Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “molecular modelling”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 415 records · Page 23
All sourcesNASA NTRSDOE OSTI
NASA NTRS1995

Multirepressor Control Systems For Efficient Promoter Regulation

Report presents numerical-simulation study, based on molecular-level mathematical models, to evaluate effectiveness of eight different configurations of repressor synthesis control of cloned-product-gene expression initiated from promoter/operator genetic sequence. In study, both single- and dual-repressor situations considered, using genetically structured molecules for lac and IPR promotor/operator in example calculations.

Bailey, James E.↗
NASA NTRS1995

Excitation of the arched filaments near the Galactic Center

We discuss measurements of the far-infrared (FIR) fine structure lines from (S III) (33 microns), (Si II) (35 microns), (O III) (51, 88 microns), (OI) (63 microns), (C II) (158 microns), and the adjacent continua in a strip crossing two of the thermal radio filaments in the Galactic Center 'Arch'. The near spatial coincidence of the line and continuum emission maxima with the radio filaments demonstrates that any excitation mechanism must account for both the line and continuum emission. The peak FIR luminosity and (O III) emission pose difficulties for collisional excitation models; photoionization of molecular cloud edges by a random distribution of stars is the most plausible mechanism proposed.

Colgan, Sean W. J.↗
NASA NTRS1994

Excitation of the E2 and W1 "Arched" Filaments Near the Galactic Center as Deduced from Far-Infrared Spectroscopy

We present measurements of the far-infrared (FIR) fine structure lines [S III] (33 microns), [Si II] (35 microns), [O III] (51, 88 microns), [O I] (63 microns) and [C II] (158 microns) and the adjacent continua along a scan crossing the E2 and W1 thermal radio filaments in the Galactic center 'Arc'. The deduced electron density and excitation vary along the scan by less than factors of two and three, respectively. The properties of the two filaments are similar: the line and continuum fluxes peak at the radio ridge, and the ridge/off-ridge contrast is greatest for the FIR continuum and ionized lines, lower for the single dish radio measurements (Sofue et al. 1986), and smallest for the low excitation lines. The spatial coincidence of the FIR and radio peaks demonstrates that any excitation mechanism for the radio continuum filaments must also account for the FIR line and continuum emission. The FIR luminosity of approx. 3 x 10(exp 5) Solar Luminosity per beam, and the association of [O III] emission with the filaments poses difficulties for shock and MHD models. Photoionization of molecular cloud edges by a random distribution of stars is the most likely excitation mechanism among those proposed. The continuum and the low excitation line fluxes are consistent with an origin in photodissociated molecular material adjacent to the photoionized gas.

Colgan, Sean W.J.↗
NASA NTRS2002

Interstellar Deuterium, Nitrogen and Oxygen Abundances Toward BD+28(deg) 4211: Results from the Far Ultraviolet Spectroscopic Explorer

High resolution far-ultraviolet spectra of the O-type subdwarf BD+28(deg)4211 were obtained with the Far Ultraviolet Spectroscopic Explorer to measure the interstellar deuterium, nitrogen, and oxygen abundances in this direction. The interstellar D(I) transitions are analyzed down to Ly(ioat) at 920.7 A. The star was observed several times at different target offsets in the direction of spectral dispersion. The aligned and coedited spectra have high signal-to-noise ratios (S/N=50-100). D(I), N(I), and O(I) transitions were analyzed with curve-of-growth and profile fitting techniques. A model of interstellar molecular hydrogen on the line of sight was derived from H(II) lines in the FUSE spectra and used to help analyze some features where blending with H(II) was significant. The H(I) column density was determined from high resolution HST/STIS spectra of Ly(alpha) to be log N(H(I))= 19.846+/-0.035(2sigma), which is higher than is typical for sight lines in the local ISM studied for D/H. We found that D/H=(1.39+/-0.21)x 10(exp -5)(2sigma) and O/H=(2.37+/-0.55)x10(exp -4)(2sigma). O/H toward BD+28(deg)4211 appears to be significantly below the mean O/H ratio for the ISM and the Local Bubble.

Sonneborn, George↗
NASA NTRS2002

Computational Nanotechnology of Molecular Materials, Electronics and Machines

This viewgraph presentation covers carbon nanotubes, their characteristics, and their potential future applications. The presentation include predictions on the development of nanostructures and their applications, the thermal characteristics of carbon nanotubes, mechano-chemical effects upon carbon nanotubes, molecular electronics, and models for possible future nanostructure devices. The presentation also proposes a neural model for signal processing.

Srivastava, D.↗
NASA NTRS2004

The Structure of Young Stellar Systems: Establishing the Initial Conditions for Planet Formation

FYO1-FY03 Origins support to the PI had been as part of an effort involving Profs. Blake, van Dishoeck and L.G. Mundy of the University of Maryland. As outlined below, the merging of BIMA+OVRO into the Combined Array for Research in Millimeter Astronomy (CARMA) and our mutual involvement in the Spitzer Legacy Science program now provides a more natural means of continuing the Caltech/Maryland collaboration. In addition, the spectroscopy/radiative transfer programs led by Profs. Blake, Hogerheijde, and van Dishoeck form a more cohesive basis for a single proposal. Students supported by our previous Origins grant have been involved in making some of the first sub-arcsecond resolution images of the morphology and chemistry of individual YSOs at OVRO and BIMA, in the analysis of IR spectra taken by ISO, and in continuing exploratory IR diffraction-limited imaging and spectroscopy at the Keck and VLT observatories. Notable scientific accomplishments in the past grant period include: 1) detecting high density and temperature hot cores in the dynamically accreting envelopes of low mass protostars that contain significant quantities of complex, prebioitc molecules, 2) imaging chemical and isotopic zonation in the outer regions of T Tauri star accretion disks, particularly fractional ionization and D/H studies, 3) acquiring and modeling the first extensive CO v = 1 approaches 0 spectroscopy survey of the terrestrial planet-forming region of circumstellar accretion disks, and 4) optimizing detailed radiative transfer modeling of the molecular and dust emission from YSO envelopes and from comets, including a new parallelized implementation.

Blake, Geoffrey A.↗
NASA NTRS2014

Detection of Nitric Oxide by the Sample Analysis at Mars (SAM) Instrument Implications for the Presence of Nitrates

One of the main goals of the Mars Science Laboratory is to determine whether the planet ever had environmental conditions able to support microbial life. Nitrogen is a fundamental element for life, and is present in structural (e.g., proteins), catalytic (e.g., enzymes and ribozymes), energy transfer (e.g., ATP) and information storage (RNA and DNA) biomolecules. Planetary models suggest that molecular nitrogen was abundant in the early Martian atmosphere, but was rapidly lost to space by photochemistry, sputtering impact erosion, and oxidized and deposited to the surface as nitrate. Nitrates are a fundamental source for nitrogen to terrestrial microorganisms. Therefore, the detection of nitrates in soils and rocks is important to assess the habitability of a Martian environment. SAM is capable of detecting nitrates by their thermal decomposition into nitric oxide, NO. Here we analyze the release of NO from soils and rocks examined by the SAM instrument at Gale crater, and discuss its origin.

Navarro-Gonzalez, R.↗
NASA NTRS2016

Effect of Molecular Flexibility upon Ice Adhesion Shear Strength

Ice formation on aircraft surfaces effects aircraft performance by increasing weight and drag leading to loss of lift. Current active alleviation strategies involve pneumatic boots, heated surfaces, and usage of glycol based de-icing fluids. Mitigation or reduction of in-flight icing by means of a passive approach may enable retention of aircraft capabilities, i.e., no reduction in lift, while reducing the aircraft weight and mechanical complexity. Under a NASA Aeronautics Research Institute Seedling activity, the effect of end group functionality and chain length upon ice adhesion shear strength (IASS) was evaluated with the results indicating that chemical functionality and chain length (i.e. molecular flexibility) affected IASS. Based on experimental and modeling results, diamine monomers incorporating molecular flexibility as either a side chain or in between diamine functionalities were prepared, incorporated into epoxy resins that were subsequently used to fabricate coatings on aluminum substrates, and tested in a simulated icing environment. The IASS was found to be lower when molecular flexibility was incorporated in the polymer chain as opposed to a side chain.

Smith, Joseph G.↗
NASA NTRS2006

Molecular-dynamics Simulation-based Cohesive Zone Representation of Intergranular Fracture Processes in Aluminum

A traction-displacement relationship that may be embedded into a cohesive zone model for microscale problems of intergranular fracture is extracted from atomistic molecular-dynamics simulations. A molecular-dynamics model for crack propagation under steady-state conditions is developed to analyze intergranular fracture along a flat 99 [1 1 0] symmetric tilt grain boundary in aluminum. Under hydrostatic tensile load, the simulation reveals asymmetric crack propagation in the two opposite directions along the grain boundary. In one direction, the crack propagates in a brittle manner by cleavage with very little or no dislocation emission, and in the other direction, the propagation is ductile through the mechanism of deformation twinning. This behavior is consistent with the Rice criterion for cleavage vs. dislocation blunting transition at the crack tip. The preference for twinning to dislocation slip is in agreement with the predictions of the Tadmor and Hai criterion. A comparison with finite element calculations shows that while the stress field around the brittle crack tip follows the expected elastic solution for the given boundary conditions of the model, the stress field around the twinning crack tip has a strong plastic contribution. Through the definition of a Cohesive-Zone-Volume-Element an atomistic analog to a continuum cohesive zone model element - the results from the molecular-dynamics simulation are recast to obtain an average continuum traction-displacement relationship to represent cohesive zone interaction along a characteristic length of the grain boundary interface for the cases of ductile and brittle decohesion. Keywords: Crack-tip plasticity; Cohesive zone model; Grain boundary decohesion; Intergranular fracture; Molecular-dynamics simulation

Yamakov, Vesselin I.↗
NASA NTRS1990

A scaling law of radial gas distribution in disk galaxies

Based on the idea that local conditions within a galactic disk largely determine the region's evolution time scale, researchers built a theoretical model to take into account molecular cloud and star formations in the disk evolution process. Despite some variations that may be caused by spiral arms and central bulge masses, they found that many late-type galaxies show consistency with the model in their radial atomic and molecular gas profiles. In particular, researchers propose that a scaling law be used to generalize the gas distribution characteristics. This scaling law may be useful in helping to understand the observed gas contents in many galaxies. Their model assumes an exponential mass distribution with disk radius. Most of the mass are in atomic gas state at the beginning of the evolution. Molecular clouds form through a modified Schmidt Law which takes into account gravitational instabilities in a possible three-phase structure of diffuse interstellar medium (McKee and Ostriker, 1977; Balbus and Cowie, 1985); whereas star formation proceeds presumably unaffected by the environmental conditions outside of molecular clouds (Young, 1987). In such a model both atomic and molecular gas profiles in a typical galactic disk (as a result of the evolution) can be fitted simultaneously by adjusting the efficiency constants. Galaxies of different sizes and masses, on the other hand, can be compared with the model by simply scaling their characteristic length scales and shifting their radial ranges to match the assumed disk total mass profile sigma tot(r).

Wang, Zhong↗
NASA NTRS1988

On the origin of the Orion and Monoceros molecular cloud complexes

A detailed model for the origin of the Orion and Monoceros cloud complexes is presented, showing that a single high-velocity H I cloud-galaxy collision can explain their main observed features. The collision generates massive shocked layers, and self-gravity can then provide the conditions for the transformation of these layers into molecular clouds. The clouds formed by the collision maintain the motion of their parental shocked gas and reach positions located far away from the plane. According to this model, both the Orion and Monoceros complexes were formed some 60 million yr ago, when the original shocked layer was fragmented by Galactic tidal forces.

Franco, J.↗
NASA NTRS2002

Root gravitropism: an experimental tool to investigate basic cellular and molecular processes underlying mechanosensing and signal transmission in plants

The ability of plant organs to use gravity as a guide for growth, named gravitropism, has been recognized for over two centuries. This growth response to the environment contributes significantly to the upward growth of shoots and the downward growth of roots commonly observed throughout the plant kingdom. Root gravitropism has received a great deal of attention because there is a physical separation between the primary site for gravity sensing, located in the root cap, and the site of differential growth response, located in the elongation zones (EZs). Hence, this system allows identification and characterization of different phases of gravitropism, including gravity perception, signal transduction, signal transmission, and curvature response. Recent studies support some aspects of an old model for gravity sensing, which postulates that root-cap columellar amyloplasts constitute the susceptors for gravity perception. Such studies have also allowed the identification of several molecules that appear to function as second messengers in gravity signal transduction and of potential signal transducers. Auxin has been implicated as a probable component of the signal that carries the gravitropic information between the gravity-sensing cap and the gravity-responding EZs. This has allowed the identification and characterization of important molecular processes underlying auxin transport and response in plants. New molecular models can be elaborated to explain how the gravity signal transduction pathway might regulate the polarity of auxin transport in roots. Further studies are required to test these models, as well as to study the molecular mechanisms underlying a poorly characterized phase of gravitropism that is independent of an auxin gradient.

Non-NASA Center↗
NASA NTRS1992

Numerical models for the collapse and fragmentation of centrally condensed molecular cloud cores

The gravitational collapse and fragmentation of centrally condensed molecular cloud cores are investigated using a new hydrodynamical code. The numerical scheme is second-order accurate and uses explicit finite difference methods to advance the fluid variables on a 3D Cartesian grid. Two initial power-law density profiles, rho varies as r exp -1 and rho varies as r exp -2, are considered, as well as two initial density perturbations in the azimuthal coordinate theta, rho-i - rho(1 + a cos 2theta) where a = 0.1 and 0.5. Fragmentation is found to be possible in these centrally condensed cores if the initial conditions also include differential rotation. Models which collapse with initial uniform rotation do not produce fragments. If molecular cloud cores are indeed centrally condensed, as suggested by observations of star-forming regions and by studies of ambipolar diffusion, then differential rotation may be a mechanism for producing binary protostars during gravitational collapse.

Myhill, Elizabeth A.↗
NASA NTRS2003

A Self-Contained Mapping Closure Approximation for Scalar Mixing

Scalar turbulence exhibits interplays of coherent structures and random fluctuations over a broad range of spatial and temporal scales. This feature necessitates a probabilistic description of the scalar dynamics, which can be achieved comprehensively by using probability density functions (PDFs). Therefore, the challenge is to obtain the scalar PDFs (Lundgren 1967; Dopazo 1979). Generally, the evolution of a scalar is governed by three dynamical processes: advection, diffusion and reaction. In a PDF approach (Pope 1985), the advection and reaction can be treated exactly but the effect of molecular diffusion has to be modeled. It has been shown (Pope 1985) that the effect of molecular diffusion can be expressed as conditional dissipation rates or conditional diffusions. The currently used models for the conditional dissipation rates and conditional diffusions (Pope 1991) have resisted deduction from the fundamental equations and are unable to yield satisfactory results for the basic test cases of decaying scalars in isotropic turbulence, although they have achieved some success in a variety of individual cases. The recently developed mapping closure approach (Pope 1991; Chen, Chen & Kraichnan 1989; Kraichnan 1990; Klimenko & Pope 2003) provides a deductive method for conditional dissipation rates and conditional di usions, and the models obtained can successfully describe the shape relaxation of the scalar PDF from an initial double delta distribution to a Gaussian one. However, the mapping closure approach is not able to provide the rate at which the scalar evolves. The evolution rate has to be modeled. Therefore, the mapping closure approach is not closed. In this letter, we will address this problem.

He, Guo-Wei↗
NASA NTRS1992

Cumulative atomic multipole moments complement any atomic charge model to obtain more accurate electrostatic properties

The quality of several atomic charge models based on different definitions has been analyzed using cumulative atomic multipole moments (CAMM). This formalism can generate higher atomic moments starting from any atomic charges, while preserving the corresponding molecular moments. The atomic charge contribution to the higher molecular moments, as well as to the electrostatic potentials, has been examined for CO and HCN molecules at several different levels of theory. The results clearly show that the electrostatic potential obtained from CAMM expansion is convergent up to R-5 term for all atomic charge models used. This illustrates that higher atomic moments can be used to supplement any atomic charge model to obtain more accurate description of electrostatic properties.

NASA Discipline Number 52-20↗
NASA NTRS1995

PAHs as Probes of Photodissociation Regions in M17 and the Orion Bar

We have obtained narrow-band images of M17 SW and the Orion Bar in the PAH emission bands and pedestal (3.29, 3. 36, 3. 42 microns) The emission bands at 3.3 and 3.4 microns arise from the photodissociation regions (PDRs) between ionized gas and molecular clouds. In both M17 SW and the Orion Bar, the PDRs are nearly edge-on, providing excellent opportunities for comparing models of PDRs with observations. We observe an exponential drop in the strength of the 3.3 micron emission with a 1/e distance of 9 arcsec in Orion and 5 arcsec in M17 SW, in good agreement with previous observations. These results show that the two regions are very similar, and they imply that the mean density is 2.4 times higher in the Orion Bar than in the M17 SW PDR. However, we also find that in the Orion Bar, the ratio of the 3.4 micron emission to the 3.3 micron emission is consistent with the 1/e distance of 3 arcsec determined from PDR models fit to the molecular H and CO in the Orion Bar. We are presently investigating how the main band can imply that the UV field is dropping with a 1/e distance of 9 arcsec while the model PDR predicts a 1/e distance of 3 arcsec.

Sloan, G. C.↗
NASA NTRS1996

Parallel Simulation of Unsteady Turbulent Flames

Time-accurate simulation of turbulent flames in high Reynolds number flows is a challenging task since both fluid dynamics and combustion must be modeled accurately. To numerically simulate this phenomenon, very large computer resources (both time and memory) are required. Although current vector supercomputers are capable of providing adequate resources for simulations of this nature, the high cost and their limited availability, makes practical use of such machines less than satisfactory. At the same time, the explicit time integration algorithms used in unsteady flow simulations often possess a very high degree of parallelism, making them very amenable to efficient implementation on large-scale parallel computers. Under these circumstances, distributed memory parallel computers offer an excellent near-term solution for greatly increased computational speed and memory, at a cost that may render the unsteady simulations of the type discussed above more feasible and affordable.This paper discusses the study of unsteady turbulent flames using a simulation algorithm that is capable of retaining high parallel efficiency on distributed memory parallel architectures. Numerical studies are carried out using large-eddy simulation (LES). In LES, the scales larger than the grid are computed using a time- and space-accurate scheme, while the unresolved small scales are modeled using eddy viscosity based subgrid models. This is acceptable for the moment/energy closure since the small scales primarily provide a dissipative mechanism for the energy transferred from the large scales. However, for combustion to occur, the species must first undergo mixing at the small scales and then come into molecular contact. Therefore, global models cannot be used. Recently, a new model for turbulent combustion was developed, in which the combustion is modeled, within the subgrid (small-scales) using a methodology that simulates the mixing and the molecular transport and the chemical kinetics within each LES grid cell. Finite-rate kinetics can be included without any closure and this approach actually provides a means to predict the turbulent rates and the turbulent flame speed. The subgrid combustion model requires resolution of the local time scales associated with small-scale mixing, molecular diffusion and chemical kinetics and, therefore, within each grid cell, a significant amount of computations must be carried out before the large-scale (LES resolved) effects are incorporated. Therefore, this approach is uniquely suited for parallel processing and has been implemented on various systems such as: Intel Paragon, IBM SP-2, Cray T3D and SGI Power Challenge (PC) using the system independent Message Passing Interface (MPI) compiler. In this paper, timing data on these machines is reported along with some characteristic results.

Menon, Suresh↗
NASA NTRS1999

On The Development of Biophysical Models for Space Radiation Risk Assessment

Experimental techniques in molecular biology are being applied to study biological risks from space radiation. The use of molecular assays presents a challenge to biophysical models which in the past have relied on descriptions of energy deposition and phenomenological treatments of repair. We describe a biochemical kinetics model of cell cycle control and DNA damage response proteins in order to model cellular responses to radiation exposures. Using models of cyclin-cdk, pRB, E2F's, p53, and GI inhibitors we show that simulations of cell cycle populations and GI arrest can be described by our biochemical approach. We consider radiation damaged DNA as a substrate for signal transduction processes and consider a dose and dose-rate reduction effectiveness factor (DDREF) for protein expression.

Cucinotta, F. A.↗