enabled culturomic studies of host-associated microbiomes but analysis of mass spectra generated from plant-associated bacteria requires optimization. In this study, we aligned mass spectra generated from endophytes and rhizobacteria isolated from heritage and sweet varieties of Zea mays. Multiple iterations of alignment attempts identified a set of parameters that sorted 114 isolates into 60 coherent MALDI-TOF taxonomic units (MTUs). These MTUs corresponded to strains with practically identical (>99%) 16S rRNA gene sequences. Mass spectra were used to train a machine learning algorithm that classified 100% of the isolates into 60 MTUs. These MTUs provided >70% coverage of aerobic, heterotrophic bacteria readily cultured with nutrient rich media from the maize microbiome and allowed prediction of the total diversity recoverable with that particular cultivation method. Acidovorax sp., Pseudomonas sp. and Cellulosimicrobium sp. dominated the library generated from the rhizoplane. Relative to the sweet variety, the heritage variety contained a high number of MTUs. The ability to detect these differences in libraries, suggests a rapid and inexpensive method of describing the diversity of bacteria cultured from the endosphere and rhizosphere of maize.

dereplication↗