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DOE OSTI2024

MDLoader: A Hybrid Model-Driven Data Loader for Distributed Graph Neural Network Training

Scalable data management is essential for processing large scientific dataset on HPC platforms for distributed deep learning. In-memory distributed storage is preferred for its speed, enabling rapid, random, and frequent data access required by stochastic optimizers. Processes use one-sided or collective communication to fetch remote data, with optimal performance depending on (i) dataset characteristics, (ii) training scale, and (iii) interconnection network. Empirical analysis shows collective communication excels with larger mini-batch sizes and/or fewer processes, whereas one-sided communication outperforms at larger scales. We propose MDLoader, a hybrid in-memory data loader for distributed graph neural network training. MDLoader features a model-driven performance estimator that dynamically selects between one-sided and collective communication at the beginning of training using Tree of Parzen Estimators (TPE). Evaluations on NERSC Perlmutter and OLCF Summit show MDLoader outperforms single-backend loaders by up to 2.83 × and predicts the suitable communication method with 96.3% (Perlmutter) and 94.3% (Summit) success rate.

Bae, Jonghyun↗

DOE OSTI2024

Odor exposure during imprinting periods increases odorant-specific sensitivity and receptor gene expression in coho salmon ( Oncorhynchus kisutch )

ABSTRACT Pacific salmon are well known for their homing migrations; juvenile salmon learn odors associated with their natal streams prior to seaward migration, and then use these retained odor memories to guide them back from oceanic feeding grounds to their river of origin to spawn several years later. This memory formation, termed olfactory imprinting, involves (at least in part) sensitization of the peripheral olfactory epithelium to specific odorants. We hypothesized that this change in peripheral sensitivity is due to exposure-dependent increases in the expression of odorant receptor (OR) proteins that are activated by specific odorants experienced during imprinting. To test this hypothesis, we exposed juvenile coho salmon, Oncorhynchus kisutch, to the basic amino acid odorant l-arginine during the parr–smolt transformation (PST), when imprinting occurs, and assessed sensitivity of the olfactory epithelium to this and other odorants. We then identified the coho salmon ortholog of a basic amino acid odorant receptor (BAAR) and determined the mRNA expression levels of this receptor and other transcripts representing different classes of OR families. Exposure to l-arginine during the PST resulted in increased sensitivity to that odorant and a specific increase in BAAR mRNA expression in the olfactory epithelium relative to other ORs. These results suggest that specific increases in ORs activated during imprinting may be an important component of home stream memory formation and this phenomenon may ultimately be useful as a marker of successful imprinting to assess management strategies and hatchery practices that may influence straying in salmon.

Dittman, Andrew H. (ORCID:000000016482359X)↗

DOE OSTI2011

Dynamic Time-Variant Connection Management for PGAS Models on InfiniBand

InfiniBand (IB) has established itself as a promising network infrastructure for high-end cluster computing systems as evidenced by its usage in the Top500 supercomputers today. While the IB standard describes multiple communication models (including reliable-connection (RC), and unreliable datagram (UD)), most of its promising features such as remote direct memory access (RDMA), hardware atomics and network fault tolerance are only available for the RC model which requires connections between communicating process pairs. In the past, several researchers have proposed on-demand connection management techniques that establish connections when there is a need to communicate, and not before. While such techniques work well for algorithms and applications that only communicate with a small set of processes in their life-time, there exists a broad set of applications that do not follow this trend. For example, applications that perform dynamic load balancing and adaptive work stealing have a small set of communicating neighbors at any given time, but over time the total number of neighbors can be very high; in some cases, equal to the entire system size. In this paper, we present a dynamic time-variant connection management approach that establishes connections on-demand like previous approaches, but further intelligently tears down some of the unused connections as well. While connection tear-down itself is relevant for any programming model, different models have different complexities. In this paper, we study the Global Arrays (GA) PGAS model for two reasons: (1) the simple one-sided communication primitives provided by GA and other PGAS models ensure that connection requests are always initiated by the origin process without explicit synchronization with the target process---this makes connection tear-down simpler to handle; and (2) GA supports several applications that demonstrate this behavior making it an obvious first target for the proposed enhancements. We evaluate our proposed approach using several micro-benchmarks as well as the NWChem computational chemistry application on more than 6000 processes, and show that our approach can significantly reduce the memory requirements of the communication library while maintaining its performance. To the best of our knowledge, this is the first design, implementation and evaluation of connection tear-down protocols over InfiniBand.

99 GENERAL AND MISCELLANEOUS↗

DOE OSTI2020

Automated Cloud Based Long Short-Term Memory Neural Network Based SWE Prediction

Snow derived water is a critical component of the US water supply. Measurements of the Snow Water Equivalent (SWE) and associated predictions of peak SWE and snowmelt onset are essential inputs for water management efforts. This paper aims to develop an integrated framework for real-time data ingestion, estimation, prediction and visualization of SWE based on daily snow datasets. In particular, we develop a data-driven approach for estimating and predicting SWE dynamics using the Long Short-Term Memory neural network (LSTM) method. Our approach uses historical datasets (precipitation, air temperature, SWE, and snow thickness) collected at NRCS Snow Telemetry (SNOTEL) stations to train the LSTM network and current year data to predict SWE behavior. The performance of our prediction was compared for different prediction dates and prediction training datasets. Our results suggest that the proposed LSTM network can be an efficient tool for forecasting the SWE timeseries, as well as Peak SWE and snowmelt timing. Results showed that the window size impacts the model performance (where the Nash Sutcliffe efficiency (NSE) ranged from 0.96 to 0.85 and the Rooted Mean Square Error (RMSE) ranged from 0.038 to 0.07) with an optimum number that should be calibrated for different stations and climate conditions. In addition, by implementing the LSTM prediction capability in a cloud based site-monitoring platform, we automate model-data integration. By making the data accessible through a graphical web interface and an underlying API which exposes both training and prediction capabilities. The associated results can be made easily accessible to a broad range of stakeholders.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1997

Computational Models of Human Performance: Validation of Memory and Procedural Representation in Advanced Air/Ground Simulation

The Man-Machine Interaction Design and Analysis System (MIDAS) under joint U.S. Army and NASA cooperative is intended to assist designers of complex human/automation systems in successfully incorporating human performance capabilities and limitations into decision and action support systems. MIDAS is a computational representation of multiple human operators, selected perceptual, cognitive, and physical functions of those operators, and the physical/functional representation of the equipment with which they operate. MIDAS has been used as an integrated predictive framework for the investigation of human/machine systems, particularly in situations with high demands on the operators. We have extended the human performance models to include representation of both human operators and intelligent aiding systems in flight management, and air traffic service. The focus of this development is to predict human performance in response to aiding system developed to identify aircraft conflict and to assist in the shared authority for resolution. The demands of this application requires representation of many intelligent agents sharing world-models, coordinating action/intention, and cooperative scheduling of goals and action in an somewhat unpredictable world of operations. In recent applications to airborne systems development, MIDAS has demonstrated an ability to predict flight crew decision-making and procedural behavior when interacting with automated flight management systems and Air Traffic Control. In this paper, we describe two enhancements to MIDAS. The first involves the addition of working memory in the form of an articulatory buffer for verbal communication protocols and a visuo-spatial buffer for communications via digital datalink. The second enhancement is a representation of multiple operators working as a team. This enhanced model was used to predict the performance of human flight crews and their level of compliance with commercial aviation communication procedures. We show how the data produced by MIDAS compares with flight crew performance data from full mission simulations. Finally, we discuss the use of these features to study communication issues connected with aircraft-based separation assurance.

Corker, Kevin M.↗

NASA NTRS1996

Man-Machine Interaction Design and Analysis System (MIDAS): Memory Representation and Procedural Implications for Airborne Communication Modalities

The Man-Machine Interaction Design and Analysis System (MIDAS) has been under development for the past ten years through a joint US Army and NASA cooperative agreement. MIDAS represents multiple human operators and selected perceptual, cognitive, and physical functions of those operators as they interact with simulated systems. MIDAS has been used as an integrated predictive framework for the investigation of human/machine systems, particularly in situations with high demands on the operators. Specific examples include: nuclear power plant crew simulation, military helicopter flight crew response, and police force emergency dispatch. In recent applications to airborne systems development, MIDAS has demonstrated an ability to predict flight crew decision-making and procedural behavior when interacting with automated flight management systems and Air Traffic Control. In this paper we describe two enhancements to MIDAS. The first involves the addition of working memory in the form of an articulatory buffer for verbal communication protocols and a visuo-spatial buffer for communications via digital datalink. The second enhancement is a representation of multiple operators working as a team. This enhanced model was used to predict the performance of human flight crews and their level of compliance with commercial aviation communication procedures. We show how the data produced by MIDAS compares with flight crew performance data from full mission simulations. Finally, we discuss the use of these features to study communications issues connected with aircraft-based separation assurance.

Corker, Kevin M.↗

DOE OSTI2023

OLCF Summit Supercomputer GPU Snapshots During Double-Bit Errors and Normal Operations

As we move into the exascale era, the power and energy footprints of high-performance computing (HPC) systems have grown significantly larger. Due to the harsh power and thermal conditions the system, components are exposed to extreme operating conditions. Operation of such modern HPC systems requires deep insights into long term system behavior to maintain its efficiency as well as its longevity. To help the HPC community to gain such insights, we provide double-bit errors using system telemetry data and logs collected from the Summit supercomputer, equipped with 27,648 Tesla V100 GPUs with 2nd-generation high-bandwidth memory (HBM2). The dataset relies on Nvidia XID records internally collected by GPU firmware at the time of failure occurrence, on the reboot-time logs of each Summit node, on node-level job scheduler records collected after each job termination, and on a 1Hz data rate from the baseboard management controllers (BMCs) of each Summit compute node using the OpenBMC event subscription protocol. Technical details can be found in the paper Oles et. al “Understanding GPU Memory Corruption at Extreme Scale: The Summit Case Study” ICS’24 (https://doi.org/10.1145/3650200.3656615).

97 MATHEMATICS AND COMPUTING↗

NASA NTRSDate not supplied

Medium-Range River Flood Forecasts Using a Long Short-Term Memory Network

River flooding and the impacts are a concern for decision makers throughout the United States. Accurate medium-range forecasts (~3-7 days) are critical for providing advanced outlooks to emergency management officials. Unfortunately, accurately forecasting rainfall-runoff and the subsequent rise and fall within rivers remain a challenge in hydrological modeling. While complex physical modeling systems are the standard for representing the hydrological processes, they are computationally demanding and can require extensive calibration. Further, uncertainties remain in the model parameters and input data. The use of machine learning can reduce some of the computational demand while maintaining high accuracy. Therefore, this project makes use of a Long Short-Term Memory (LSTM) network which explicitly accounts for the time-dependent nature of rainfall-runoff modeling. The developed LSTM was trained to predict river gauge height, or stage height, based on time-lagged input features which include: gauge height to initialize the model, the NASA Short-term Prediction Research and Transition Center’s instance of the Land Information System (SPoRT-LIS) relative soil moisture to describe the rainfall infiltration rate, and 6-hr Multi-Radar Multi-Sensor quantitative precipitation estimate (MRMS QPE). The developed LSTM based system is then used to produce 7-day forecasts with a 6-hr temporal resolution using three different quantitative precipitation forecasts (QPF) from the NWS’s Weather Prediction Center (WPC), the NCEP Global Forecast System (GFS) model and the National Blend of Models (NBM). This trained modeling system has been implemented as an experimental product at over 100 different rivers in collaboration with at multiple National Weather Service (NWS) Forecast Offices and River Forecast Centers (RFC) across the eastern half of the United States. The developed LSTM model achieved average Nash-Sutcliffe efficiency (NSE) 0.89 higher than the equivalent medium-range National Water Model ensemble member forecast over a 7-day forecast. In addition to the initial development and evaluation, this project has continued to expand. While the initial model was developed for precipitation dominated basins, expansion of the project has taken it to basins effected by snow melt. This presentation will provide an overview of the project with focus on recent developments on incorporating snow melt processes into the model.

Andrew T. White↗

DOE OSTI2017

Aspen-based performance and energy modeling frameworks

Now with the anticipation of exascale architectures, energy consumption is becoming one of the critical design parameters, especially in light of the energy budget of 20-30 Megawatts set by the U.S. Department of Energy. Understanding an application’s execution pattern and its energy footprint is critical to improving application operation on a diverse heterogeneous architecture. Applying application-specific performance optimization can consequently improve energy consumption. However, this approach is only applicable to current systems. As we enter a new era of exascale architectures that is projected to contain more complex memory hierarchies, increased levels of parallelism, heterogeneity in hardware, and complex programming models and techniques, energy and performance management is getting more cumbersome. We therefore propose techniques that predict the energy consumption beforehand or at runtime to enable proactive tuning. Such energy prediction approaches must be generic and adapt themselves at runtime to changing application and hardware configurations. Most existing energy estimation and prediction approaches are empirical in nature and thus tied to current systems. To overcome this limitation, we propose two energy estimation techniques: ACEE (Algorithmic and Categorical Energy Estimation), which uses a combination of analytical and empirical modeling techniques; and AEEM (Aspen’s Embedded Energy Estimation), a system-level analytical energy estimation technique. Both of these models incorporate the Aspen domain specific language for performance modeling. We present the methodologies of these two models and test their accuracy using five proxy applications. We also describe three use cases.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1977

SPAR: Structural-performance analysis and redesign

System of processor programs performs stress, buckling, and vibrational analysis of large linear finite element systems in excess of 50,000 degrees of freedom, while minimizing processing cost, execution time, central memory storage, and secondary data storage requirements. Programs use sparse matrix solution techniques and other computational and data management procedures.

Whetstone, W. D.↗

NASA NTRS1980

Optical mass memory system (AMM-13). AMM/DBMS interface control document

The baseline for external interfaces of a 10 to the 13th power bit, optical archival mass memory system (AMM-13) is established. The types of interfaces addressed include data transfer; AMM-13, Data Base Management System, NASA End-to-End Data System computer interconnect; data/control input and output interfaces; test input data source; file management; and facilities interface.

Bailey, G. A.↗

NASA NTRS1985

Man-machine interface and control of the shuttle digital flight system

The space shuttle main engine (SSME) presented new requirements in the design of controls for large pump fed liquid rocket engine systems. These requirements were the need for built in full mission support capability, and complexity and flexibility of function not previously needed in this type of application. An engine mounted programmable digital control system was developed to meet these requirements. The engine system and controller and their function are described. Design challenges encountered during the course of development included accommodation for a very severe engine environment, the implementation of redundancy and redundancy management to provide fail operational/fail safe capability, removal of heat from the package, and significant constraints on computer memory size and processing time. The flexibility offered by programmable control reshaped the approach to engine design and development and set the pattern for future controls development in these types of applications.

Burghduff, R. D.↗

NASA NTRS1994

Directions in parallel programming: HPF, shared virtual memory and object parallelism in pC++

Fortran and C++ are the dominant programming languages used in scientific computation. Consequently, extensions to these languages are the most popular for programming massively parallel computers. We discuss two such approaches to parallel Fortran and one approach to C++. The High Performance Fortran Forum has designed HPF with the intent of supporting data parallelism on Fortran 90 applications. HPF works by asking the user to help the compiler distribute and align the data structures with the distributed memory modules in the system. Fortran-S takes a different approach in which the data distribution is managed by the operating system and the user provides annotations to indicate parallel control regions. In the case of C++, we look at pC++ which is based on a concurrent aggregate parallel model.

Bodin, Francois↗

NASA NTRSDate not supplied

Advanced eLectrical Bus (ALBus) CubeSat: From Build to Flight

Advanced eLectrical Bus (ALBus) CubeSat is a technology demonstration mission of a 3-U CubeSat with an advanced digitally controlled electrical power system and novel use of Shape Memory Alloy (SMA) technology for reliable deployable solar array mechanisms. The primary objective was to advance the power management and distribution (PMAD) capabilities to enable future missions requiring more flexible and reliable power systems with higher output power capabilities. Goals included demonstration of 100W distribution to a target electrical load, response to continuous and fast transient power requirements, and exhibition of reliable deployment of solar arrays and antennas utilizing re-settable SMA mechanisms. The power distribution function of the ALBus PMAD system is unique in the total power to target load capability, as power is distributed from batteries to provide 100W of power directly to a resistive load. The deployable solar arrays utilize NASA’s Nickel-Titanium-Palladium-Platinum (NiTiPdPt) high-temperature SMAs for the retention and release mechanism, and a superelastic binary NiTi alloy for the hinge component. The project launched as part of the CubeSat Launch Initiative (CLI) Educational Launch of Nanosatellites (ELaNa) XIX mission on Rocket Lab’s Electron in December 2018. This paper summarizes the final launched design and the lessons learned from build to flight.

Deboshri Sadhukhan↗

DOE OSTI2022

Feasibility Study of Millimeter Wave Radars For Safeguards Applications

Containment and surveillance are fundamental measures in nuclear safeguards. Techniques such as video surveillance and laser curtain for containment provide effective monitoring in areas where maintaining continuity of knowledge is required. These systems, however, can be susceptible to loss of monitoring capabilities under certain environmental conditions such as poor visibility (i.e. low light conditions, smoke, fog, etc.) or extended power loss past the duration that the backup power system is designed for. Brookhaven National Laboratory has been investigating the feasibility of millimeter waves (mmWave) as a new perimeter seal in which radio frequency waves in the range of 60-64 GHz are used to detect and monitor objects of interest. Signals in this frequency range are not susceptible to environmental conditions. For proof-of-concept tests, mmWave sensors from Texas Instruments (TI), specificallyIWR6843, are used in a test bed at BNL's Waste Management facility to simulate the operations at nuclear facilities. The unique design of TI mmWave sensors requires less memory and power consumption compared to counterpart systems. These devices are capable of exporting 3D point-cloud data, which is visualized graphically and compared to videos recorded at the same time to validate the performance of the mmWave sensor. A set of experiments were planned to test the feasibility of the mmWave in this application, including monitoring static containers in a storage area and detecting intrusions at the boundaries of the area. In addition, the experiments also identify potential blind spots relative to sensor position and utilize multiple operating sensors simultaneously to reduce or eliminate such blind spots. The optimal positioning of multiple sensors was determined for the experimental room configuration. In this paper, we will discuss the details of this novel perimeter sealing concept and present the test results.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

NASA NTRSDate not supplied

Experimental Characterization of Additively Manufactured Nickel-Titanium Shape Memory Alloy Heat Pipes

Shape memory alloys (SMA) have been identified for use in spacecraft components as replacement for conventional deployment mechanisms. They may be used in thermal management components such as radiators to create self-deploying radiators. One SMA, NiTi, has also been developed for additive manufacturing processes. Heat pipes are a common way to create highly effective and lightweight spaceflight radiators, and heat pipes can also be made from NiTi and related alloys. The wick is the critical element of a functioning heat pipe, and recent progress over the past years has led to the development of additively manufactured heat pipe wicks in various materials. The combination of these efforts is the focus of this project: creating an additively manufactured, shape memory alloy self-deploying heat pipe radiator. This paper will focus on the experimental characterization of these additively manufactured NiTi heat pipes. The heat pipe coupons were additively manufactured by direct metal laser sintering (DMLS), with an integral liquid cooled condenser. Heat is input to the heat pipe via a thin film heater. Thermocouples were spot welded to the heat pipes to measure temperature at several axial locations. The heat pipes were tested with two working fluids: water and ethanol. Ethanol is not an ideal working fluid for heat pipes but is useful in characterizing them because it wets well to a wide variety of surfaces. Water is in general a superior working fluid for heat pipes, but its contact angle and therefore wicking performance strongly depends on the surface chemistry of the surface it is in contact with. A particular measurement of interest in this test is the evaporator to condenser thermal conductance, which will be compared in the full paper to recently published correlations for additively manufactured heat pipes. Experimental results for two straight geometry and one bellows geometry heat pipe will be presented. The bellows geometry is of interest for condenser of the self-deploying radiator design.

Additive manufacturing↗

DOE OSTI2018

RAM as a Network Managed Resource

This paper describes an architecture for and several application examples of using a dynamically allocable RAM pool over the network as part of a deep memory hierarchy. We present four different use cases, including in situ analysis, machine learning, quantum chemistry simulations, and virtualization. In each use case, we modified or implemented software to use a network RAM pool, and then evaluated the performance. The cases of in situ analysis, machine learning, and virtualization demonstrated good performance. While the quantum chemistry experiments exhibited an average slowdown of 53% for all runs, including those where resources were clearly oversubscribed, the scalability results showed promise.

Allcock, William↗

DOE OSTI2019

Preemptive cache management policies for processing units

A processing system includes at least one central processing unit (CPU) core, at least one graphics processing unit (GPU) core, a main memory, and a coherence directory for maintaining cache coherence. The at least one CPU core receives a CPU cache flush command to flush cache lines stored in cache memory of the at least one CPU core prior to launching a GPU kernel. The coherence directory transfers data associated with a memory access request by the at least one GPU core from the main memory without issuing coherence probes to caches of the at least one CPU core.

Kayiran, Onur↗