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At least 415 records · Page 23

VipariNama: RNA viral vectors to rapidly elucidate the relationship between gene expression and phenotype

Synthetic transcription factors have great promise as tools to help elucidate relationships between gene expression and phenotype by allowing tunable alterations of gene expression without genomic alterations of the loci being studied. However, the years-long timescales, high cost, and technical skill associated with plant transformation have limited their use. In this work, we developed a technology called VipariNama (ViN) in which vectors based on the tobacco rattle virus are used to rapidly deploy Cas9-based synthetic transcription factors and reprogram gene expression in planta. We demonstrate that ViN vectors can implement activation or repression of multiple genes systemically and persistently over several weeks in Nicotiana benthamiana, Arabidopsis (Arabidopsis thaliana), and tomato (Solanum lycopersicum). By exploring strategies including RNA scaffolding, viral vector ensembles, and viral engineering, we describe how the flexibility and efficacy of regulation can be improved. We also show how this transcriptional reprogramming can create predictable changes to metabolic phenotypes, such as gibberellin biosynthesis in N. benthamiana and anthocyanin accumulation in Arabidopsis, as well as developmental phenotypes, such as plant size in N. benthamiana, Arabidopsis, and tomato. These results demonstrate how ViN vector-based reprogramming of different aspects of gibberellin signaling can be used to engineer plant size in a range of plant species in a matter of weeks. In summary, ViN accelerates the timeline for generating phenotypes from over a year to just a few weeks, providing an attractive alternative to transgenesis for synthetic transcription factor-enabled hypothesis testing and crop engineering.

59 BASIC BIOLOGICAL SCIENCES↗

Permanent magnets for the return loop of the Cornell-Brookhaven energy recovery linac test accelerator

214 neodymium permanent magnets have been manufactured for the return loop of the CBETA multi-turn ERL at Cornell University. There are 5 types of quadrupole and combined-function gradient magnets using a variant of the circular Halbach design. These are made out of NdFeB material and glued into an aluminium housing with water channels for temperature stabilisation. The NdFeB wedges and magnet construction were done by outside companies, while the final “tuning” using inserts containing 64 iron rods per magnet was done at BNL over a period of about 6 months. Average relative field errors of 2.2×10 -4 were achieved on the beam region. The magnet strengths vary by type but are of order 10 T/m for quadrupole component and up to 0.3 T for the dipole. This paper reports on the field quality and timeline achieved in this production process

43 PARTICLE ACCELERATORS↗

Stasis in an expanding universe: A recipe for stable mixed-component cosmological eras

One signature of an expanding universe is the time variation of the cosmological abundances of its different components. For example, a radiation-dominated universe inevitably gives way to a matter-dominated universe, and critical moments such as matter-radiation equality are fleeting. In this paper, we point out that this lore is not always correct and that it is possible to obtain a form of “stasis” in which the relative cosmological abundances $Ω_i$ of the different components remain unchanged over extended cosmological epochs, even as the universe expands. Moreover, here we demonstrate that such situations are not fine-tuned but are actually global attractors within certain cosmological frameworks, with the universe naturally evolving toward such long-lasting periods of stasis for a wide variety of initial conditions. The existence of this kind of stasis therefore gives rise to a host of new theoretical possibilities across the entire cosmological timeline, ranging from potential implications for primordial density perturbations, dark-matter production, and structure formation all the way to early reheating, early matter-dominated eras, and even the age of the Universe.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

GW170817: Implications for the Stochastic Gravitational-Wave Background from Compact Binary Coalescences

The LIGO Scientific and Virgo Collaborations have announced the event GW170817, the first detection of gravitational waves from the coalescence of two neutron stars. The merger rate of binary neutron stars estimated from this event suggests that distant, unresolvable binary neutron stars create a significant astrophysical stochastic gravitational-wave background. The binary neutron star component will add to the contribution from binary black holes, increasing the amplitude of the total astrophysical background relative to previous expectations. In the Advanced LIGO-Virgo frequency band most sensitive to stochastic backgrounds (near 25 Hz), we predict a total astrophysical background with amplitude Ω GW ( f = 25 Hz ) = 1. 8 - 1.3 + 2.7 × 10 - 9 with 90% confidence, compared with Ω GW ( f = 25 Hz ) = 1. 1 - 0.7 + 1.2 × 10 - 9 from binary black holes alone. Finally, assuming the most probable rate for compact binary mergers, we find that the total background may be detectable with a signal-to-noise-ratio of 3 after 40 months of total observation time, based on the expected timeline for Advanced LIGO and Virgo to reach their design sensitivity.

79 ASTRONOMY AND ASTROPHYSICS↗

On the Use of Satellite Nightlights for Power Outages Prediction

Hurricanes are a dominant disaster in the Caribbean, always causing serious power outages throughout the islands. Hurricane Maria was a prime example, causing unimaginable destruction of the power infrastructure of Puerto Rico (PR). Consequently, one month after the hurricane landfall, approximately 80% of the population was still without power. After an event of such massive destruction, the electric power restoration process progresses very slowly. This timeline can be improved using power outage (PO) forecast models that help identify the vulnerable places before the hurricane landfall. Generally, these models are trained with historical power outages records, associated data on weather conditions, and additional information about the natural and built environments. However, PO records are often difficult to acquire, and, in many instances, the power utility companies may not record them. This study utilizes a satellite-based Visible Infrared Imaging Radiometer Suite (VIIRS) night light data product as a surrogate for the power delivery to predict hurricane-induced PO in areas having limited to nonexistent historical data records. The processed satellite data is then used along with geographic variables, and simulated weather data to formulate machine learning-based algorithms to predict PO for future hurricane events. These models are applied and validated in the context of the PR catastrophic storm, Hurricane Maria.

54 ENVIRONMENTAL SCIENCES↗

Experiments and Project-Based Enhancements for STEM Learning

Motivating K-12 students to pursue careers in science, technology, engineering, and mathematics (STEM) is an effort that requires consistent engagement. Throughout the K-12 student timeline, STEM educators need to continuously pivot their teaching and update their educational materials to motivate the next generation of students. Once students begin their undergraduate education, university professors need to encourage them to consider pursuing graduate studies to ensure that a qualified future workforce can be developed for research and teaching. In this paper, we present our work on developing STEM materials for K-12 student engagement. Our K-12 materials target the grid integration of hydrogen assets that are suitable to engage students in the classroom. Our undergraduate materials target hands-on projects and collaboration with industry to connect classroom learning with real-world applications and needs in renewable energy. Our work leverages available open-source models and tools to create projects for undergraduate students and motivate their interest in pursuing research topics in graduate-level education.

ENERGY PLANNING, POLICY, AND ECONOMY↗

Introducing SpaceNet 9 - Cross-Modal Satellite Imagery Registration for Natural Disaster Responses

Computer vision algorithms are increasingly leveraged to accelerate geospatial analysis for disaster response and recovery. As the diversity of remote sensing imagery grows with optical, SAR, and other modalities, a perquisite for analytics is cross-modal image registration. There is a high potential to harness computer vision for this pre-processing requirement toward enabling downstream analytics such as heterogeneous change detection, automated feature extraction, and data fusion. Advancement in these areas has the potential to simplify data wrangling tasks and further accelerate disaster response timelines. The SpaceNet 9 challenge (launching in mid-2024) focuses on addressing the cross-modal image registration problem and demonstrating the utility of such modules on earthquake impacted scenarios. This paper describes the motivation for the SpaceNet 9 and provides a first overview of the dataset, the baseline algorithm, and implications for seeking cross-modal image registration in Earth observation. Code is available at https://github.com/SpaceNetChallenge/SpaceNet9.

Hansch, Ronny↗

Evolution of Distributed Energy Resource Grid Interconnection Standards for Integrating Emerging Storage Technologies

Grid interconnection standards facilitate safe and reliable grid integration of distributed energy resources (DERs). Evolution of a standard for DERs is expected to capture and accommodate widely different characteristics of DER and minimize unique grid integration challenges. This makes development of a uniform grid interconnection standard for all types of DERs a challenging and an ever-evolving consideration. This paper presents a detailed timeline of evolution, from the early 2000s to 2018, of DER interconnection standards and the research that informed their development. This is followed by a review of the research topics being considered in the grid integration of Energy Storage Systems (ESSs) which are expected to have the most significant growth amongst all DER types. These help in highlighting the need for a new standard to accommodate the unique characteristics of ESSs, and where the existing DER interconnection standard frameworks may be leveraged.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Pulsar Movement Animation and its Corresponding Signal Visualization for Timing Source

The global positioning system, widely used for synchronization in energy systems, faces vulnerabilities, while Pulsars—natural cosmic clocks—offer long-term stability as potential backup timing sources. Existing research lacks sufficient exploration of Pulsar signal animation under astrophysical factors, limiting practical applications. This study establishes a mathematical model based on the rotation dynamics of dual-beam Pulsars and implements dynamic signal visualization through MATLAB. The model dynamically illustrates the relative motion between Pulsar beams and observers via timeline calculations, beam intensity modeling, and rotation matrix derivation. A case study on the millisecond Pulsar J1939+2134 reveals that observer angles influence signal peak timing, while beam widths determine signal duration, highlighting the critical role of parameter calibration for timing accuracy. Open-source code and animation results are publicly shared, providing tools for interdisciplinary research. This study validates the feasibility of Pulsar-based timing in energy systems, offering new insights to enhance synchronization robustness.

Wu, Ori [ORNL] (ORCID:0000000326723410)↗

R&D Needs for a US Fusion Magnet Base Program

Significant technology maturation efforts are underway by privately funded fusion startups with the goal to demonstrate mature HTS magnet technology. To support the private sector development effort and the DOE milestone based program, a U.S. Fusion Magnet Community Workshop was held on March 14-15, 2023 in Princeton, NJ. This was the first U.S. community workshop focused on fusion magnet technologies aimed at determining the structure and technical direction for a public program designed to complement the private fusion industry landscape. Based on the wide range of different contributions, a set of general themes and fusion magnet R&D needs were identified and discussed. Feedback received to the workshop charge questions highlighted critical magnet R&D gaps such as availability of existing large cable and coil test facilities, a magnet education program that can generate a trained and essential workforce by leveraging R&D capabilities of universities, U.S. national labs, and fusion industry. Other opportunities synergistic and complementary with high energy physics, high field magnets that are open for a broad range of science drivers. The defined R&D gaps underpin the need for a mid-term and long-term public program in fusion magnet development, which reflects the purpose of the workshop in developing the rationale and consent for such a base program. A self-consistent, fusion specific U.S. fusion magnet program will complement and de-risk fusion pilot plants (FPPs) of promising magnetic configurations developed by private companies on a timeline consistent with the NASEM report on bringing fusion to the U.S. grid. We describe the magnet challenges presented and R&D needs discussed in the workshop. In conclusion, these challenges and R&D needs provide focus for the development of U.S. mid-term and long term roadmaps on enabling HTS for high field fusion.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

High Current Density Cables for Simpler HTS Magnets in Fusion Energy Systems

High current density cables are needed for the engineering design of potentially low cost, simpler geometry high temperature superconducting (HTS) magnets in the promising magnetic configurations as a fusion pilot plant (FPP) option. Significant technology maturation efforts are underway by privately funded startups with the goal to demonstrate mature HTS magnet technology. Test results, however, indicate critical engineering issues remain to be addressed to meet performance goals, and demonstrate HTS coil operation repeatability and reliability. To this end, exploring and enabling multiple viable conductor and cable options is vital. Partnering with a private fusion startup and manufacturers of superconducting strands and cables, Princeton Plasma Physics Laboratory (PPPL) is exploring and seeking to de-risk the aggressive high field approach presently targeted by others. Our main objective is to develop, test and calibrate novel high current density cables for a broad deployment of affordable and reliable coils using Bi-2212 conductors. If successful, such a project will provide technical feasibility for promising FPP configurations including spherical tokamaks (ST) and compact stellarators. Here, we aim at the state-of-the-art Bi-2212 cable technologies toward a current density of 100 A/mm 2 at 16 T and 4.2 K–10 K operation for low cost, simpler geometry toroidal field (TF) coils for compact stellarators developed by fusion startup companies on a timeline consistent with the FPP initiatives and beyond.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

History of Pu-238 Production Restart Efforts at Idaho National Laboratory and Oak Ridge National Laboratory

In the early 2010s, efforts to restart production in the U.S. of plutonium-238 heat source (HSPu) material for NASA deep space missions were initiated. Processes, procedures, hardware, and chemical separations were developed and implemented to enable the production of heat source material at Oak Ridge National Laboratory (ORNL) and Idaho National Laboratory (INL). Here, this review provides an overview of the timeline and efforts associated with the restart of production, as well as upcoming efforts to increase production.

07 ISOTOPE AND RADIATION SOURCES↗

Ordering Traces Logically to Identify Lateness in Message Passing Programs

Event traces are valuable for understanding the behavior of parallel programs. However, automatically analyzing a large parallel trace is difficult, especially without a specific objective. We aid this endeavor by extracting a trace's logical structure, an ordering of trace events derived from happened-before relationships, while taking into account developer intent. Using this structure, we can calculate an operation's delay relative to its peers on other processes. The logical structure also serves as a platform for comparing and clustering processes as well as highlighting communication patterns in a trace visualization. We present an algorithm for determining this idealized logical structure from traces of message passing programs, and we develop metrics to quantify delays and differences among processes. We implement our techniques in Ravel, a parallel trace visualization tool that displays both logical and physical timelines. Rather than showing the duration of each operation, we display where delays begin and end, and how they propagate. As a result, we apply our approach to the traces of several message passing applications, demonstrating the accuracy of our extracted structure and its utility in analyzing these codes.

97 MATHEMATICS AND COMPUTING↗

VAST Challenge 2014: The Kronos Incident

The 2014 IEEE Visual Analytics Science and Technology (VAST) Challenge presented researchers with a single fictitious scenario: the disappearance of staff members of the GASTech oil and gas company on location on the island of Kronos. A group named the Protectors of Kronos (POK) was the prime suspect in the disappearance. Three mini-challenges and a grand challenge were offered. Mini-challenge 1 included multiple types of text data for participants to provide a timeline of key events and characterize the POK, mini-challenge 2 focused on individuals’ movement and financial data for participants to provide patterns of daily life, and mini-challenge 3 featured real-time streaming social media and emergency service data for participants to provide hostage and kidnapper information. The grand challenge asked the participants to integrate results and generate a synopsis of events. The VAST Challenge received 73 submissions from 13 countries

visual analytics, visualization, evaluation, VAST ↗

Multi‐Model Ensembles in Ecosystem Modeling: Challenges and Best Practices for Decision‐Making

Ecosystem models are increasingly central to the decision-making for environmental policy, conservation planning, and climate-related investments. Yet, the growing reliance on Multi-Model Ensembles (MMEs) of ecosystem models by practitioners and policymakers, sometimes under tight timelines and imperfect information, has frequently outpaced the scientific rigor required to ensure ensemble reliability. Here, MMEs refer to approaches that combine targeted predictions from multiple models with the expectation of improving robustness and quantifying predictive uncertainty. Poorly designed MMEs may create a false sense of confidence and lead to suboptimal policy and market decisions. This perspective argues that robust decision-making-relevant MMEs must be grounded on two pillars: (1) rigorous Model Intercomparison Projects (MIPs), which identify inter-model agreement and disagreement, characterize model uncertainties, and evaluate robustness with observationally based benchmarks—MIPs' diagnostic evaluation is so critical that it must be needed to drive MME's decision in model selection and weighting, especially when only a limited number of models available; and (2) co-design by both stakeholders and scientists to ensure that scenarios, metrics and uncertainty requirements provide decision-relevant information. Building upon the past success and lessons from the existing MIPs-MMEs efforts (e.g., climate/Earth system/crop), we derived the theoretical basis for MMEs, addressed their specific challenges in ecosystem modeling, and highlighted proper consideration of model numbers and diversity, risk of model inter-dependence, effective calibration of model parameters, possible overdue of some ecosystem model development, critical roles of open benchmark data across a wide range of conditions, and suggested use of Artificial Intelligence to support MIPs-MMEs. We highlighted the under-recognized opportunity for MIPs and MMEs to drive scientific progress and innovation through identifying better performing models, systematic benchmarking, feedback loops, and targeted model improvement. By following actionable best practice guidelines, MMEs can evolve from ad hoc aggregation of models into a trusted backbone of environmental policy and decision-making.

ecosystem modeling↗

A partition of the combined impacts of socioeconomic development and climate variation on economic risks of riverine floods

Nonstationarities in both climate and socioeconomic systems play a role in flood risk. Based on a data-driven case study in an urbanized watershed subjected to nonstationary factors in climate (rain, snow, and rain on snow) and socioeconomic conditions (e.g., built environment market changes), a multi-scale, multi-model approach was adopted to develop local-scale flood hazard predictions and an analytical framework was developed to quantify the associated flood risk. The case study shows that socioeconomic development can have a comparable contribution as climate variability when evaluating the expected annual damage. Here, the relative contributions from socioeconomic development, in some cases, do not necessarily compound the risk, but can, in fact, act as a mitigating factor in annualized risk. Timelines of risk management planning are an important factor to consider. Socioeconomic factors such as market value can produce non-linear and reversed trends in flood impact assessments within the 10-year time frame. Further, the nonstationarity of climate and development conditions together was shown to cause up to 43% of the variation in risk estimates and up to 70% of the variation in the benefit-cost effectiveness.

54 ENVIRONMENTAL SCIENCES↗

An integrative framework reveals widespread gene flow during the early radiation of oaks and relatives in Quercoideae (Fagaceae)

ABSTRACT Although the frequency of ancient hybridization across the Tree of Life is greater than previously thought, little work has been devoted to uncovering the extent, timeline, and geographic and ecological context of ancient hybridization. Using an expansive new dataset of nuclear and chloroplast DNA sequences, we conducted a multifaceted phylogenomic investigation to identify ancient reticulation in the early evolution of oaks (Quercus). We document extensive nuclear gene tree and cytonuclear discordance among major lineages ofQuercusand relatives in Quercoideae. Our analyses recovered clear signatures of gene flow against a backdrop of rampant incomplete lineage sorting, with gene flow most prevalent among major lineages ofQuercusand relatives in Quercoideae during their initial radiation, dated to the Early‐Middle Eocene. Ancestral reconstructions including fossils suggest ancestors ofCastanea + Castanopsis,Lithocarpus, and the Old World oak clade probably co‐occurred in North America and Eurasia, while the ancestors ofChrysolepis, Notholithocarpus, and the New World oak clade co‐occurred in North America, offering ample opportunity for hybridization in each region. Our study shows that hybridization—perhaps in the form of ancient syngameons like those seen today—has been a common and important process throughout the evolutionary history of oaks and their relatives. Concomitantly, this study provides a methodological framework for detecting ancient hybridization in other groups.

Biochemistry & Molecular Biology↗

Balancing Participation and Speed: A Polycentric Governance Lens on Renewable‐Energy Siting

Siting and permitting for renewable projects vary in process and authority structures. Such variation can create coordination challenges and inconsistent public participation processes. We develop a Governance Trade-Off Matrix to classify permitting processes by (1) authority structure (polycentric vs. monocentric) and (2) procedural extensiveness (minimal vs. extensive). The matrix shows when jurisdictional dispersion enables timely implementation and when it creates coordination breakdowns. We propose testable hypotheses on how governance design affects project timelines, conflict escalation, and local acceptance. Here, the framework highlights design levers, like single lead agencies, structured public involvement, and statutory shot clocks, to reconcile meaningful local input with urgent climate imperatives.

14 SOLAR ENERGY↗