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At least 415 records · Page 23
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary with Species and Time as a Function of Secretome Composition

Manganese (Mn) oxides are among the strongest oxidants and sorbents in the environment, and Mn(II) oxidation to Mn(III/IV) (hydr)oxides includes both abiotic and microbially-mediated processes. While white-rot Basidiomycete fungi oxidize Mn(II) using laccases and manganese peroxidases in association with lignocellulose degradation, the mechanisms by which filamentous Ascomycete fungi oxidize Mn(II) and a physiological role for Mn(II) oxidation in these organisms remain poorly understood. Here we use a combination of chemical and in-gel assays and bulk mass spectrometry to demonstrate secretome-based Mn(II) oxidation in three phylogenetically diverse Ascomycetes that is mechanistically distinct from hyphal-associated Mn(II) oxidation on solid substrates. We show that Mn(II) oxidative capacity of these fungi is dictated by species-specific secreted enzymes and varies with secretome age, and we reveal the presence of both Cu-based and FAD-based Mn(II) oxidation mechanisms in all 3 species, demonstrating mechanistic redundancy. Specifically, we identify candidate Mn(II)- oxidizing enzymes as tyrosinase in Stagonospora sp. SRC1lsM3a, bilirubin oxidase in Stagonospora sp. and Paraconiothyrium sporulosum AP3s5-JAC2a, and GMC oxidoreductase in all 3 species, including Pyrenochaeta sp. DS3sAY3a. Furthermore, we demonstrate that secretome-based Mn(II) oxidative capacity is induced by the presence of Mn(II) in Stagonospora sp. and Pyrenochaeta sp., suggesting a physiological role for Mn(II) oxidation in these Ascomycetes. The diversity of the candidate Mn(II)-oxidizing enzymes identified in this study suggests that the ability of fungal secretomes to oxidize Mn(II) may be more widespread than previously thought.

Zeiner, Carolyn A.↗
NASA NTRS1975

On the effect of timing errors in run length codes

Many redundancy removal algorithms employ some sort of run length code. Blocks of timing words are coded with synchronization words inserted between blocks. The probability of incorrectly reconstructing a sample because of a channel error in the timing data is a monotonically nondecreasing function of time since the last synchronization word. In this paper we compute the 'probability that the accumulated magnitude of timing errors equal zero' as a function of time since the last synchronization word for a zero-order predictor (ZOP). The result is valid for any data source that can be modeled by a first-order Markov chain and any digital channel that can be modeled by a channel transition matrix. An example is presented.

Wilkins, L. C.↗
NASA NTRS2002

Entrainment in solution of an oscillating NADH oxidase activity from the bovine milk fat globule membrane with a temperature-compensated period length suggestive of an ultradian time-keeping (clock) function

Entrainment in solution of an oscillating activity with a temperature compensated period of 24 min is described for a NADH oxidase (NOX) activity of the bovine milk fat globule membrane, a derivative of the mammary epithelial cell plasma membrane. The period of 24 min remained unchanged at 17 degrees C, 27 degrees C and 37 degrees C whereas the amplitude approximately doubled with each 10 degree C rise in temperature (Q(10)congruent with 2). The periodicity was observed with both intact milk fat globule membranes and with detergent-solubilized membranes, demonstrating that the oscillations did not require an association with membranes. The periodicity was not the result of instrument variation or of chemical interactions among reactants in solution. Preparations with different periodicities entrained (autosynchronized) when mixed. Upon mixing, the preparations exhibited two oscillatory patterns but eventually a single pattern representing the mean of the farthest separated maxima of the two preparations analyzed separately emerged. The cell surface NOX protein is the first reported example of an entrainable biochemical entity with a temperature-compensated periodicity potentially capable of functioning as an ultradian or circadian clock driver.

Non-NASA Center↗
NASA NTRS2008

Calculations for Calibration of a Mass Spectrometer

A computer program performs calculations to calibrate a quadrupole mass spectrometer in an instrumentation system for identifying trace amounts of organic chemicals in air. In the operation of the mass spectrometer, the mass-to-charge ratio (m/z) of ions being counted at a given instant of time is a function of the instantaneous value of a repeating ramp voltage waveform applied to electrodes. The count rate as a function of time can be converted to an m/z spectrum (equivalent to a mass spectrum for singly charged ions), provided that a calibration of m/z is available. The present computer program can perform the calibration in either or both of two ways: (1) Following a data-based approach, it can utilize the count-rate peaks and the times thereof measured when fed with air containing known organic compounds. (2) It can utilize a theoretical proportionality between the instantaneous m/z and the instantaneous value of an oscillating applied voltage. The program can also estimate the error of the calibration performed by the data-based approach. If calibrations are performed in both ways, then the results can be compared to obtain further estimates of errors.

Lee, Seungwon↗