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At least 415 records · Page 23

Theoretical uncertainty quantification for heavy-ion fusion

Despite recent advances and focus on rigorous uncertainty quantification for microscopic models of quantum many-body systems, the uncertainty on the dynamics of those systems has been underexplored. To address this, we have used time-dependent Hartree-Fock to examine the model uncertainty for a collection of low-energy, heavy-ion fusion reactions. Fusion reactions at near-barrier energies represent a rich test-bed for the dynamics of quantum many-body systems owing to the complex interplay of collective excitation, transfer, and static effects that determine the fusion probability of a given system. The model uncertainty is sizable for many of the systems studied and the primary contribution arises from static properties that are ill-constrained, such as the neutron radius of neutron-rich nuclei. Furthermore, these large uncertainties motivate the use of information from reactions to better constrain existing models and to infer static properties from reaction data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Converting dark matter to dark radiation does not solve cosmological tensions

Tensions between cosmological parameters (in particular the local expansion rate H 0 and the amplitude of matter clustering S8) inferred from low-redshift data and data from the cosmic microwave background (CMB) and large-scale structure (LSS) experiments have inspired many extensions to the standard cosmological model, LCDM. Models which simultaneously lessen both tensions are of particular interest. We consider one scenario with the potential for such a resolution, in which some fraction of the dark matter has converted into dark radiation since the release of the CMB. Such a scenario encompasses and generalizes the more standard "decaying dark matter" model, allowing additional flexibility in the rate and time at which the dark matter converts into dark radiation. In this paper, we constrain this scenario with a focus on exploring whether it can solve (or reduce) these tensions. We find that such a model is effectively ruled out by CMB data, in particular by the reduced peak-smearing due to CMB lensing on the power spectrum and the excess integrated Sachs--Wolfe (ISW) signal caused by the additional dark energy density required to preserve flatness after dark matter conversion into dark radiation. Thus, such a model does not have the power to reduce these tensions without further modifications. This conclusion extends and generalizes related conclusions derived for the standard decaying dark matter model.

79 ASTRONOMY AND ASTROPHYSICS↗

Impact of dark matter on tidal signatures in neutron star mergers with the Einstein Telescope

If dark matter (DM) accumulates inside neutron stars (NS), it changes their internal structure and causes a shift of the tidal deformability from the value predicted by the dense-matter equation of state (EOS). In principle, this shift could be observable in the gravitational-wave (GW) signal of binary neutron star (BNS) mergers. We investigate the effect of fermionic, noninteracting DM when observing a large number of GW events from DM-admixed BNSs with the precision of the proposed Einstein telescope (ET). Specifically, we study the impact on the recovery of the baryonic EOS and whether DM properties can be constrained. For this purpose, we create event catalogs of BNS mock events with DM fraction up to 1%, from which we reconstruct the posterior uncertainties with the Fisher matrix approach. Using this data, we perform joint Bayesian inference on the baryonic EOS, DM particle mass, and DM particle fraction in each event. Here, our results reveal that when falsely ignoring DM effects, the EOS posterior is biased toward softer EOSs, though the offset is rather small. Further, we find that within our assumptions of our DM model and population, ET will likely not be able to test the presence of DM in BNSs, even when combining many events and adding Cosmic Explorer (CE) to the next-generation detector network. Likewise, the potential constraints on the DM particle mass will remain weak because of degeneracies with the fraction and EOS.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Method for Assessment of Security-Relevant Settings in Anomaly-Based Intrusion Detection for Industrial Control Systems

Ensuring the integrity of Ethernet-based networks is a challenging and constantly evolving domain. This problem is exacerbated for those operational technology (OT) networks supporting industrial control systems (ICS) since much of that equipment was originally designed to be on a network that was isolated and generally considered free of malefactors. Increasing pressure to bridge these systems with traditional information technology (IT) networks has introduced a bevy of new threats. In response, both academia and industry have responded with security solutions tailored to ICS environments. Deploying these protection systems often involves several configuration choices. While some of these choices are clear (e.g., block/enable protocol X) others are far more subjective (e.g. alert threshold == 3.43). Further complicating the situation, while often similar to IT networks, OT networks have unique challenges and characteristics that make the task of protecting them simultaneously more difficult and straight forward.Extant solutions for quantifying the relative security of intrusion detection systems fail to effectively support the operators of said systems with understanding the impact of various configuration changes. Further, they assume that the attacks are static and not subject to manipulation or alteration in the face of defenses. In this paper, we present a threat-based method for quantifying the relative impact of various security settings for intrusion detection systems (IDSs) within ICS environments. This method provides operational staff with a clear understanding of the relative impact of their settings and assumes that the attacks levied against them are dynamic. The model is described in detail, we apply the model to a synthetic data set, and discuss the inferences that can be made and what types of decisions they could be used to support.

Gillen, Rob↗

Novel Gloeobacterales spp. from Diverse Environments across the Globe

Photosynthetic Cyanobacteria and their descendants are the only known organisms capable of oxygenic photosynthesis. Their metabolism permanently changed the Earth’s surface and the evolutionary trajectory of life, but little is known about their evolutionary history. Genomes of the Gloeobacterales, an order of deeply divergent photosynthetic Cyanobacteria, may hold clues about the evolutionary process. However, there are only three published genomes within this order, and it is difficult to make broad inferences based on such little data. Here, I describe five species within the Gloeobacterales retrieved from publicly available databases and examine their photosynthetic gene content and the environments in which Gloeobacterales genomes and 16S rRNA gene sequences are found. The Gloeobacterales contain reduced photosystems and inhabit cold, wet-rock, and low-light environments. They are likely present in low abundances due to their low growth rate. Future searches for Gloeobacterales should target these environments, and samples should be deeply sequenced to capture the low-abundance taxa. Publicly available databases contain undescribed taxa within the Gloeobacterales. However, searching through all available data with current methods is computationally expensive. Therefore, new methods must be developed to search for these and other evolutionarily important taxa. Once identified, these novel photosynthetic Cyanobacteria will help illuminate the origin and evolution of oxygenic photosynthesis. Early branching photosynthetic Cyanobacteria such as the Gloeobacterales may provide clues into the evolutionary history of oxygenic photosynthesis, but there are few genomes or cultured taxa from this order. Five new metagenome-assembled genomes suggest that members of the Gloeobacterales all contain reduced photosystems and lack genes associated with thylakoids and circadian rhythms. Their distribution suggests that they may thrive in environments that are marginal for other species, including wet-rock and cold environments. These traits may aid in the discovery and cultivation of novel species in this clade.

59 BASIC BIOLOGICAL SCIENCES↗

Fast and Scalable FFT-Based GPU-Accelerated Algorithms for Block-Triangular Toeplitz Matrices with Application to Linear Inverse Problems Governed by Autonomous Dynamical Systems

In this work, we present an efficient and scalable algorithm for performing matrix-vector multiplications (matvecs) for block Toeplitz matrices. Such matrices, which are shift-invariant with respect to their blocks, arise in the context of solving inverse problems governed by autonomous systems, and time-invariant systems in particular. In this article, we consider inverse problems that infer unknown parameters from observational data of a linear time-invariant dynamical system given in the form of partial differential equations (PDEs). Matrix-free Newton-conjugate-gradient methods are often the gold standard for solving these inverse problems, but they require numerous actions of the Hessian on a vector. Matrix-free adjoint-based Hessian matvecs require solution of a pair of linearized forward/adjoint PDE solves per Hessian action, which may be prohibitive for large-scale inverse problems. Time invariance of the forward PDE problem leads to a block Toeplitz structure of the discretized parameter-to-observable (p2o) map defining the mapping from inputs (parameters) to outputs (observables) of the PDEs. This block Toeplitz structure enables us to exploit two key properties: (1) compact storage of the p2o map and its adjoint, and (2) efficient fast Fourier transform–based Hessian matvecs. The proposed algorithm is mapped onto large multi-GPU clusters and achieves more than 80% of peak bandwidth on NVIDIA A100 GPUs. Excellent weak scaling is shown for up to 48 A100 GPUs. For the targeted problems, the implementation executes Hessian matvecs within fractions of a second, which is orders of magnitude faster than can be achieved by conventional matrix-free Hessian matvecs via forward/adjoint PDE solves.

97 MATHEMATICS AND COMPUTING↗

A theoretical study on quasifission and fusion–fission processes in heavy-ion collisions

Despite recent advances and focus on rigorous uncertainty quantification for microscopic models of quantum many-body systems, the uncertainty on the dynamics of those systems has been underexplored. To address this, we have used time-dependent Hartree-Fock to examine the model uncertainty for a collection of low-energy, heavy-ion fusion reactions. Fusion reactions at near-barrier energies represent a rich test-bed for the dynamics of quantum many-body systems owing to the complex interplay of collective excitation, transfer, and static effects that determine the fusion probability of a given system. The model uncertainty is sizable for many of the systems studied and the primary contribution arises from static properties that are ill-constrained, such as the neutron radius of neutron-rich nuclei. These large uncertainties motivate the use of information from reactions to better constrain existing models and to infer static properties from reaction data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Investigating effects of soil chemicals on density of small mammal bioindicators using spatial capture-recapture models

Monitoring the ecological impacts of environmental pollution and the effectiveness of remediation efforts requires identifying relationships between contaminants and the disruption of biological processes in populations, communities, or ecosystems. Wildlife are useful bioindicators, but traditional comparative experimental approaches rely on a staunch and typically unverifiable assumption that, in the absence of contaminants, reference and contaminated sites would support the same densities of bioindicators, thereby inferring direct causation from indirect data. We demonstrate the utility of spatial capture-recapture (SCR) models for overcoming these issues, testing if community density of common small mammal bioindicators was directly influenced by soil chemical concentrations. By modeling density as an inhomogeneous Poisson point process, we found evidence for an inverse spatial relationship between Peromyscus density and soil mercury concentrations, but not other chemicals, such as polychlorinated biphenyls, at a site formerly occupied by a nuclear reactor. Although the coefficient point estimate supported Peromyscus density being lower where mercury concentrations were higher (β = –0.44), the 95% confidence interval overlapped zero, suggesting no effect was also compatible with our data. Estimated density from the most parsimonious model (2.88 mice/ha; 95% CI = 1.63–5.08), which did not support a density-chemical relationship, was within the range of reported densities for Peromyscus that did not inhabit contaminated sites elsewhere. Environmental pollution remains a global threat to biodiversity and ecosystem and human health, and our study provides an illustrative example of the utility of SCR models for investigating the effects that chemicals may have on wildlife bioindicator populations and communities.

36 MATERIALS SCIENCE↗

Array-Based Seismic Measurements of OSIRIS-REx’s Re-Entry

The return home of the OSIRIS-REx spacecraft in September 2023 marked only the fifth time that an artificial object entered the Earth’s atmosphere at interplanetary velocities. Although rare, such events serve as valuable analogs for natural meteoroid re-entries; enabling study of hypersonic dynamics, shock wave generation, and acoustic-to-seismic coupling. Here, in this study, we report on the signatures recorded by a dense (100 m scale) 11-station array located almost directly underneath the capsule’s point of peak atmospheric heating in northern Nevada. Seismic data are presented, which allow inferences to be made about the shape of the shock wave’s footprint on the surface, the capsule’s trajectory, and its flight parameters.

58 GEOSCIENCES↗

Improving Subsurface Stress Characterization for Carbon Dioxide Storage Projects

Researchers at New Mexico Tech, Los Alamos National Laboratory (LANL), Sandia National Laboratory (SNL), and other collaborators are developing a methodology to improve characterization of stress in the subsurface by means of a model-based inversion of reservoir engineering data, time lapse seismic measurements, and microseismicity. Historically, various geophysical techniques have been used in efforts to understand the state of stress in the subsurface through direct and indirect imaging of stress sensitive features (faults and fractures) and observations of transient stress related observations (time variant elastic moduli and microseismicity). Standard direct and indirect techniques for seismic fault and fracture imaging suffer from detectability limits due to reliance on high data quality and multiplicity. Variations in effective elastic properties from inversion of high quality seismic (Vertical Seismic Profile (VSP)) data may be used to infer stress near the wellbore through integration with independent experimental characterization of the stress-velocity relationship. Given a sufficiently robust observation network, microseismic emissions may be inverted to characterize focal mechanisms which, together with supporting assumptions and constraints, inform estimates of in-situ stress. While each of these techniques contributes in part to the characterization of stress within limited spatial and temporal domains, no one method provides an unambiguous stress measurement or a predictive capability over a site scale spatial extent. Challenges associated with solution non-uniqueness, measurement ambiguity, and irregular sampling may be greatly minimized through combination of one or more of independent measurements within a common framework in which realistic geological, hydrodynamic, geomechanical, and seismological constituent process models may act as constraints.

02 PETROLEUM↗

Weighted greedy-optimal design of computer experiments for kernel-based and Gaussian process model emulation and calibration

This article is concerned with the approximation of high-dimensional functions by kernel-based methods. Motivated by uncertainty quantification, which often necessitates the construction of approximations that are accurate with respect to a probability density function of random variables, we aim at minimizing the approximation error with respect to a weighted $L^p$-norm. We present a greedy procedure for designing computer experiments based upon a weighted modification of the pivoted Cholesky factorization. The method successively generates nested samples with the goal of minimizing error in regions of high probability. Numerical experiments validate that this new importance sampling strategy is superior to other sampling approaches, especially when used with non-product probability density functions. We also show how to use the proposed algorithm to efficiently generate surrogates for inferring unknown model parameters from data.

97 MATHEMATICS AND COMPUTING↗

Absorber Column CFD model validation against PNNL’s device-scale absorber column on the LCFS unit

Absorber column has been widely used for CO 2 capture in the coal-fired power plants. High-fidelity CFD models play an important role in absorber column design and solvents optimization, which help enhance the CO 2 capture efficiency and reduce the operation cost. This report provides a comprehensive description of the development of CFD absorber models at two different levels, the design and implementation of PNNL’s device-scale absorber column experiment, and the methodology to combine the CFD results, experiment data, and Aspen model for a better understanding of the interface area in packed column. A composite model is firstly proposed in the Discrete Element Method (DEM) packing process, which can model the complex geometry of various packing elements. This generates a realistic packing pattern and accurate packing porosity ε and specific area a p compared to the actual values for absorber column used in LCFS. Two level of CFD absorber models were developed, namely the full-size column model (FCM) to simulate the entire packed column with a focus on the wall/entrance effects, and the representative column model (RCM) to simulate a section of column with a focus on the sensitivity study of interface area. A Design of Experiment (DoE) plan was developed to guide the collection of 100 run CFD data and 12 experiment runs. The 100 CFD runs were carried out in the RCM with Pro-Pak packing and cover a wide operation range and solvent properties. Impact of influential factors on the interface area in packed column were investigated in details. The CFD interface area was then combined with the experimental data and Aspen model to infer some information of the effective contact angle in the column. The accuracy and uncertainties in the interface area and contact angle can be quantified.

01 COAL, LIGNITE, AND PEAT↗

New Physics in the Hot Electron Furnace (Final Report)

The primary purpose of this award was experiments and simulations related to the idea of a ‘Hot Electron Furnace’ where nonlocal heat transport would allow unique new experimental opportunities at x-ray free electron lasers. The period of this award included beamtime at the MEC endstation of the LCLS, and the execution of those experiments was a primary goal. Unfortunately, the beamtime had limited success due to (1) inability of the LCLS to deliver the expected two-color operations mode, and (2) failure of the MEC endstation’s own software to save the cavity timing data that would have allowed inference of time delays for the few hours when two-color mode briefly operated. The beamtime was then switched to operate in single-color (one pulse) mode, and studies were performed of x-ray heating and probe, simultaneously. Two interesting manuscripts are finally near submission, having been delayed by student graduations, need for collaborator simulations of x-ray heating processes, and then COVID. I am hopeful that they will soon be submitted (especially the paper on x-ray heating of MgO) because one of the principal students involved has returned from industry to take a postdoc position at SLAC. Below, we first list all publications and other work products (including the two that are nearing submission) and then summarize several outcomes from this effort. During the term of this award three UW physics graduate students were at least partially supported, and all three received their Ph.D.’s with significant components of their supported work in the dissertation.

47 OTHER INSTRUMENTATION↗

The moderately defficient enzyme: Catalysis-related damage in vivo and its repair

Enzymes have in vivo lifespans. Analysis of lifespans – lifetime totals of catalytic turnovers – suggests that non-survivable collateral chemical damage from the very reactions that enzymes catalyze is a common but underdiagnosed cause of enzyme death. Analysis also implies that many enzymes are moderately deficient in that their active-site regions are not naturally as hardened against such collateral damage as they could be, leaving room for improvement by rational design or directed evolution. Enzyme lifespan might also be improved by engineering systems that repair otherwise fatal active-site damage, of which a handful are known and more are inferred to exist. Unfortunately, the data needed to design and execute such improvements is lacking: there are too few measurements of in vivo lifespan, and existing information on the extent, nature, and mechanisms of active-site damage and repair during normal enzyme operation is too scarce, anecdotal, and speculative to act on. Fortunately, advances in proteomics, metabolomics, cheminformatics, comparative genomics, and structural biochemistry now empower a systematic, data-driven approach to identify, predict, and validate instances of active-site damage and its repair. These capabilities would be practically useful in enzyme redesign and improvement of in-use stability, and could change thinking about which enzymes die young in vivo, and why.

59 BASIC BIOLOGICAL SCIENCES↗

The moderately defficient enzyme: Catalysis-related damage in vivo and its repair

Enzymes have in vivo lifespans. Analysis of lifespans – lifetime totals of catalytic turnovers – suggests that non-survivable collateral chemical damage from the very reactions that enzymes catalyze is a common but underdiagnosed cause of enzyme death. Analysis also implies that many enzymes are moderately deficient in that their active-site regions are not naturally as hardened against such collateral damage as they could be, leaving room for improvement by rational design or directed evolution. Enzyme lifespan might also be improved by engineering systems that repair otherwise fatal active-site damage, of which a handful are known and more are inferred to exist. Unfortunately, the data needed to design and execute such improvements is lacking: there are too few measurements of in vivo lifespan, and existing information on the extent, nature, and mechanisms of active-site damage and repair during normal enzyme operation is too scarce, anecdotal, and speculative to act on. Fortunately, advances in proteomics, metabolomics, cheminformatics, comparative genomics, and structural biochemistry now empower a systematic, data-driven approach to identify, predict, and validate instances of active-site damage and its repair. These capabilities would be practically useful in enzyme redesign and improvement of in-use stability, and could change thinking about which enzymes die young in vivo, and why.

59 BASIC BIOLOGICAL SCIENCES↗

Highlights of Discoveries for δ Scuti Variable Stars from the Kepler Era

The NASA Kepler and follow-on K2 mission (2009–2018) left a legacy of data and discoveries, finding thousands of exoplanets, and also obtaining high-precision long time-series data for hundreds of thousands of stars, including many types of pulsating variables. Here we highlight a few of the ongoing discoveries from Kepler data on δ Scuti pulsating variables, which are core hydrogen-burning stars of about twice the mass of the Sun. We discuss many unsolved problems surrounding the properties of the variability in these stars, and the progress enabled by Kepler data in using pulsations to infer their interior structure, a field of research known as asteroseismology.

79 ASTRONOMY AND ASTROPHYSICS↗

On the Chemical Abundance of HR 8799 and the Planet c

Comparing chemical abundances of a planet and the host star reveals the origin and formation pathway of the planet. Stellar abundance is measured with high-resolution spectroscopy. Planet abundance, on the other hand, is usually inferred from low-resolution data. For directly imaged exoplanets, the data are available from a slew of high-contrast imaging/spectroscopy instruments. Here, we study the chemical abundance of HR 8799 and its planet c. We measure stellar abundance using LBT/PEPSI (R = 120,000) and archival HARPS data: stellar [C/H], [O/H], and C/O are 0.11 ± 0.12, 0.12 ± 0.14, and 0.54{sub −0.09}{sup +0.12}, all consistent with solar values. We conduct atmospheric retrieval using newly obtained Subaru/CHARIS data together with archival Gemini/GPI and Keck/OSIRIS data. We model the planet spectrum with petitRADTRANS and conduct retrieval using PyMultiNest. Retrieved planetary abundance can vary by ∼0.5 dex, from sub-stellar to stellar C and O abundances. The variation depends on whether strong priors are chosen to ensure a reasonable planet mass. Moreover, comparison with previous works also reveals inconsistency in abundance measurements. We discuss potential issues that can cause the inconsistency, e.g., systematics in individual data sets and different assumptions in the physics and chemistry in retrieval. We conclude that no robust retrieval can be obtained unless the issues are fully resolved.

79 ASTRONOMY AND ASTROPHYSICS↗

The Observed Evolution of the Stellar Mass–Halo Mass Relation for Brightest Central Galaxies

We quantify evolution in the cluster-scale stellar mass–halo mass (SMHM) relation's parameters using 2323 clusters and brightest central galaxies (BCGs) over the redshift range 0.03 ≤ z ≤ 0.60. The precision on the inferred SMHM parameters is improved by including the magnitude gap (m gap ) between the BCG and fourth-brightest cluster member (M14) as a third parameter in the SMHM relation. At fixed halo mass, accounting for m gap , through a stretch parameter, reduces the SMHM relation's intrinsic scatter. To explore this redshift range, we use clusters, BCGs, and cluster members identified using the Sloan Digital Sky Survey C4 and redMaPPer cluster catalogs and the Dark Energy Survey redMaPPer catalog. Through this joint analysis, we detect no systematic differences in BCG stellar mass, m gap , and cluster mass (inferred from richness) between the data sets. We utilize the Pareto function to quantify each parameter's evolution. We confirm prior findings of negative evolution in the SMHM relation's slope (3.5σ), and detect negative evolution in the stretch parameter (4.0σ) and positive evolution in the offset parameter (5.8σ). This observed evolution, combined with the absence of BCG growth, when stellar mass is measured within 50 kpc, suggests that this evolution results from changes in the cluster's m gap . For this to occur, late-term growth must be in the intracluster light surrounding the BCG. We also compare the observed results to IllustrisTNG 300-1 cosmological hydrodynamic simulations and find modest qualitative agreement. However, the simulations lack the evolutionary features detected in the real data.

79 ASTRONOMY AND ASTROPHYSICS↗