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At least 415 records · Page 23

Spectroscopic characterization of Mn 2+ and Cd 2+ coordination to phosphorothioates in the conserved A9 metal site of the hammerhead ribozyme

Phosphorothioate modifications have widespread use in the field of nucleic acids. As substitution of sulfur for oxygen can alter metal coordination preferences, the phosphorothioate metal-rescue experiment is a powerful method for identifying metal coordination sites that influence specific properties in a large RNAs. The A9/G10.1 metal binding site of the hammerhead ribozyme (HHRz) has previously been shown to be functionally important through phosphorothioate rescue experiments. While an A9-S Rp substitution is inhibitory in Mg 2+ , thiophilic Cd 2+ rescues HHRz activity. Mn 2+ is also often used in phosphorothioate metal-rescue studies but does not support activity for the A9-S Rp HHRz. Here, we use EPR, electron spin-echo envelope modulation (ESEEM), and X-ray absorption spectroscopic methods to directly probe the structural consequences of Mn 2+ and Cd 2+ coordination to R p and S p phosphorothioate modifications at the A9/G10.1 site in the truncated hammerhead ribozyme (tHHRz). The results demonstrate that while Cd 2+ does indeed bind to S in the thio-substituted ligand, Mn 2+ coordinates to the non–sulfur oxo group of this phosphorothioate, regardless of isomer. Computational models demonstrate the energetic preference of Mn—O over Mn—S coordination in metal-dimethylthiophosphate models. In the case of the tHHRz, the resulting Mn 2+ coordination preference of oxygen in either R p or S p A9 phosphorothioates differentially tunes catalytic activity, with Mn—O coordination in the A9-S Rp phosphorothioate enzyme being inhibitory.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Effects of Particle Mixing and Gravitational Settling on Charge Transport in Carbon Flow-Electrode Cells

Flowable carbon slurries are actively studied and under development for charge transport in various electrochemical systems including flow capacitors, capacitive deionization cells, semi-solid flow batteries, and lithium extraction. However, much less is known about in operando slurry flow dynamics and their corresponding effect on charge transport. We performed an experimental study of mixing and settling dynamics of slurry electrodes within an electrochemical flow cell during continuous operations. The electrochemical cell consisted of two horizontal co-flowing channels, separated by a cation-exchange membrane (CEM). Here we used high-speed optical imaging of planes parallel to gravity and simultaneous electrochemical measurements. At low flow rates, dense yet dynamic particle beds formed on the bottom electrode in each channel, which unexpectedly yielded the highest currents. This approach enables the operation of the flow cell at low system-average particle concentrations while leveraging gravity-driven particle settling to locally enhance carbon concentrations precisely at the current collector sites. Conversely, high flow rates were characterized by thin particle beds and well-mixed particle flows. In the latter case, the electrodes in closest proximity (located on either side of the CEM) achieved a current higher than the other electrode pairs. The observations have implications for slurry control and electrode designs in electrochemical systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Solution-Processable Copper Halide Based Hybrid Materials Consisting of Cationic Ligands with Different Coordination Modes

Here, using cationic ligands containing both aromatic and aliphatic coordination sites, we have synthesized and structurally characterized five new CuX-based hybrid materials consisting of anionic inorganic motifs that also form coordinate bonds with the cationic organic ligands. As a result of the unique bonding nature at the inorganic/organic interfaces, these compounds demonstrate strong resistance toward heat and can be readily processed in solution. They emit light in the visible region ranging from cyan to yellow color, with the highest photoluminescence quantum yield (PLQY) reaching 71%. The influence of the different coordination modes of the ligands on their emission behavior was investigated employing both experimental and theoretical methods, which have provided insight in understanding structure–property relationships in these materials and guidelines for tuning and enhancing their chemical and physical properties.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Graphene Quantum Dot Composites Embedded with CoZn Alloy Nanoparticles for Enhanced Oxygen Reduction and Evolution Reactions

Developing efficient and durable electrocatalysts for oxygen reduction (ORR) and oxygen evolution reactions (OER) is crucial for energy conversion technologies. In this study, core–shell graphene quantum dot (GQD) composites embedded with Co, Zn, and CoZn alloy nanoparticles were synthesized using a solid-state microwave synthesis method and systematically investigated for their electrochemical performance. The structural and compositional analyses confirm that the integration of transition metal nanoparticles enhances the electronic properties of GQDs, providing abundant active sites and facilitating charge transfer. Electrochemical characterization reveals that GQD-CoZn-3 (GQD:Co:Zn = 10.5:0.5:0.5) exhibits superior ORR and OER catalytic activities, achieving the highest current densities of 205 A g–1 and 102 A g–1 at 100 mV s–1, respectively. These performance values surpass those of pristine GQDs and single-metal (Co or Zn) embedded counterparts, emphasizing the strong synergistic effect between the CoZn alloy and the functionalized carbon framework. Impedance measurements further reveal a substantial reduction in charge-transfer resistance, while chronoamperometry tests demonstrate excellent catalytic stability and CO tolerance, highlighting the robustness of the core–shell GQD structure. These findings provide valuable insights into the design of advanced carbon-based electrocatalysts for energy applications.

Panda, Pradeep Kumar↗

Inverse Trans Influence and Uranium-Arene σ-Bonding Drive Molecular Geometry: Ligand Modification from Hard to Soft Flips the Oxide from Axial to Equatorial

A rare example of an equatorially bound terminal uranium(V) oxo complex in a chelating sulfur-based ligand environment, namely [(mes( Me,Ad ArS) 3 )U V (O eq )(THF)] (2), is presented. Octahedrally coordinated 2 is obtained by reaction of the mesitylene-anchored tris-thiophenolate-coordinated uranium(III) complex [U III ((SAr Ad,Me ) 3 mes)] (1) with the oxygen-atom transfer reagent N 2 O. The observed, equatorially bound oxo ligand in 2 is in stark contrast to its known tris-aryloxide analog, [(mes( Me,Ad ArO) 3 )U V (O ax )(THF)] (A), where the oxo ligand occupies the typically observed axial coordination site. Complexes 1 and 2 are characterized by single-crystal X-ray diffraction analyses and spectroscopic and magnetochemical methods, including 1 H NMR, UV/vis/NIR electronic absorption, as well as EPR spectroscopy and SQUID magnetometry, thus confirming the C S symmetry and the pentavalent oxidation state of 2. Encompassing quantum chemical calculations (DFT and CASPT2) on 2 and its tris-phenolate analog A, support and rationalize the structural and electronic differences. The molecular orbital pictures show that a stabilizing σ-bonding interaction arising from the U–O eq inverse trans influence (ITI) is present in 2 but missing in A. In 2, the sulfur 3p orbitals are closer in energy to the uranium 5f manifold than the arene π-system, leading to an ITI, while U–arene σ- or δ-bonding is not observed. Although the arene orbitals remain separated from the uranium 5f orbitals in A, the absence of an ITI allows the arene a 2u orbital to engage in a σ-type interaction with the metal. Thus, incorporating a tris-thiophenolate to an arene anchor introduces a new design concept in molecular f-element chemistry. This approach stabilizes an equatorially bound U(V) oxo center, contrasting with its tris-phenolate counterpart, where oxo coordination is axial. The observed geometric divergence, driven by competing ITI and U–arene interactions, not only tunes electronic structure but also leads to differentiated reactivity: only the phenolate analogs activate H 2 O, while the thiolates do not.

Hydrocarbons↗

Evaluating proxy influence in assimilated paleoclimate reconstructions – Testing the exchangeability of two ensembles of spatial processes

Climate field reconstructions (CFR) attempt to estimate spatiotemporal fields of climate variables in the past using climate proxies such as tree rings, ice cores, and corals. Data Assimilation (DA) methods are a recent and promising new means of deriving CFRs that optimally fuse climate proxies with climate model output. Despite the growing application of DA-based CFRs, little is understood about how much the assimilated proxies change the statistical properties of the climate model data. To address this question, we propose a robust and computationally efficient method, based on functional data depth, to evaluate differences in the distributions of two spatiotemporal processes. In this study, we apply our test to study global and regional proxy influence in DA-based CFRs by comparing the background and analysis states, which are treated as two samples of spatiotemporal fields. We find that the analysis states are significantly altered from the climate-model-based background states due to the assimilation of proxies. Moreover, the difference between the analysis and background states increases with the number of proxies, even in regions far beyond proxy collection sites. Our approach allows us to characterize the added value of proxies, indicating where and when the analysis states are distinct from the background states.

54 ENVIRONMENTAL SCIENCES↗

Soil Origin and Plant Genotype Modulate Switchgrass Aboveground Productivity and Root Microbiome Assembly

Switchgrass (Panicum virgatum) is a model perennial grass for bioenergy production that can be productive in agricultural lands that are not suitable for food production. There is growing interest in whether its associated microbiome may be adaptive in low- or no-input cultivation systems. However, the relative impact of plant genotype and soil factors on plant microbiome and biomass are a challenge to decouple. To address this, a common garden greenhouse experiment was carried out using six common switchgrass genotypes, which were each grown in four different marginal soils collected from long-term bioenergy research sites in Michigan and Wisconsin. We characterized the fungal and bacterial root communities with high-throughput amplicon sequencing of the ITS and 16S rDNA markers, and collected phenological plant traits during plant growth, as well as soil chemical traits. At harvest, we measured the total plant aerial dry biomass. Significant differences in richness and Shannon diversity across soils but not between plant genotypes were found. Generalized linear models showed an interaction between soil and genotype for fungal richness but not for bacterial richness. Community structure was also strongly shaped by soil origin and soil origin × plant genotype interactions. Overall, plant genotype effects were significant but low. Random Forest models indicate that important factors impacting switchgrass biomass included NO 3 – , Ca 2+ , PO 4 3– , and microbial biodiversity. We identified 54 fungal and 52 bacterial predictors of plant aerial biomass, which included several operational taxonomic units belonging to Glomeraceae and Rhizobiaceae, fungal and bacterial lineages that are involved in provisioning nutrients to plants.

plant biomass↗

Utah FORGE 2-2439v2: Characterizing In-Situ Stress with Laboratory Modelling and Field Measurements - 2024 Annual Workshop Presentation

This is a presentation on A Multi-Component Approach to Characterizing In-Situ Stress at the Utah FORGE Site: Laboratory Modelling and Field Measurements project by The University of Pittsburgh, presented by Andrew Bunger. The project characterizes the stress in the Utah FORGE EGS reservoir using three methods: Method 1: Demonstrate complimentary laboratory rock-core stress estimation combined with Machine Learning approach for measuring in-situ stress from field sonic log data; Method 2: Complete field based in-situ measurement (mini-frac); and Method 3: Develop a mechanics-based method for connection near wellbore stress measurements to stresses away from the well-bore. This presentation was featured in the Utah FORGE R&D Annual Workshop on August 14, 2024.

15 GEOTHERMAL ENERGY↗

Soil architecture and subsurface stratigraphic heterogeneities across land-lake interfaces along Lake Erie.

Uploaded raw datasets from electrical resistivity tomography (ERT), ground penetrating radar (GPR), electromagnetic induction (EMI) and insitu sensors were acquired across land-lake interfaces along Lake Erie. These datasets were useful to delineate the soil architecture and subsurface stratigraphic heterogeneities. We combined multiple geophysical methods with lithostratigraphic logs from borehole cores and data from soil and borehole sensors to investigate spatial heterogeneities across land-lake interfaces. The apparent electrical conductivity (Eca) maps matched closely with the soil maps from public database and also detected additional soil units that were missing in the traditional soil maps. This implies that electromagnetic induction (EMI) could be relied upon for non invasive characterization of soils in sampling restricted sites where only non-invasive measurements are feasible. Results from electrical resistivity tomography (ERT) and Ground penetrating radar (GPR) are consistent with the surficial geology of the study area, and revealed that the vertical variabilities at the sites are mainly driven by stratigraphy.The ERT data (.stg) were acquired from three different sites portage river (PTR), crane creek (CRC) and old woman creek (OWC). The ".stg" files can be opened with ERT inversion software such as EarthImager, ResIpy or Res2DInv. The GPR data (.GPZ) were also acquired from the three sites, and the ".GPZ" data files can be opened with EKKO_project 5 software from Sensors & Software Inc., or with any other standard GPR software. The EM data (.csv) were acquired from the three sites while the soil sensor data (.csv) here were acquired only from crane creek site. The ".csv) files can be opened with MS Excel or any other spread sheet software.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux FLUXNET-1F US-Hn2 Hanford 100H grassland

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Hn2 Hanford 100H grassland. This is the FLUXNET version of the carbon flux data for the site US-Hn2 Hanford 100H grassland produced by applying the standard ONEFlux (1F) software. Site Description - The site is a riparian grassland ecosystem characterized by a shallow water table.

Liu, Heping↗

Business Environment Study (Subtask 5.1)

In 2016, WVR acquired the Wabash Integrated Gasification Combined Cycle (IGCC) Plant north of Terre Haute, Indiana. Initially, WVR intended to use the plant to produce ammonia using syngas converted to hydrogen. Part of the business plan was to capture and sequester the CO 2 byproduct with the goal of a net-zero carbon emitting plant. Now, with the demand for clean hydrogen-based power and fuel cell energy, the plant intends to produce power and sell hydrogen as a fuel source, still with the intent to sequester CO 2 and achieve net-zero emissions. The Wabash CarbonSAFE project’s objectives are to establish the feasibility of developing a commercial-scale geological storage complex at the WVR plant in Vigo County, Indiana, for storage of 50 million tonnes or more of CO 2 . The plant is expected to produce up to 2 million tons (1.82 million tonnes) of CO 2 annually as a byproduct of hydrogen production. Wabash CarbonSAFE has examined the feasibility of geologic storage of the CO 2 in the Potosi Dolomite Storage Complex of the Illinois Basin via an onsite characterization well at the WVR plant site. This document explores the business requirements to undertake such a project, outlining the outside influences on a business venture such as legislation, legal, regulatory, and business climate factors. This document then discusses the CO 2 source, potential partner sources, and the business financials that allow CCS to be commercially viable for Wabash Valley Resources.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Nuclear Emergency Support Team Public Health and Safety [Slides]

RAP is the nation’s premier first-response resource for advising Federal, state, local and tribal decision-makers on steps to take to evaluate and minimize the hazards of a radiological or nuclear incident. RAP support ranges from giving technical information or advice over the telephone to sending highly trained personnel with state-of-the-art equipment to the incident site where team members help identify, characterize and minimize any radiological or nuclear hazards.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Screening and Identifying High-Suitability Offshore CCUS Storage Areas in the Gulf of Mexico Using a Multi-Criteria Evaluation Approach

Poster presented at a virtual meeting for the AAPG Annual Conference and Exhibition held in Houston, Texas, September 29 to October 1, 2020. The poster describes a method to analyze multiple criteria defining potentially suitable CO2 saline storage sites or CO2-EOR sites with associated storage of CO2 in the Gulf of Mexico. These sites would require further analysis and characterization.

Wendt, Anna↗

Report on the recovery of legacy 1997-1998 Depth-of-Burial / Tunnel-and-Hole-Closure explosion data from the Kazakhstan former Soviet nuclear test site, Semipalatinsk.

In 1996, negotiations between the National Nuclear Center of the Republic of Kazakhstan (NNC), the U.S. Defense Special Weapons Administration (DSWA) and the U.S. Department of Energy led to an agreement for a joint series of experiments at the former Soviet nuclear test site Semipalatinsk (STS). These experiments had a dual purpose: to close holes and tunnels originally created for the purpose of testing nuclear weapons, and to characterize explosive sources at a former nuclear test site. This report covers the recovery of legacy data from the experiments conduct in 1997 and 1998. Two teams collected data. Los Alamos National Laboratory (LANL), in collaboration with the NNC, collected the near-source (local) data out to approximately 20 km. Lamont-Doherty Earth Observatory (LDEO), with funding from Lawrence Livermore Laboratory (LLNL), also in collaboration with NNC, collected regional data, 200 – 1000 km distant, leveraging the KZ regional seismic network that LDEO had recently installed in collaboration with NNC. The two teams also worked together to some extent, regarding instrumentation and planning. This report primarily addresses the near-source data collected by the LANL/NNC team.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Hydrologic Evaluation of Smallmouth Bass Spawning Sites in the Upper Green River Using LiDAR

The smallmouth bass has been considered one of the most problematic invasive species in the upper Colorado River basin. As a predator of larval fish and juveniles, this nonnative species is an impediment to conservation efforts for endangered fish species of the Colorado River basin including Colorado pikeminnow (Ptychocheilus lucius), razorback sucker (Xyrauchen texanus), humpback chub (Gila cypha), and bonytail chub (Gila elegans). Several measures have been recommended to control smallmouth bass populations to conserve the endangered fish species. Among these measures are efforts to control flows during the spawning season to disrupt smallmouth bass reproduction. Previous work has suggested that smallmouth bass spawning in areas of the Green River could be inhibited during higher flows from the Flaming Gorge Dam due to lack of suitable habitat. Little research has been conducted to evaluate an optimal range of flow increases (“flow spikes”) needed to disrupt smallmouth bass reproduction in the Green River. Current research proposals to evaluate the effectiveness of flow spikes on controlling smallmouth bass reproduction target post-spawning flows of 4,500 cfs, maintained for three days, to inundate side-channel spawning habitats. In this report, we present results of a topographic study of smallmouth bass spawning sites in the upper Green River to characterize flow levels needed to inundate spawning habitats. This study used remotely sensed Light Detection and Ranging (LiDAR) data collected along the entire Green River, including channel margins and floodplain areas, to model water surface elevations and flow spikes needed to connect and inundate smallmouth bass spawning sites.

59 BASIC BIOLOGICAL SCIENCES↗

Characterizing the multi-dimensional reaction dynamics of dihalomethanes using XUV-induced Coulomb explosion imaging

Site-selective probing of iodine 4d orbitals at 13.1 nm was used to characterize the photolysis of CH 2 I 2 and CH 2 BrI initiated at 202.5 nm. Time-dependent fragment ion momenta were recorded using Coulomb explosion imaging mass spectrometry and used to determine the structural dynamics of the dissociating molecules. Correlations between these fragment momenta, as well as the onset times of electron transfer reactions between them, indicate that each molecule can undergo neutral three-body photolysis. For CH 2 I 2 , the structural evolution of the neutral molecule was simultaneously characterized along the C–I and I–C–I coordinates, demonstrating the sensitivity of these measurements to nuclear motion along multiple degrees of freedom.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

ESI-FTICR-MS Analysis of Organic Matter during Incubations with Nitrogen Addition, Teller Road Site, Seward Peninsula, Alaska

This dataset contains the results of the molecular characterization of water-extractable organic matter collected during soil microcosm incubations of tundra soil. The microcosms contained soil collected in April 2017 from the NGEE Arctic Teller Road Site at mile marker 27 (TL_MM27) near Intensive Site 9 (“Toeslope”) and Intensive Site 5 (“Plateau”). The incubations were conducted under an atmosphere of N2 at 8°C for 55 days, with or without addition of ammonium chloride (NH4Cl). Soils were extracted with deionized water and extracted using Bond Elut PPL cartridges prior to analysis. Molecular characterization was performed using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI- FTICR-MS). Two data files are provided with this dataset. The first is the summary, by soil type and treatment, of the mass spectrometry results for formulas (as a % of the total) containing C, H, and O only, and with N, S, and other elements. These formulas were then grouped into nine biochemical classes of compounds based on O:C and H:C ratios. The second file provides soil sample characteristics and the processed high-resolution mass spectrometry results by soil type and treatment.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 10-year research effort (2012-2022) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy’s Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy’s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Active Seismoelectric Monitoring of CO 2 Injection

Conference presentation at Carbon Capture, Utilization, and Storage (CCUS) Conference 2024, Houston, Texas, March 11–13, 2024. We investigated the use of active seismoelectric monitoring (ASE) to determine its effectiveness in detecting CO 2 injected deep underground and as an additional monitoring option for carbon storage projects. The EERC performed an ASE survey in February of 2023 at Pennel oil field near Baker, Montana, as part of the U.S. Department of Energy-sponsored Williston Basin CO 2 Field Laboratory in conjunction with operating partner Denbury Inc. The field site is part of the Cedar Creek Anticline geologic structure, with CO 2 planned for injection into a stacked storage complex (SSC) in the Interlake Formation containing both a residual oil zone and a conventional reservoir. The objective was to test the ASE method’s ability to characterize baseline fluid distribution in both the near surface and the SSC prior to CO 2 injection.

04 OIL SHALES AND TAR SANDS↗