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At least 415 records · Page 23
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Trade-Offs in Phosphorus Acquisition Strategies of Five Common Tree Species in a Tropical Forest of Puerto Rico

Tree species that are successful in tropical lowlands have different acquisition strategies to overcome soil phosphorus (P) limitations. Some of these strategies belowground include adjustments in fine-root traits, such as morphology, architecture, association with arbuscular mycorrhizal fungi, and phosphatase activity. Trade-offs among P-acquisition strategies are expected because of their respective carbon cost. However, empirical evidence remains scarce which hinders our understanding of soil P-acquisition processes in tropical forests. Here, we measured seven fine-root functional traits related to P acquisition of five common tree species in three sites of the Luquillo Experimental Forest in Puerto Rico. We then described species-specific P-acquisition strategies and explored the changes in fine-root trait expression from 6 months before to 6 months after two consecutive hurricanes, Irma and María, passed over the island. We found that variations in root trait expression were driven mainly by the large interspecific differences across the three selected sites. In addition, we revealed a trade-off between highly colonized fine roots with high phosphatase activity and fine roots that have a high degree of branching. Furthermore, the former strategy was adopted by pioneer species ( Spathodea campanulata and Cecropia schreberiana ), whereas the latter was adopted by non-pioneer species (mostly Dacryodes excelsa and Prestoea montana ). Additionally, we found that root trait expression did not change comparing 6 months before and after the hurricanes, with the exception of root phosphatase activity. Altogether, our results suggest a combination of structural and physiological root traits for soil P acquisition in P-poor tropical soils by common tropical tree species, and show stability on most of the root trait expression after hurricane disturbances.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2012

Soil Carbon and Nutrient Changes Associated with Deforestation for Pasture in Southern Costa Rica

We assessed the effects of deforestation on soil carbon (C) and nutrient stocks in the premontane landscape near Las Cruces Biological Station in southern Costa Rica, where forests were cleared for pasture in the mid-1960s. We excavated six soil pits to a depth of 1 m in both pasture and primary forest, and found that C stocks were ~20 kg C per square meters in both settings. Nevertheless, soil delta C-13 suggests ~50 percent of the forest-derived soil C above 40 cm depth has turned over since deforestation. Soil nitrogen (N) and phosphorus (P) stocks derived from the soil pits were not significantly different between land uses (P = 0.43 and 0.61, respectively). At a larger spatial scale, however, the ubiquity of ruts produced by cattle-induced erosion indicates that there are substantial soil effects of grazing in this steep landscape. Ruts averaged 13 cm deep and covered ~45 percent of the landscape, and thus are evidence of the removal of 0.7 Mg C/ ha/yr, and 70, 9 and 40 kg/ha/yr of N, P and potassium (K), respectively. Subsoils in this region are ~10 times less C- and N-rich, and ~2 times less P- and K-rich than the topsoil. Thus, rapid topsoil loss may lead to a decline in pasture productivity in the coming decades. These data also suggest that the soil C footprint of deforestation in this landscape may be determined by the fate of soil C as it is transported downstream, rather than C turnover in situ.

soil carbon↗
DOE OSTI2024

Variation in forest root image annotation by experts, novices, and AI

Abstract Background The manual study of root dynamics using images requires huge investments of time and resources and is prone to previously poorly quantified annotator bias. Artificial intelligence (AI) image-processing tools have been successful in overcoming limitations of manual annotation in homogeneous soils, but their efficiency and accuracy is yet to be widely tested on less homogenous, non-agricultural soil profiles, e.g., that of forests, from which data on root dynamics are key to understanding the carbon cycle. Here, we quantify variance in root length measured by human annotators with varying experience levels. We evaluate the application of a convolutional neural network (CNN) model, trained on a software accessible to researchers without a machine learning background, on a heterogeneous minirhizotron image dataset taken in a multispecies, mature, deciduous temperate forest. Results Less experienced annotators consistently identified more root length than experienced annotators. Root length annotation also varied between experienced annotators. The CNN root length results were neither precise nor accurate, taking ~ 10% of the time but significantly overestimating root length compared to expert manual annotation ( p = 0.01). The CNN net root length change results were closer to manual ( p = 0.08) but there remained substantial variation. Conclusions Manual root length annotation is contingent on the individual annotator. The only accessible CNN model cannot yet produce root data of sufficient accuracy and precision for ecological applications when applied to a complex, heterogeneous forest image dataset. A continuing evaluation and development of accessible CNNs for natural ecosystems is required.

Handy, Grace↗
DOE OSTI2021

Manganese uptake by red maples in response to mineral dissolution rates in soil

Manganese (Mn) is an essential plant micronutrient that influences photosynthesis, ecosystem productivity, and soil carbon storage. Our objective was to quantify how Mn uptake by forest vegetation relates to Mn release into soil solution through mineral dissolution. In this work, a greenhouse pot experiment was conducted to quantify Mn uptake by red maple saplings as a function of mineral solubility to test whether Mn uptake was limited by the supply of Mn to soil solution. Differences in soil microbial community composition between treatments, particularly amongst Mn cycling bacteria and fungi, were also evaluated to assess potential microbial impacts on observed Mn fluxes. Plant Mn uptake was highest in systems supplied with dissolved Mn(II) because it was not kinetically limited by mineral weathering. Mn uptake was also higher in systems supplied with a fast-weathering substrate (shale containing Mn(II)-bearing pyrite) than a slow-weathering substrate (Mn(IV)-oxide). However, vegetation accumulated a decreasing proportion of available Mn with increasing solubility, indicating that uptake was tempered relative to solubility. The presence of bacterial phyla containing known Mn-oxidizing bacteria indicates the potential for Mn-oxidizing bacteria to influence Mn solubility within Mn-oxide and dissolved Mn treatments. A relatively low abundance of these bacteria points to their limited capacity to oxidize and retain Mn in the shale treatments, consistent with substantial Mn leaching. We conclude that Mn uptake was primarily controlled by dissolution rates of Mn-bearing minerals but modified by biological processes. The quantitative framework presented here can guide understanding of how biogeochemical processes control element cycling between plants and soils.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Arbuscular Mycorrhizal Tree Communities Have Greater Soil Fungal Diversity and Relative Abundances of Saprotrophs and Pathogens than Ectomycorrhizal Tree Communities

Trees associating with different mycorrhizas often differ in their effects on litter decomposition, nutrient cycling, soil organic matter (SOM) dynamics, and plant-soil interactions. For example, due to differences between arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) tree leaf and root traits, ECM-associated soil has lower rates of C and N cycling and lower N availability than AM-associated soil. These observations suggest that many groups of nonmycorrhizal fungi should be affected by the mycorrhizal associations of dominant trees through controls on nutrient availability. To test this overarching hypothesis, we explored the influence of predominant forest mycorrhizal type and mineral N availability on soil fungal communities using next-generation amplicon sequencing. Soils from four temperate hardwood forests in southern Indiana, United States, were studied; three forests formed a natural gradient of mycorrhizal dominance (100% AM tree basal area to 100% ECM basal area), while the fourth forest contained a factorial experiment testing long-term N addition in both dominant mycorrhizal types. We found that overall fungal diversity, as well as the diversity and relative abundance of plant pathogenic and saprotrophic fungi, increased with greater AM tree dominance. Additionally, tree community mycorrhizal associations explained more variation in fungal community composition than abiotic variables, including soil depth, SOM content, nitrification rate, and mineral N availability. Our findings suggest that tree mycorrhizal associations may be good predictors of the diversity, composition, and functional potential of soil fungal communities in temperate hardwood forests. These observations help explain differing biogeochemistry and community dynamics found in forest stands dominated by differing mycorrhizal types.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities

Most of Earth’s trees rely on critical soil nutrients that ectomycorrhizal fungi (EcMF) liberate and provide, and all of Earth’s land plants associate with bacteria that help them survive in nature. Yet, our understanding of how the presence of EcMF modifies soil bacterial communities, soil food webs, and root chemistry requires direct experimental evidence to comprehend the effects that EcMF may generate in the belowground plant microbiome. To this end, we grew Pinus muricata plants in soils that were either inoculated with EcMF and native forest bacterial communities or only native bacterial communities. We then profiled the soil bacterial communities, applied metabolomics and lipidomics, and linked omics data sets to understand how the presence of EcMF modifies belowground biogeochemistry, bacterial community structure, and their functional potential. We found that the presence of EcMF (i) enriches soil bacteria linked to enhanced plant growth in nature, (ii) alters the quantity and composition of lipid and non-lipid soil metabolites, and (iii) modifies plant root chemistry toward pathogen suppression, enzymatic conservation, and reactive oxygen species scavenging. Using this multi-omic approach, we therefore show that this widespread fungal symbiosis may be a common factor for structuring soil food webs.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Yeasts from temperate forests

Yeasts are ubiquitous in temperate forests. While this broad habitat is well-defined, the yeasts inhabiting it and their life cycles, niches, and contributions to ecosystem functioning are less understood. Yeasts are present on nearly all sampled substrates in temperate forests worldwide. They associate with soils, macroorganisms, and other habitats and no doubt contribute to broader ecosystem-wide processes. Researchers have gathered information leading to hypotheses about yeasts' niches and their life cycles based on physiological observations in the laboratory as well as genomic analyses, but the challenge remains to test these hypotheses in the forests themselves. Here, we summarize the habitat and global patterns of yeast diversity, give some information on a handful of well-studied temperate forest yeast genera, discuss the various strategies to isolate forest yeasts, and explain temperate forest yeasts' contributions to biotechnology. Here, we close with a summary of the many future directions and outstanding questions facing researchers in temperate forest yeast ecology. Yeasts present an exciting opportunity to better understand the hidden world of microbial ecology in this threatened and global habitat.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Quantifying spatial and vertical variations in soil C:N relationships in permafrost-affected landscapes

Permafrost regions are experiencing rapid changes that affect carbon (C) and nitrogen (N) cycles, with implications for vegetation dynamics and gas exchanges with the atmosphere. Soil C:N ratio is a key indicator of organic matter quality, yet spatial estimates of N stocks and C:N ratios lag behind those for C. We used quantile regression forests to compare direct and indirect digital soil mapping approaches for predicting soil C:N ratios at 0–30, 30–60, and 60–100 cm depths across a latitudinal transect in Alaska. The indirect approach – deriving C:N from separately predicted C and N stocks – outperformed direct mapping for the surface layer (0–30 cm), while direct mapping was marginally better at greater depths. However, prediction accuracy decreased with depth for both methods. Temperature and topography were the most important predictors. Both approaches overestimated low and underestimated high C:N ratios, with direct mapping showing greater bias. Our results underscore the challenges of modeling C:N ratios in heterogeneous, data-sparse permafrost soils, but also suggest that indirect mapping holds promise if supported by more extensive datasets.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil aggregate-mediated microbial responses to long-term warming

Soil microbial carbon use efficiency (CUE) is a combination of growth and respiration, which may respond differently to climate change depending on physical protection of soil carbon (C) and its availability to microbes. In a mid-latitude hardwood forest in central Massachusetts, 27 years of soil warming (+5 °C) has resulted in C loss and altered soil organic matter (SOM) quality, yet the underlying mechanisms remain unclear. In this work, we hypothesized that long-term warming reduces physical aggregate protection of SOM, microbial CUE, and its temperature sensitivity. Soil was separated into macroaggregate (250–2000 μm) and microaggregate (<250 μm) fractions, and CUE was measured with 18 O enriched water (H 2 18 O) in samples incubated at 15 and 25 °C for 24 h. We found that long-term warming reduced soil C and nitrogen concentrations and extracellular enzyme activity in macroaggregates, but did not affect physical protection of SOM. Long-term warming showed little effect on CUE or microbial biomass turnover time because it reduced both growth and respiration. However, CUE was less temperature sensitive in macroaggregates from the warmed compared to the control plots. Our findings suggest that microbial thermal responses to long-term warming occur mostly in soil compartments where SOM is less physically protected and thus more vulnerable to microbial degradation.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1997

Carbon in the Former Soviet Union: The Current Balance

This work has been carried out in a period of great changes in Russia that have brought extreme hardships to the scientific community. We have been fortunate in establishing excellent relationships with the Russian scientific community and believe we have helped to retain coherence in circumstances where the continuation of research was in doubt. We have learned much and have been effective in advancing, even establishing, scholars and programs in Russia that might not otherwise have survived the transition. The vigor of the International Boreal Forest Research Association (IBFRA) is one sign of the value and success of these activities. Largely due to the current political and economic transitions in the former Soviet Union, the forests of much of the FSU are under reduced logging pressure. In addition, there is a decline in air pollution as heavy industry has waned, at least for now. Russian forestry statistics and our personal experience indicate a decline, perhaps as high as 60%, in forest harvesting over the last few years. But, new international market pressures on the forests exist in European Russia and in the Far East. The central government, still the "owner" of Russian forests, is having difficulty maintaining control over forest use and management particularly in the Far East and among the southern territories that have large, nonRussian ethnic populations. Extraordinarily large areas of mixed forest and grasslands, sparse or open forests, and mixed forests and tundra must be considered when calculating forest area It is insufficient to think of Russia as simply forest and nonforest Forest productivity, measured as growth of timber, appears to be in decline in all areas of Russia except in European Russia. Most information and publications on the recent history of these forests is heavily dependent on statistical data from the Soviet era. The interpretation of these data is very much open to debate. Anatoly Shwidenko, a long term collaborator and former senior scientist (mensuration) for the Soviet Committee on Forests, now a scholar at the International Institute of Applied Systems Analysis (IIASA), Vienna, has provided abundant contributions from the data available to him and from his experience. Forest stand carbon is concentrated in the Russian Far East (i.e. Primorski Kray), Central-Southern Siberia and European Russia But, soil carbon can be 10 times forest stand C. Our efforts in mapping the area and changes in area (as well as the internal structure) of forests have made major contributions to our joint understanding of the scale and status of these forests. To realize the importance of this contribution one needs only to recognize that any large scale Soviet-era maps of the area did not include latitude and longitude. Even today, there is great reluctance to provide these data, the basis of any GIS.

Woodwell, G. M.↗
NASA NTRS1984

Relationship between forest clearing and biophysical factors in tropical environments: Implications for the design of a forest change monitoring approach

The relationship between forest clearing, biophysical factors (e.g, ecological zones, slope gradient, soils), and transportation network in Costa Rica was analyzed. The location of forested areas at four reference datas (1940, 1950, 1961, and 1977) as derived from aerial photography and LANDSAT MSS data was digitilized and entered into a geographically-referenced data base. Ecological zones as protrayed by the Holdridge Life Zone Ecology System, and the location of roads and railways were also digitized from maps of the entire country as input to the data base. Information on slope gradient and soils was digitized from maps of a 21,000 square kilometer area. The total area of forest cleared over four decades are related to biophysical factors was analyzed within the data base and deforestation rates and trends were tabulated. The relatiohship between forest clearing and ecological zone and the influence of topography, sils, and transportation network are presented and discussed.

Sader, S. A.↗
DOE OSTI2024

Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics (Blodgett, CA)

This dataset contains data on daily soil temperature, moisture and flux, and soil carbon stock and root biomass across a soil profile down to 100 cm depth at Blodgett Forest Research Station, CA, USA. These data were generated to determine if modeling of an experimental soil warming of 4C showed increased soil CO2 emissions and changes in bulk soil carbon stocks with depth consistent with field observations, as part of the study: Riley et al. (2025) Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics in Journal of Advances in Modeling Earth Systems. This research was performed within the framework of the TES Belowground Biogeochemistry SFA project, in particular association with a 1 m-deep experimental soil heating experiment at the University of California Blodgett Forest Research Station, California (120 ° 39′40′′W; 38 ° 54′43′′N). Continuous data were collected at the plot level, and bulk soil carbon and root biomass were sampled once a year from each plot from 0-100 cm, in 10 cm intervals. Measurements relevant to the current study include soil temperature and soil volumetric water content measured continuously at multiple depths in the top meter; fine root biomass and SOC stocks measured from annual soil cores. Soil flux was continuously monitored using a LI-8100 Automated CO2 Flux System in conjunction with the LI-8150 Multiplexer (Licor, Nebraska, USA). Soil flux was determined using SoilFluxPro software, with flux values showing an R² fit of less than 0.9 being excluded from the analysis. Data were collected from each paired plot (1-3): one control (C) and one heated (H).

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1992

Phase difference statistics related to sensor and forest parameters

The information content of ordinary synthetic aperture radar (SAR) data is principally contained in the radiometric polarization channels, i.e., the four Ihh, Ivv, Ihv and Ivh backscattered intensities. In the case of clutter, polarimetric information is given by the four complex degrees of coherence, from which the mean polarization phase differences (PPD), correlation coefficients or degrees of polarization can be deduced. For radiometric features, the polarimetric parameters are corrupted by multiplicative speckle noise and by some sensor effects. The PPD distribution is related to the sensor, speckle and terrain properties. Experimental results are given for the variation of the terrain hh/vv mean phase difference and magnitude of the degree of coherence observed on bare soil and on different pine forest stands.

Lopes, A.↗
DOE OSTI2024

Modeling Interactive Effects of Manganese Bioavailability, Nitrogen Deposition, and Warming on Soil Carbon Storage

Manganese (Mn) is a redox–active micronutrient that has been shown to accelerate plant litter decomposition; however, the effect of Mn–promoted decomposition on soil C storage is unclear. We present a novel biogeochemical model simulating how Mn bioavailability influences soil organic C (SOC) stocks in a soil profile (<50 cm) within a temperate forest. In our model, foliar Mn increased in response to increasing soluble Mn released through Mn–oxide (birnessite) dissolution in mineral soil layers. The ensuing Mn enrichment in leaf litter redistributed Mn to the surface forest floor layer, promoted enzymatic oxidation of lignin, and decreased SOC stocks. Total SOC loss was partially mitigated by accumulation of lignin–oxidation products as mineral–associated organic C. We also explored how Mn–driven changes to C storage interacted with effects of N deposition and warming. Nitrogen enrichment inhibited Mn–dependent lignin degradation, increasing SOC stocks and weakening their dependence on Mn bioavailability. Warming stimulated decomposition and reduced C stocks but was less effective at low Mn bioavailability. Our model results suggest that SOC stocks are sensitive to Mn bioavailability because increased plant uptake redistributes Mn to surface soils where it can enhance litter decomposition. Finally, based on our simulations, we predict that Mn becomes limiting to litter decomposition where Mn is poorly soluble. Depletion of bioavailable Mn or other cofactors that are critical to decomposition could limit the response of organic C stocks to warming over time, but quantitative projections of the role of Mn bioavailability in regulating decomposition requires additional measurements to constrain model uncertainties.

58 GEOSCIENCES↗
DOE OSTI2020

Back to Roots: The Role of Ectomycorrhizal Fungi in Boreal and Temperate Forest Restoration

Temperate and boreal forests are increasingly suffering from anthropic degradation. Ectomycorrhizal fungi (EMF) are symbionts with most temperate and boreal forest trees, providing their hosts with soil nutrients and water in exchange for plant carbon. This group of fungi is involved in woody plants’ survival and growth and helps plants tolerate harsh environmental conditions. Here, we describe the current understanding of how EMF can benefit temperate and boreal forest restoration projects. We review current evidence on promising restoration plans that actively use EMF in sites contaminated with heavy metals, affected by soil erosion, and degraded due to clearcut logging and wildfire. We discuss the potential role of this group of fungi for restoring sites invaded by non-native plant species. Additionally, we explore limitations, knowledge gaps, and possible undesired outcomes of the use of EMF in forest restoration, and we suggest how to further incorporate this fungal group into forest management. We conclude that considering EMF–host interactions could improve the chances of success of future restoration programs in boreal and temperate forests.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2012

Utilizing NASA Earth Observing System (EOS) Data to Determine Ideal Planting Locations for Wetland Tree Species in St. Bernard Parish, Louisiana

St. Bernard Parish, in southeast Louisiana, is rapidly losing coastal forests and wetlands due to a combination of natural and anthropogenic disturbances (e.g. subsidence, saltwater intrusion, low sedimentation, nutrient deficiency, herbivory, canal dredging, levee construction, spread of invasive species, etc.). After Hurricane Katrina severely impacted the area in 2005, multiple Non-Governmental Organizations (NGOs) have worked not only on rebuilding destroyed dwellings, but on rebuilding the ecosystems that once protected the citizens of St. Bernard Parish. Volunteer groups, NGOs, and government entities often work separately and independently of each other and use different sets of information to choose the best planting sites for coastal forests. Using NASA EOS, NRCS soil surveys, and ancillary road and canal data in conjunction with ground truthing, the team created maps of optimal planting sites for several species of wetland trees to aid in unifying these organizations, who share a common goal, under one plan. The methodology for this project created a comprehensive Geographic Information System (GIS) to help identify suitable planting sites in St. Bernard Parish. This included supplementing existing elevation data using LIDAR data and classifying existing land cover in the study area from ASTER multispectral satellite data. Low altitude AVIRIS hyperspectral imagery was used to assess the health of vegetation over an area near the intersection of the Mississippi River Gulf Outlet Canal (MRGO) and Bayou la Loutre. Historic extent of coastal forests was mapped using aerial photos from USGS collected between 1952 and 1956. The final products demonstrated the utility of combining NASA EOS with other geospatial data in assessing, monitoring, and restoring of coastal ecosystems in Louisiana. This methodology also provides a useful template for other ecological forecasting and coastal restoration applications.

Reahard, Ross↗
DOE OSTI2022

Amazonian terrestrial water balance inferred from satellite-observed water vapor isotopes

Atmospheric humidity and soil moisture in the Amazon forest are tightly coupled to the region’s water balance, or the difference between two moisture fluxes, evapotranspiration minus precipitation (ET-P). However, large and poorly characterized uncertainties in both fluxes, and in their difference, make it challenging to evaluate spatiotemporal variations of water balance and its dependence on ET or P. Here, we show that satellite observations of the HDO/H 2 O ratio of water vapor are sensitive to spatiotemporal variations of ET-P over the Amazon. When calibrated by basin-scale and mass-balance estimates of ET-P derived from terrestrial water storage and river discharge measurements, the isotopic data demonstrate that rainfall controls wet Amazon water balance variability, but ET becomes important in regulating water balance and its variability in the dry Amazon. Changes in the drivers of ET, such as above ground biomass, could therefore have a larger impact on soil moisture and humidity in the dry (southern and eastern) Amazon relative to the wet Amazon.

54 ENVIRONMENTAL SCIENCES↗