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At least 415 records · Page 23

Application of a Reynolds Stress turbulence model to a supersonic hydrogen-air diffusion flame

A second-order differential Reynolds Stress turbulence model has been applied to the Favre-averaged Navier-Stokes equations for the study of supersonic flows undergoing hydrogen-air chemical reactions. An assumed Beta Probability Density Function is applied to account for the chemical source terms in the conservation equations. An algebraic Reynolds Flux model is used for the fluctuating density-velocity as well as the species mass fraction-velocity correlations. The variances of temperature and species fluctuations are also modelled using an algebraic flux technique. A seven-species, seven-reaction finite rate chemistry mechanism is used to simulate the combustion processes. The resulting formulation is validated by comparison with experimental data on reacting supersonic axisymmetric jets. Results obtained for specific conditions indicate that the effect of chemical reaction on the turbulence is significant.

Chandrasekhar, R.↗

Competitive displacement among post-Paleozoic cyclostome and cheilostome bryozoans

Encrusting bryozoans provide one of the few systems in the fossil record in which ecological competition can be observed directly at local scales. The macroevolutionary history of diversity of cyclostome and cheilostome bryozoans is consistent with a coupled-logistic model of clade displacement predicated on species within clades interacting competitively. The model matches observed diversity history if the model is perturbed by a mass extinction with a position and magnitude analogous to the Cretaceous/Tertiary boundary event, Although it is difficult to measure all parameters in the model from fossil data, critical factors are intrinsic rates of extinction, which can be measured. Cyclostomes maintained a rather low rate of extinction, and the model solutions predict that they would lose diversity only slowly as competitively superior species of cheilostomes diversified into their environment. Thus, the microecological record of preserved competitive interactions between cyclostome and cheilostome bryozoans and the macroevolutionary record of global diversity are consistent in regard to competition as a significant influence on diversity histories of post-Paleozoic bryozoans.

NASA Discipline Exobiology↗

Numerical study of chemically reacting flows using an LU scheme

A new computational fluid dynamic code has been developed for the study of mixing and chemical reactions in the flow fields of ramjets and scramjets. The code employs an implicit finite volume, lower-upper symmetric successive overrelaxation scheme for solving the complete two-dimensional Navier-Stokes equations and species transport equations in a fully-coupled and very efficient manner. The combustion processes are modeled by an 8-species, 14-step finite rate chemistry model whereas turbulence is simulated by a Baldwin-Lomax algebraic model. The validity of the code is demonstrated by comparing the numerical calculations with both experimental data and previous calculations of a cold flow helium injection into a straight channel and premixed hydrogen-air reacting flows in a ramped duct. The code is then used to calculate the mixing and chemical reactions of a hydrogen jet transversely injected into a supersonic airstream. Results are presented describing the flow field, the recirculation regions in front and behind the injector, and the chemical reactions.

Shuen, Jian Shun↗

Numerical study of chemically reacting flows using an LU scheme

A new computational fluid dynamic code has been developed for the study of mixing and chemical reactions in the flow fields of ramjets and scramjets. The code employs an implicit finite volume, lower-upper symmetric successive overrelaxation scheme for solving the complete two-dimensional Navier-Stokes equations and species transport equations in a fully-coupled and very efficient manner. The combustion processes are modeled by an 8-species, 14-step finite rate chemistry model whereas turbulence is simulated by a Baldwin-Lomax algebraic model. The validity of the code is demonstrated by comparing the numerical calculations with both experimental data and previous calculations of a cold flow helium injection into a straight channel and premixed hydrogen-air reacting flows in a ramped duct. The code is then used to calculate the mixing and chemical reactions of a hydrogen jet transversely injected into a supersonic airstream. Results are presented describing the flow field, the recirculation regions in front and behind the injector, and the chemical reactions.

Shuen, Jian Shun↗

Comparison of model results transporting the odd nitrogen family with results transporting separate odd nitrogen species

A fast two-dimensional residual circulation stratospheric family transport model, designed to minimize computer requirements, is developed. The model was used to calculate the ambient and perturbed atmospheres in which odd nitrogen species are transported as a family, and the results were compared with calculations in which HNO3, N2O5, ClONO2, and HO2NO2 are transported separately. It was found that ozone distributions computed by the two models for a present-day atmosphere are nearly identical. Good agreement was also found between calculated species concentrations and the ozone response, indicating the general applicability of the odd-nitrogen family approximations.

Douglass, Anne R.↗

Degradation and recovery of solid oxide fuel cell performance by control of cathode surface acidity: Case study – Impact of Cr followed by Ca infiltration

Solid oxide fuel cells (SOFC) have attracted attention as clean and efficient energy conversion devices with low emissions. However, several degradation mechanisms limit the electrochemical performance of current SOFCs, with cathode degradation due to Cr-poisoning from metal interconnects particularly problematic. The acidity/basicity of binary additives has been found to be a sensitive descriptor of the oxygen exchange kinetics, indicating that acidic Cr-species/basic Ca-species can be expected to deactivate/activate the cathode surface, respectively. Inspired by recent advances, the feasibility of relative acidity as a tool for reviving degraded SOFCs is demonstrated by neutralizing Cr-poisoned SOFCs by subsequent serial infiltration of Ca-species. Furthermore, a model mixed ionic and electronic conducting oxide, Pr 0.1 Ce 0.9 O 2-δ (PCO), is selected as the cathode material. Area-specific resistances (ASR) of symmetric cells obtained by electrochemical impedance spectroscopy show that Cr-infiltration results in a seven-fold increase in ASR, while subsequent infiltration of Ca-species leads to complete recovery. Performance degradation and recovery are attributed to depressed/enhanced redox properties at the PCO surface, as supported by XPS analysis. Experiments using anode-supported fuel cells show a reduction in peak power density by 26% upon Cr-infiltration, reversed following Ca-infiltration, after which no degradation is observed during subsequent operation for 100 h.

(Pr,Ce)O2-δ↗

Enhanced Selectivity for C 2 H 4 Production from C 2 H 6 on Partially Chlorinated IrO 2 (110) Surfaces

Modifying metal oxide surfaces to limit their oxidizing activity can provide a means of improving catalytic selectivity toward the partial oxidation of light alkanes. Here, in this study, we investigated the oxidation of C 2 H 6 on Cl-modified IrO 2 (110) surfaces using temperature-programmed reaction spectroscopy (TPRS) and first-principles microkinetic modeling. We find that substituting Cl for O in the IrO 2 (110) surface enhances the selectivity for C 2 H 6 conversion to C 2 H 4 during TPRS by suppressing extensive oxidation to CO x products, while also either enhancing C 2 H 4 production or altering it to a lesser extent, depending on the initial C 2 H 6 coverage. The C 2 H 4 selectivity increased with increasing C 2 H 6 and Cl coverage, but reached a limiting value below 50%. The Cl coverage changed negligibly during C 2 H 6 oxidation, and the surface reactivity decreased only marginally for Cl coverages up to 0.5 ML (monolayer). TPRS simulations using a microkinetic model predict C 2 H 4 and CO x product yields as a function of the Cl coverage that agree closely with the experimental results. According to the simulations, C 2 H 6 conversion to C 2 H 4 occurs on Cl-IrO 2 (110) by the hydrogenation of C 2 H 3 * species adsorbed in blocked states, in which neighboring sites are occupied only by unreactive HO and Cl species. The microkinetic modeling shows that H-hopping away from surface HO groups provides a relatively efficient route for C 2 H 3 * to escape blocked configurations and dehydrogenate, and that this process can limit the C 2 H 4 selectivity on Cl-IrO 2 (110) under the conditions studied. Overall, our results demonstrate that Cl-substitution into IrO 2 (110) enhances the selectivity for C 2 H 4 production from C 2 H 6 and provides insights into the reaction mechanism that can guide strategies to further improve the C 2 H 4 selectivity.

IrO2↗

Model of Mixing Layer With Multicomponent Evaporating Drops

A mathematical model of a three-dimensional mixing layer laden with evaporating fuel drops composed of many chemical species has been derived. The study is motivated by the fact that typical real petroleum fuels contain hundreds of chemical species. Previously, for the sake of computational efficiency, spray studies were performed using either models based on a single representative species or models based on surrogate fuels of at most 15 species. The present multicomponent model makes it possible to perform more realistic simulations by accounting for hundreds of chemical species in a computationally efficient manner. The model is used to perform Direct Numerical Simulations in continuing studies directed toward understanding the behavior of liquid petroleum fuel sprays. The model includes governing equations formulated in an Eulerian and a Lagrangian reference frame for the gas and the drops, respectively. This representation is consistent with the expected volumetrically small loading of the drops in gas (of the order of 10 3), although the mass loading can be substantial because of the high ratio (of the order of 103) between the densities of liquid and gas. The drops are treated as point sources of mass, momentum, and energy; this representation is consistent with the drop size being smaller than the Kolmogorov scale. Unsteady drag, added-mass effects, Basset history forces, and collisions between the drops are neglected, and the gas is assumed calorically perfect. The model incorporates the concept of continuous thermodynamics, according to which the chemical composition of a fuel is described probabilistically, by use of a distribution function. Distribution functions generally depend on many parameters. However, for mixtures of homologous species, the distribution can be approximated with acceptable accuracy as a sole function of the molecular weight. The mixing layer is initially laden with drops in its lower stream, and the drops are colder than the gas. Drop evaporation leads to a change in the gas-phase composition, which, like the composition of the drops, is described in a probabilistic manner

Bellan, Josette↗

Theoretical studies of a molecular beam generator

The following is a proposed baseline model that is being developed for the simulation of hydrodynamic generator, which can be converted at a later date to magnetohydrodynamic MHD thruster by adding the necessary electric and magnetic fields. The following development will include the electric and magnetic terms, however, the initial computer program will not include these terms. The analysis that follows is a one species, single temperature model constructed over a domain that is defined by an enclosed region.

Heinbockel, John H.↗

Ionospheric ion composition from satellite measurements made during 1970-1980 - Altitude profiles

Ion-mass spectrometers were carried by a number of satellites in the 1970s. The ion-composition measurements from two of these missions, the Orbiting Geophysical Observatory-6 and the Atmosphere Explorer-C, are collected into an ion composition data base to evaluate several widely used empirical and theoretical models for the species H(+), He(+), N(+), O(+), NO(+), N2(+), and O2(+). The data base covers all latitudes and local times, and the altitude range from 150 km to 1200 km, but here altitude plots are presented of the ion densities at noon and at dip latitudes of 20-40 deg N. The satellite data are compared with an early ion-density profile, with the Koehnlein and IRI-90 empirical models, and with the Utah State University theoretical ionosphere model. These comparisons serve to verify some aspects of the models, but they also reveal some outstanding differences. The solar activity dependence of H(+), He(+), N(+), and O(+) is demonstrated, although this has not been possible for the molecular ions because low altitude measurements have not been made near solar maximum.

Hoegy, W. R.↗

Effects of stereoisomeric structure and bond location on the ignition and reaction pathways of hexenes

The current work presents new experimental autoignition and speciation data on the two cis-hexene isomers: cis-2-hexene and cis-3-hexene. The new data provide insights on the effects of carbon-carbon double bond location and stereoisomeric structures on ignition delay times and reaction pathways for linear hexene isomers. Experiments were performed using the University of Michigan rapid compression facility to determine ignition delay times from pressure-time histories. Stoichiometric (Φ = 1.0) mixtures at dilution levels of inert gas to O 2 = 7.5:1 (mole basis) were investigated at an average pressure of 11 atm and temperatures from 809 to 1052 K. Speciation experiments were conducted at T = 900 K for the two cis-hexene isomers, where fast-gas sampling and gas chromatography were used to identify and quantify the two cis-hexene isomers and stable intermediate species. The ignition delay time data showed negligible sensitivity to the location of the carbon-carbon double bond and the stereoisomeric structure (cis-trans), and the species data showed no correlation with the stereoisomeric structure, but there was a strong correlation of some of the measured species with the location of the double bond in the hexene isomer. In particular, 2-hexene showed strong selectivity to propene, acetaldehyde, and 1,3-butadiene, and 3-hexene showed selectivity to propanal. Model predictions of ignition delay times were in excellent agreement with the experimental data. Furthermore, there was generally good agreement for the model predictions of the species data for 2-hexene; however, the mechanism overpredicted some of the small aldehyde (C 2 -C 4 ) species for 3-hexene. Reaction pathway analysis indicates the hexenes are almost exclusively consumed by H-atom abstraction reactions at the conditions studied (P = 11 atm, T > 900 K), and not by C 3 -C 4 scission as observed in high-temperature (>1300 K) hexene ignition studies. Improved estimates for 3-hexene + OH reactions may improve model predictions for the species measured in this work.

42 ENGINEERING↗

Three-dimensional computation of mixing of transverse injector in a ducted supersonic airstream

Numerical solutions of the three-dimensional mass-averaged elliptic Navier-Stokes equations, including species transport, are obtained for nonreacting, turbulent, mixing flow fields for the case of transverse sonic injection of a secondary gas into a supersonic airstream through a circular orifice injector. Results are presented for flow through a constant area duct and through a duct with a rearward-facing step upstream of the injector. The equations are numerically integrated using MacCormack's explicit method and turbulence is included using the Baldwin-Lomax algebraic eddy viscosity model. In the species transport and energy equations, diffusion coefficients based on Fick's law and an assumption of unit Lewis number are applied. The computations were performed on a CDC-VPS-32 (extended version of Cyber-205) using a grid consisting of approximately 200,000 points. The computed results are compared with experimentally observed penetration and spreading boundaries for an injected gas at two dynamic pressure ratios. Three-dimensional flow field structures are dipicted in terms of static pressure, mass fractions of species and velocity vectors.

Uenishi, K.↗

Lagrangian photochemical modeling studies of the 1987 Antarctic spring vortex. II - Seasonal trends in ozone

A photochemical model consisting of 40 species and 107 reactions is integrated along 80-day air parcel trajectories calculated in the lower stratosphere for the springtime Antarctic. For the trajectory starting at 58 deg S, which may be regarded as outside the circumpolar vortex, only a small change in O3 occurs in the model. In contrast, for the air parcel starting in the vortex at 74 deg S, the O3 concentration is reduced by 93 percent during the 80 days from the beginning of August to late October. The model results for several species are compared with measurements from the Airborne Antarctic Ozone Experiment and, in general, good agreement is obtained. In the model, the dentrification of the air parcels in polar stratospheric clouds increases the amount of chlorine present in active form. Heterogeneous reactions maintain high active chlorine which destroys O3 via the formation of the ClO dimer. Results of calculations with reduced concentrations of inorganic chlorine show considerably reduced O3 destruction rates and compare favorably with the behavior of total O3 since the late 1970s. The remaining major uncertainties in the photochemical aspects of the Antarctic ozone hole are highlighted.

Austin, J.↗

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

Plasmids play a major role facilitating the spread of antimicrobial resistance between bacteria. Understanding the host range and dissemination trajectories of plasmids is critical for surveillance and prevention of antimicrobial resistance. Identification of plasmid host ranges could be improved using automated pattern detection methods compared to homology-based methods due to the diversity and genetic plasticity of plasmids. In this study, we developed a method for predicting the host range of plasmids using machine learning—specifically, random forests. We trained the models with 8,519 plasmids from 359 different bacterial species per taxonomic level; the models achieved Matthews correlation coefficients of 0.662 and 0.867 at the species and order levels, respectively. Our results suggest that despite the diverse nature and genetic plasticity of plasmids, our random forest model can accurately distinguish between plasmid hosts. This tool is available online through the Center for Genomic Epidemiology (https://cge.cbs.dtu.dk/services/PlasmidHostFinder/).

59 BASIC BIOLOGICAL SCIENCES↗

Phosphorus recycling by mineral-catalyzed ribonucleotide cleavage on iron and manganese oxides

Abstract Phosphorus is an essential element influencing both food security via plant fertilization, and water pollution through excessive phosphorus use, yet the phosphorus cycle in ecosystems is poorly known. In particular, beyond adsorption, the role of iron and manganese oxides in catalyzing the abiotic dephosphorylation of biomolecules is debated. Here, we studied the reactions of ribonucleotides, containing different phosphate bonding, with goethite, hematite, and birnessite. We employed both high-resolution mass spectrometry of solution species and molecular modeling simulations of ribonucleotide-mineral complexes. Results disclose an up to fivefold preferential hydrolytic cleavage of a phosphoanhydride bond over a phosphoester bond, indicating that mineral-catalyzed reactions reflect the hierarchy reported for the activity of phosphatase enzymes. The fourfold higher catalytic reactivity of goethite and birnessite versus hematite is explained by mineral-specific binding rather than surface area differences. Corresponding simulated adsorbate conformations at the water–mineral interfaces are proposed. Overall, our findings provide new insights on the catalytic recycling of organic phosphorus species by mineral oxides.

58 GEOSCIENCES↗

A Multiple Filter Based Neural Network Approach to the Extrapolation of Adsorption Energies on Metal Surfaces for Catalysis Applications

Computational catalyst discovery involves the development of microkinetic reactor models based on estimated parameters determined from density functional theory (DFT). For complex surface chemistries, the number of reaction intermediates can be very large, and the cost of calculating the adsorption energies by DFT for all surface intermediates even for one active site model can become prohibitive. In this paper, we have identified appropriate descriptors and machine learning models that can be used to predict a significant part of these adsorption energies given data on the rest of them. Furthermore, our investigations also included the case when the species data used to train the predictive model are of different size relative to the species the model tries to predict—this is an extrapolation in the data space which is typically difficult with regular machine learning models. Due to the relative size of the available data sets, we have attempted to extrapolate from the larger species to the smaller ones in the current work. Here, we have developed a neural network based predictive model that combines an established additive atomic contribution based model with the concepts of a convolutional neural network that, when extrapolating, achieves a statistically significant improvement over the previous models.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Roles for epigenetics in wood formation and stress response intrees–from basic biology to forest management

Annual model and crop species have been the subject of most epigenetic studies for plants. In contrast to annuals, forest trees persist on natural landscapes and experience environmental variation within and across seasons, years, and decades or even centuries. Most forest trees species are undomesticated and typically grown on variable landscapes with no irrigation or application of agricultural chemicals. Forest trees must thus rely on their inherent ability to alter growth and physiology to mitigate the effects of changing abiotic and biotic stressors. Like other plants, trees have mechanisms encoded in their genomic DNA sequence that can respond directly to stress events such as drought or heat. Hypothetically, it would be highly advantageous to join these mechanisms with a dynamic “memory” of past exposure to stress. It is now well established that annual model and crop plants can establish epigenetic-based memory of stress events that support more rapid and robust response to stress in the future. Here, evidence is discussed for epigenetic regulation and “memory” in two fundamental biological processes in trees, wood formation and abiotic stress response. Wood formation is an ideal trait for epigenetic research in trees, as wood formation is highly responsive to environmental conditions and includes multiple rapid developmental changes as cells adopt distinct fates within complex tissues. This is followed by a discussion of research needs that would provide the foundation for new epigenetic applications for forestry.

Groover, Andrew↗

The Role of Composition and Surface Area Variability in Ice Nucleation, and How to Get Rid of It

Ice nucleation active site densities and nucleation rates are commonly determined by measuring the fraction of droplets that freeze at different temperatures. In analysing these experiments it is commonly assumed that variability in the immersed particle surface area and composition within a sample can be neglected, allowing a simple parameterization of ice nucleation efficiencies. Here it is shown that these approximations may result in large error, and translate into a bias in estimated active site densities of about six orders of magnitude. When applied in cloud models it may represent up to 5 K error in cloud glaciation temperature. A solution to this enduring problem is proposed for the first time. It is shown that by performing droplet freezing experiments varying mean particle surface area along with the temperature such a bias can be quantitatively removed. This amounts to differentiating the "freezing rate'' from the ice nucleation coefficient, or, the apparent and the actual active site density of a material. The proposed method will contribute to reduce existing uncertainties in the relative strength of the ice nucleation ability of different aerosol species, and the modeling of mixed-phase clouds.

Barahona, Donifan↗