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DOE OSTI2017

Bayesian Redshift Classification of Emission-line Galaxies with Photometric Equivalent Widths

We present a Bayesian approach to the redshift classification of emission-line galaxies when only a single emission line is detected spectroscopically. We consider the case of surveys for high-redshift Lyα-emitting galaxies (LAEs), which have traditionally been classified via an inferred rest-frame equivalent width (EW; W{sub Lyα}) greater than 20 Å. Our Bayesian method relies on known prior probabilities in measured emission-line luminosity functions and EW distributions for the galaxy populations, and returns the probability that an object in question is an LAE given the characteristics observed. This approach will be directly relevant for the Hobby–Eberly Telescope Dark Energy Experiment (HETDEX), which seeks to classify ∼10{sup 6} emission-line galaxies into LAEs and low-redshift [O II] emitters. For a simulated HETDEX catalog with realistic measurement noise, our Bayesian method recovers 86% of LAEs missed by the traditional W{sub Lyα} > 20 Å cutoff over 2 < z < 3, outperforming the EW cut in both contamination and incompleteness. This is due to the method’s ability to trade off between the two types of binary classification error by adjusting the stringency of the probability requirement for classifying an observed object as an LAE. In our simulations of HETDEX, this method reduces the uncertainty in cosmological distance measurements by 14% with respect to the EW cut, equivalent to recovering 29% more cosmological information. Rather than using binary object labels, this method enables the use of classification probabilities in large-scale structure analyses. It can be applied to narrowband emission-line surveys as well as upcoming large spectroscopic surveys including Euclid and WFIRST.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Classification of Broad Absorption Line Quasars with a Convolutional Neural Network

Quasars that exhibit blueshifted, broad absorption lines (BAL QSOs) are an important probe of black hole feedback on galaxy evolution. Yet the presence of BALs is also a complication for large spectroscopic surveys that use quasars as cosmological probes because the BAL features can affect redshift measurements and contaminate information about the matter distribution in the Lyα forest. We present a new BAL QSO catalog for quasars in the Sloan Digital Sky Survey (SDSS) Data Release 14 (DR14). As the SDSS DR14 quasar catalog has over 500,000 quasars, we have developed an automated BAL classifier with a Convolutional Neural Network (CNN). We trained our CNN classifier on the C IV λ 1549 region of a sample of quasars with reliable human classifications, and compared the results to both a dedicated test sample and visual classifications from the earlier SDSS DR12 quasar catalog. Our CNN classifier correctly classifies over 98% of the BAL quasars in the DR12 catalog, which demonstrates comparable reliability to human classification. The disagreements are generally for quasars with lower signal-to-noise ratio spectra and/or weaker BAL features. Our new catalog includes the probability that each quasar is a BAL, the strength, blueshifts and velocity widths of the troughs, and similar information for any Si IV λ 1398 BAL troughs that may be present. We find significant BAL features in 16.8% of all quasars with 1.57 < z < 5.56 in the SDSS DR14 quasar catalog.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Gaussian Process Classification for Galaxy Blend Identification in LSST

Abstract A significant fraction of observed galaxies in the Rubin Observatory Legacy Survey of Space and Time (LSST) will overlap at least one other galaxy along the same line of sight, in a so-called “blend.” The current standard method of assessing blend likelihood in LSST images relies on counting up the number of intensity peaks in the smoothed image of a blend candidate, but the reliability of this procedure has not yet been comprehensively studied. Here we construct a realistic distribution of blended and unblended galaxies through high-fidelity simulations of LSST-like images, and from this we examine the blend classification accuracy of the standard peak-finding method. Furthermore, we develop a novel Gaussian process blend classifier model, and show that this classifier is competitive with both the peak finding method as well as with a convolutional neural network model. Finally, whereas the peak-finding method does not naturally assign probabilities to its classification estimates, the Gaussian process model does, and we show that the Gaussian process classification probabilities are generally reliable.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

The Young Supernova Experiment Data Release 1 (YSE DR1): Light Curves and Photometric Classification of 1975 Supernovae

We present the Young Supernova Experiment Data Release 1 (YSE DR1), comprised of processed multicolor PanSTARRS1 griz and Zwicky Transient Facility (ZTF) gr photometry of 1975 transients with host–galaxy associations, redshifts, spectroscopic and/or photometric classifications, and additional data products from 2019 November 24 to 2021 December 20. YSE DR1 spans discoveries and observations from young and fast-rising supernovae (SNe) to transients that persist for over a year, with a redshift distribution reaching z ≈ 0.5. We present relative SN rates from YSE's magnitude- and volume-limited surveys, which are consistent with previously published values within estimated uncertainties for untargeted surveys. We combine YSE and ZTF data, and create multisurvey SN simulations to train the ParSNIP and SuperRAENN photometric classification algorithms; when validating our ParSNIP classifier on 472 spectroscopically classified YSE DR1 SNe, we achieve 82% accuracy across three SN classes (SNe Ia, II, Ib/Ic) and 90% accuracy across two SN classes (SNe Ia, core-collapse SNe). Our classifier performs particularly well on SNe Ia, with high (>90%) individual completeness and purity, which will help build an anchor photometric SNe Ia sample for cosmology. We then use our photometric classifier to characterize our photometric sample of 1483 SNe, labeling 1048 (~71%) SNe Ia, 339 (~23%) SNe II, and 96 (~6%) SNe Ib/Ic. YSE DR1 provides a training ground for building discovery, anomaly detection, and classification algorithms, performing cosmological analyses, understanding the nature of red and rare transients, exploring tidal disruption events and nuclear variability, and preparing for the forthcoming Vera C. Rubin Observatory Legacy Survey of Space and Time.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

HLA Class I Supertype Classification Based on Structural Similarity

HLA class I proteins, a critical component in adaptive immunity, bind and present intracellular Ags to CD8+ T cells. The extreme polymorphism of HLA genes and associated peptide binding specificities leads to challenges in various endeavors, including neoantigen vaccine development, disease association studies, and HLA typing. Supertype classification, defined by clustering functionally similar HLA alleles, has proven helpful in reducing the complexity of distinguishing alleles. However, determining supertypes via experiments is impractical, and current in silico classification methods exhibit limitations in stability and functional relevance. In this study, by incorporating three-dimensional structures we present a method for classifying HLA class I molecules with improved breadth, accuracy, stability, and flexibility. Critical for these advances is our finding that structural similarity highly correlates with peptide binding specificity. The new classification should be broadly useful in peptide-based vaccine development and HLA–disease association studies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation

Viruses influence global patterns of microbial diversity and nutrient cycles. Though viral metagenomics (viromics), specifically targeting dsDNA viruses, has been critical for revealing viral roles across diverse ecosystems, its analyses differ in many ways from those used for microbes. To date, viromics benchmarking has covered read pre-processing, assembly, relative abundance, read mapping thresholds and diversity estimation, but other steps would benefit from benchmarking and standardization. Here we use in silico-generated datasets and an extensive literature survey to evaluate and highlight how dataset composition (i.e., viromes vs bulk metagenomes) and assembly fragmentation impact (i) viral contig identification tool, (ii) virus taxonomic classification, and (iii) identification and curation of auxiliary metabolic genes (AMGs). The in silico benchmarking of five commonly used virus identification tools show that gene-content-based tools consistently performed well for long (≥3 kbp) contigs, while k -mer- and blast-based tools were uniquely able to detect viruses from short (≤3 kbp) contigs. Notably, however, the performance increase of k -mer- and blast-based tools for short contigs was obtained at the cost of increased false positives (sometimes up to ~5% for virome and ~75% bulk samples), particularly when eukaryotic or mobile genetic element sequences were included in the test datasets. Furthermore, for viral classification, variously sized genome fragments were assessed using gene-sharing network analytics to quantify drop-offs in taxonomic assignments, which revealed correct assignations ranging from ~95% (whole genomes) down to ~80% (3 kbp sized genome fragments). A similar trend was also observed for other viral classification tools such as VPF-class, ViPTree and VIRIDIC, suggesting that caution is warranted when classifying short genome fragments and not full genomes. Finally, we highlight how fragmented assemblies can lead to erroneous identification of AMGs and outline a best-practices workflow to curate candidate AMGs in viral genomes assembled from metagenomes. Together, these benchmarking experiments and annotation guidelines should aid researchers seeking to best detect, classify, and characterize the myriad viruses ‘hidden’ in diverse sequence datasets.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1972

A comparison of two approaches for category identification and classification analysis from an agricultural scene

Supervised and unsupervised classification modes are discussed in light of the multidisciplinary, high data rate requirements of the ERTS satellites soon to be launched. Inadequacies of each system in light of these requirements are noted and a compromise solution to the data classification system is proposed. An example of results obtained with an implementation of this system are shown and compared with results from a supervised classification scheme.

Schell, J. A.↗

NASA NTRS1971

Some sequential, distribution-free pattern classification procedures with applications

Some sequential, distribution-free pattern classification techniques are presented. The decision problem to which the proposed classification methods are applied is that of discriminating between two kinds of electroencephalogram responses recorded from a human subject: spontaneous EEG and EEG driven by a stroboscopic light stimulus at the alpha frequency. The classification procedures proposed make use of the theory of order statistics. Estimates of the probabilities of misclassification are given. The procedures were tested on Gaussian samples and the EEG responses.

Poage, J. L.↗

NASA NTRS1972

Unsupervised classification of remote multispectral sensing data

The new unsupervised classification technique for classifying multispectral remote sensing data which can be either from the multispectral scanner or digitized color-separation aerial photographs consists of two parts: (a) a sequential statistical clustering which is a one-pass sequential variance analysis and (b) a generalized K-means clustering. In this composite clustering technique, the output of (a) is a set of initial clusters which are input to (b) for further improvement by an iterative scheme. Applications of the technique using an IBM-7094 computer on multispectral data sets over Purdue's Flight Line C-1 and the Yellowstone National Park test site have been accomplished. Comparisons between the classification maps by the unsupervised technique and the supervised maximum liklihood technique indicate that the classification accuracies are in agreement.

Su, M. Y.↗

NASA NTRS1973

A system for analysis and classification of voice communications

A method for analysis and classification of verbal communications typically associated with manned space missions or simulations was developed. The study was carried out in two phases. Phase 1 was devoted to identification of crew tasks and activities which require voice communication for accomplishment or reporting. Phase 2 entailed development of a message classification system and a preliminary test of its feasibility. The classification system permits voice communications to be analyzed to three progressively more specific levels of detail and to be described in terms of message content, purpose, and the participants in the information exchange. A coding technique was devised to allow messages to be recorded by an eight-digit number.

Older, H. J.↗

NASA NTRS1973

Land use classification using texture information in ERTS-A MSS imagery

The author has identified the following significant results. Preliminary digital analysis of ERTS-1 MSS imagery reveals that the textural features of the imagery are very useful for land use classification. A procedure for extracting the textural features of ERTS-1 imagery is presented and the results of a land use classification scheme based on the textural features are also presented. The land use classification algorithm using textural features was tested on a 5100 square mile area covered by part of an ERTS-1 MSS band 5 image over the California coastline. The image covering this area was blocked into 648 subimages of size 8.9 square miles each. Based on a color composite of the image set, a total of 7 land use categories were identified. These land use categories are: coastal forest, woodlands, annual grasslands, urban areas, large irrigated fields, small irrigated fields, and water. The automatic classifier was trained to identify the land use categories using only the textural characteristics of the subimages; 75 percent of the subimages were assigned correct identifications. Since texture and spectral features provide completely different kinds of information, a significant increase in identification accuracy will take place when both features are used together.

Haralick, R. M.↗

NASA NTRS1973

Use of spatial information in classification of remotely sensed data

The use is discussed of spatial information for improving classification accuracy of remotely sensed data. In particular a simple example (the unanimous four nearest neighbor rule) is discussed and its results are presented. This algorithm results in improved classifications accuracy (one to five percentage points) and costs little in execution time. Other schemes for improving classification accuracy are also discussed.

Vanroony, D. L.↗

NASA NTRS1972

A comparison of two approaches for category identification and classification analysis from an agricultural scene.

Schell, J. A.↗

NASA NTRS1972

Unsupervised classification of earth resources data.

A new clustering technique is presented. It consists of two parts: (a) a sequential statistical clustering which is essentially a sequential variance analysis and (b) a generalized K-means clustering. In this composite clustering technique, the output of (a) is a set of initial clusters which are input to (b) for further improvement by an iterative scheme. This unsupervised composite technique was employed for automatic classification of two sets of remote multispectral earth resource observations. The classification accuracy by the unsupervised technique is found to be comparable to that by existing supervised maximum liklihood classification technique.

Su, M. Y.↗

NASA NTRS1973

An unsupervised classification technique for multispectral remote sensing data.

Description of a two-part clustering technique consisting of (a) a sequential statistical clustering, which is essentially a sequential variance analysis, and (b) a generalized K-means clustering. In this composite clustering technique, the output of (a) is a set of initial clusters which are input to (b) for further improvement by an iterative scheme. This unsupervised composite technique was employed for automatic classification of two sets of remote multispectral earth resource observations. The classification accuracy by the unsupervised technique is found to be comparable to that by traditional supervised maximum-likelihood classification techniques.

Su, M. Y.↗

NASA NTRS1974

Investigations on classification categories for wetlands of Chesapeake Bay using remotely sensed data

The use of remote sensors to determine the characteristics of the wetlands of the Chesapeake Bay and surrounding areas is discussed. The objectives of the program are stated as follows: (1) to use data and remote sensing techniques developed from studies of Rhode River, West River, and South River salt marshes to develop a wetland classification scheme useful in other regions of the Chesapeake Bay and to evaluate the classification system with respect to vegetation types, marsh physiography, man-induced perturbation, and salinity; and (2) to develop a program using remote sensing techniques, for the extension of the classification to Chesapeake Bay salt marshes and to coordinate this program with the goals of the Chesapeake Research Consortium and the states of Maryland and Virginia. Maps of the Chesapeake Bay areas are developed from aerial photographs to display the wetland structure and vegetation.

Williamson, F. S. L.↗

NASA NTRS1975

The decision tree approach to classification

A class of multistage decision tree classifiers is proposed and studied relative to the classification of multispectral remotely sensed data. The decision tree classifiers are shown to have the potential for improving both the classification accuracy and the computation efficiency. Dimensionality in pattern recognition is discussed and two theorems on the lower bound of logic computation for multiclass classification are derived. The automatic or optimization approach is emphasized. Experimental results on real data are reported, which clearly demonstrate the usefulness of decision tree classifiers.

Wu, C.↗

NASA NTRS1974

Automatic land use classification using Skylab S-192 multispectral data

Investigation of the accuracy attainable in automatic land use classification using 13 bands of multispectral data from the Skylab S-192 scanner. Classification to levels containing seven urban classes, five agricultural, and three water classes is shown to be achievable. With 17 classes, a classification accuracy of 72% was obtained. A wide spectral range, including the thermal band, appears to be most useful for distinguishing urban classes. Agricultural and water classes can be separated using spectral bands covering the visible to far IR.

Kirvida, L.↗