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At least 415 records · Page 23

Application of Lidar-Radar Combined Data Products during the IMPACTS 2020 Field Campaign

The Investigation of Microphysics and Precipitation for Atlantic Coast-Threatening Snowstorms (IMPACTS) is a three-year field campaign investigating the formation and lifecycle of banded, precipitation structures within intense wintertime cyclones impacting the highly-populated northeast United States. Unlike previous campaigns in the region, IMPACTS mission scientists have access to and coordinate the NASA ER-2 and P-3 aircraft to collect observations from both a remote sensing and in-situ perspective, respectively. For IMPACTS, the ER-2 aircraft was equipped with lidar (CPL), radar (CRS, HIWRAP, EXRAD), microwave radiometer (CoSMIR, AMPR) instruments, each with their own unique capabilities and limitations. Our on-going work effort aims to develop IMPACTS lidar and radar merged data products, which can be used to supplement the raw data sources, tease out additional aspects of the mechanisms underpinning wintertime cyclones, and enhance our understanding of microphysical properties in sensor overlap regions. Preliminary merged data products combine CPL lidar with any one of the NASA High Altitude Radar (HAR) radar products (CRS, HIWRAP, EXRAD) and represent these data as both normalized values and translated to reflectivity signal (dB). Continuing work will further refine our merged data product algorithm to provide additional information on hydrometeor species identification, ice crystal habit, and ice-water content, which will help IMPACTS achieve its mission goal of improving microphysical properties retrievals from both airborne and spaceborne platforms.

Stephen D. Nicholls↗

Smc-Last Point Source Catalog Spitzer'S Last Survey of the Small Magellanic Cloud

We present a processing for the point source catalog derived from Spitzer's final two surveys of the Small Magellanic Cloud (SMC). These 2017-2018 maps duplicate the footprint from the SAGE-SMC program from 2008 and were obtained at 3.6 and 4.5 μm with the Infrared Array Camera (IRAC). They provide a nearly 10-year baseline of all observations of the SMC made by Spitzer. We extracted point sources from both the basic calibrated data (BCD) as well as the final processed mosaics. We did not use any prior catalogs as inputs in order to search for moving objects (e.g., foreground brown dwarfs) and other transient phenomena. The extractions from two test fields are shown here: a field sparsely populated with stars and a second containing more complicated structures. Comparing our extractions between both of our epochs and with the SAGE epochs shows the completeness and range of our survey. The mosaics are currently available on the Infrared Science Archive (IRSA) and the Harvard Dataverse. The final point source catalog will be available at both archives, as well. This work is supported by NASA Award 80NSSC19K0585.

Thomas Kuchar↗

Unveiling the Journey of A Highly Inclined CME: Insights from the March 13, 2012, Event With 110° Longitudinal Separation

Context. A fast (∼2000 km s -1 ) and wide (>110°) coronal mass ejection (CME) erupted from the Sun on March 13, 2012. Its interplanetary counterpart was detected in situ two days later by STEREO-A and near-Earth spacecraft, such as ACE, Wind, and Cluster. We suggest that at 1 au the CME extended at least 110° in longitude, with Earth crossing its east flank and STEREO-A crossing its- west flank. Despite their separation, measurements from both positions showed very similar in situ CME signatures. The solar source region where the CME erupted was surrounded by three coronal holes (CHs). Their locations with respect to the CME launch site were east (negative polarity), southwest (positive polarity) and west (positive polarity). The solar magnetic field polarity of the area covered by each CH matches that observed at 1 au in situ. Suprathermal electrons at each location showed mixed signatures with only some intervals presenting clear counter streaming flows as the CME transits both locations. The strahl population coming from the shortest magnetic connection of the structure to the Sun showed more intensity. Aims. The aim of this work is to understand the propagation and evolution of the CME and its interaction with the surrounding CHs, to explain the similarities and differences between the observations at each spacecraft, and report what one of the most longitudinal expanded CME structures measured in situ would be. Methods. Known properties of the large-scale structures from a variety of catalogues and previous studies were used to have a better overview of this particular event. In addition, multipoint observations were used to reconstruct the 3D geometry of the CME and determine the context of the solar and heliospheric conditions before the CME eruption and during its propagation. The graduated cylindrical shell model (GCS) was used to reproduce the orientation, size and speed of the structure with a simple geometry. Also, the Drag-Based Model (DBM) was utilised to understand the conditions of the interplanetary medium better in terms of the drag undergone by the structure while propagating in different directions. Finally, a comparative analysis of the different regions of the structure through the different observatories was carried out in order to directly compare the in situ plasma and magnetic field properties at each location. Results. The study presents important findings regarding the in situ measured CME on March 15, 2012, detected at a longitudinal separation of 110° in the ecliptic plane despite its initial inclination being around 45° when erupted (March 13). This suggests that the CME may have deformed and/or rotated, allowing it to be observed near its legs with spacecraft at a separation angle greater than 100°. The CME structure interacted with high-speed streams generated by the surrounding CHs. The piled-up plasma in the sheath region exhibited an unexpected correlation in magnetic field strength despite the large separation in longitude. In situ observations reveal that at both locations there was a flank encounter – where the spacecraft crossed the first part of the CME – then encountered ambient solar wind, and finally passed near the legs of the structure. Conclusions. A scenario covering all evidence is proposed for both locations with a general view of the whole structure and solar wind conditions. Also, the study shows the necessity of having multipoint observations of large-scale structures in the heliosphere.

methods: data analysis↗

Coagulation of grains in static and collapsing protostellar clouds

We simulate collisional evolution of grains in dense turbulent molecular cloud cores (or Bok globules) in static equilibrium and free-fall collapse, assuming spherical symmetry. Relative velocities are due to thermal motions, differential settling, and turbulence, with the latter dominant for sonic turbulence with an assumed Kolmogorov spectrum. Realistic criteria are used to determine outcomes of collisions (coagulation vs. destruction) as functions of particle size and velocity. Results are presented for a variety of cloud parameters (radial density profile, turbulent velocity) and particle properties (density, impact strength). Results are sensitive to the assumed mechanical properties (density and impact strength) of grain aggregates. Particle growth is enhanced if aggregates have low density or fractal structures. On a timescale of a few Myr, an initial population of 0.1 micrometers grains may produce dense compact particles approximately 1 micrometer in size, or fluffy aggregates approximately 100 micrometers. For impact strengths less than or equal to 10(exp 6) ergs/g, a steady state is reached between coagulation of small grains and collisional disruption of larger aggregates. Formation of macroscopic aggregates requires high mechanical strengths and low aggregate densities. We assume sonic turbulence during collapse, with varied eddy size scales determining the dissipation rate or turbulence strength. The degree of collisional evolution during collapse is sensitive to the assumed small-scale structure (inner sc ale) of the turbulence. Weak turbulence results in few collisions and preserves the precollapse particle size distribution with little change. Strong turbulence tends to produce net destruction, rather than particle growth, during infall, unless inpact strengths are greater than 10(exp 6)ergs/g.

Weidenschilling, S. J.↗

Regulation of translation by ribosomal RNA pseudouridylation

Pseudouridine is enriched in ribosomal, spliceosomal, transfer, and messenger RNA and thus integral to the central dogma. The chemical basis for how pseudouridine affects the molecular apparatus such as ribosome, however, remains elusive owing to the lack of structures without this natural modification. Here, we studied the translation of a hypopseudouridylated ribosome initiated by the internal ribosome entry site (IRES) elements. We analyzed eight cryo–electron microscopy structures of the ribosome bound with the Taura syndrome virus IRES in multiple functional states. We found widespread loss of pseudouridine-mediated interactions through water and long-range base pairings. In the presence of the translocase, eukaryotic elongation factor 2, and guanosine 5'-triphosphate hydrolysis, the hypopseudouridylated ribosome favors a rare unconducive conformation for decoding that is partially recouped in the ribosome population that remains modified at the P-site uridine. The structural principles learned establish the link between functional defects and modification loss and are likely applicable to other pseudouridine-associated processes.

59 BASIC BIOLOGICAL SCIENCES↗

Gas phase protonated nicotine is a mixture of pyridine- and pyrrolidine-protonated conformers: implications for its native structure in the nicotinic acetylcholine receptor

The infrared (IR) spectra of gas phase protonated nicotine has been measured in the never-before probed N–H “fingerprint region” (3200–3500 cm -1 ). The protonated molecules generated by an electrospray source are thermalized in the first ion trap with water vapor and He gas at a pre-determined temperature prior to being probed by IR spectroscopy in the second ion trap at 4 K. The IR spectra exhibit two N–H stretching bands which are assigned to the pyridine and pyrrolidine protomers with the aid of high-level electronic structure calculations. This finding is in sharp contrast to previous spectroscopic studies that suggested a single population of the pyridine protomer. The relative populations of the two protomers vary by changing the temperature of the thermalizing trap from 180-300 K. The relative conformer populations at 240 K and 300 K are well reproduced by the theoretical calculations, unequivocally determining that gas phase nicotine is a 3 : 2 mixture of both pyridine and pyrrolidine protomers at room temperature. The thermalizing anhydrous vapor does not result in any population change. It rather demonstrates the catalytic role of water in achieving equilibrium between the two protomers. The combination of IR spectroscopy and electronic structure calculations establish the small energy difference between the pyridine and pyrrolidine protomers in nicotine. Finally, one of the gas phase nicotine pyrrolidine protomers has the closest conformational resemblance among all low-lying energy isomers with the X-ray structure of nicotine in the nicotinic acetylcholine receptor (nAChR).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Phase Space Structure Near Neptune Resonances in the Kuiper Belt

The Solar system beyond Neptune is believed to house a population of small primordial bodies left over from the planet formation process. The region up to heliocentric distance -50 AU (a.k.a. the Kuiper Belt) may be the source of the observed short-period comets. In this region, the phase space structure near orbital resonances with Neptune is of special interest for the long-term stability of orbits. There is reason to believe that a significant fraction (perhaps most) of the Kuiper Belt objects reside preferentially in these resonance locations. This paper describes the dynamics of small objects near the major orbital resonances with Neptune. Estimates of the widths of stable resonance zones as well as the properties of resonant orbits are obtained from the circular, planar restricted three-body model. Although this model does not contain the full complexity of the long-term orbital dynamics of Kuiper Belt objects subject to the full N-body perturbations of all the planets, it does provide a baseline for the phase space structure and properties of resonant orbits in the trans-Neptunian Solar system.

Malhotra, Renu↗

Optimal Configuration of an Array of Tabs for Mixing Enhancement in a Shear Layer

The large and small scale vortical motions produced by delta tabs in a two-stream shear layer have been studied experimentally. The tabs were placed at the trailing edge of a splitter plate, mounted in the test section of a wind tunnel, that produced the shear layer. Hot-wire measurements detailed the velocity, vorticity and small scale population distributions in the 3-D space behind the tabs. Small scale structures, which represent the peak in the dissipation spectrum, were identified and counted using the Peak-Valley-Counting technique. The optimal tab inclination angle, theta, and the optimal spanwise spacing, S, for a multiple tab array were identified. The optimal condition was that which maximized the small scale population and generated the strongest streamwise vorticity. Increasing the tab pitch angle from flush to normal to the splitter plate increased the streamwise vorticity as well as the overall small scale population. In fact, the increase in the overall small scale population correlated strongly with the increase in streamwise vorticity intensity. The optimal conditions for peak streamwise vorticity and peak small scale population, with minimum area blockage, were determined to be theta = 45deg and S = 1.5 tab widths.

Foss, J. K.↗

Impacts on Explorer 46 from an Earth orbiting population

Explorer 46 was launched into Earth orbit in August 1972 to evaluate the effectiveness of using double-wall structures to protect against meteoroids. The data from the Meteoroid Bumper Experiment on Explorer 46 is reexamined and it is concluded that most of the impacts originated from an Earth orbiting population. The probable source of this orbiting population is solid rocket motors fired in Earth orbit.

Kessler, D. J.↗

Intersubband Auger recombination and population inversion in quantum-well subbands

The intersubband-Auger-recombination time of electrons under population-inversion conditions in a single quantum well is calculated by taking into account momentum- and energy-conservation rules, and by employing Fermi-Dirac statistics. The screened matrix element of the electron-electron interaction and the overlap integral are calculated for an infinitely deep quantum well. The results are in a good agreement with published experimental data. As a major nonradiative process, the Auger recombination is related to threshold current of infrared lasers based on intersubband transitions in quantum-well structures. The realization of these devices and other limitations to achieving population inversion are discussed. In view of the results, development of these lasers for emission wavelengths corresponding to energies below the LO-phonon energy seems feasible.

Borenstain, S.↗

Mapathons versus automated feature extraction: a comparative analysis for strengthening immunization microplanning

Background: Social instability and logistical factors like the displacement of vulnerable populations, the difficulty of accessing these populations, and the lack of geographic information for hard-to-reach areas continue to serve as barriers to global essential immunizations (EI). Microplanning, a population-based, healthcare intervention planning method has begun to leverage geographic information system (GIS) technology and geospatial methods to improve the remote identification and mapping of vulnerable populations to ensure inclusion in outreach and immunization services, when feasible. We compare two methods of accomplishing a remote inventory of building locations to assess their accuracy and similarity to currently employed microplan line-lists in the study area. Methods: The outputs of a crowd-sourced digitization effort, or mapathon, were compared to those of a machine-learning algorithm for digitization, referred to as automatic feature extraction (AFE). The following accuracy assessments were employed to determine the performance of each feature generation method: (1) an agreement analysis of the two methods assessed the occurrence of matches across the two outputs, where agreements were labeled as “befriended” and disagreements as “lonely”; (2) true and false positive percentages of each method were calculated in comparison to satellite imagery; (3) counts of features generated from both the mapathon and AFE were statistically compared to the number of features listed in the microplan line-list for the study area; and (4) population estimates for both feature generation method were determined for every structure identified assuming a total of three households per compound, with each household averaging two adults and 5 children. Results: The mapathon and AFE outputs detected 92,713 and 53,150 features, respectively. A higher proportion (30%) of AFE features were befriended compared with befriended mapathon points (28%). The AFE had a higher true positive rate (90.5%) of identifying structures than the mapathon (84.5%). The difference in the average number of features identified per area between the microplan and mapathon points was larger (t = 3.56) than the microplan and AFE (t = -2.09) (alpha = 0.05). Conclusions: Our findings indicate AFE outputs had higher agreement (i.e., befriended), slightly higher likelihood of correctly identifying a structure, and were more similar to the local microplan line-lists than the mapathon outputs. These findings suggest AFE may be more accurate for identifying structures in high-resolution satellite imagery than mapathons. However, they both had their advantages and the ideal method would utilize both methods in tandem.

59 BASIC BIOLOGICAL SCIENCES↗

Carbohydrate Deacetylase Unique to Gut Microbe Bacteroides Reveals Atypical Structure

Bacteroides are often the most abundant, commensal species in the gut microbiome of industrialized human populations. One of the most commonly detected species is Bacteroides ovatus. It has been linked to benefits like the suppression of intestinal inflammation but is also correlated with some autoimmune disorders, for example irritable bowel disorder (IBD). Bacterial cell surface carbohydrates, like capsular polysaccharides (CPS), may play a role in modulating these varied host interactions. Recent studies have begun to explore the diversity of CPS loci in Bacteroides; however, there is still much unknown. Here, we present structural and functional characterization of a putative polysaccharide deacetylase from Bacteroides ovatus (BoPDA) encoded in a CPS biosynthetic locus. We solved four high resolution crystal structures (1.36-1.56 Å) of the enzyme bound to divalent cations Co 2+ , Ni 2+ , Cu 2+ , or Zn 2+ and performed carbohydrate binding and deacetylase activity assays. Structural analysis of BoPDA revealed an atypical domain architecture that is unique to this enzyme, with a carbohydrate esterase 4 (CE4) superfamily catalytic domain inserted into a carbohydrate binding module (CBM). Additionally, BoPDA lacks the canonical CE4 His-His-Asp metal binding motif and our structures show it utilizes a noncanonical His-Asp dyad to bind metal ions. BoPDA is the first protein involved in CPS biosynthesis from B. ovatus to be characterized, furthering our understanding of significant biosynthetic processes in this medically relevant gut microbe.

59 BASIC BIOLOGICAL SCIENCES↗

The cosmic waltz of Coma Berenices and Latyshev 2 (Group X)

Context. Open clusters (OCs) are fundamental benchmarks where theories of star formation and stellar evolution can be tested and validated. Coma Berenices (Coma Ber) and Latyshev 2 (Group X) are the second and third OCs closest to the Sun, making them excellent targets to search for low-mass stars and ultra-cool dwarfs. In addition, this pair will experience a flyby in 10–16 Myr, making it a benchmark to test pair interactions of OCs. Aims. We aim to analyse the membership, luminosity, mass, phase-space (i.e. positions and velocities), and energy distributions for Coma Ber and Latyshev 2 and test the hypothesis of the mixing of their populations at the encounter time. Methods. We developed a new phase-space membership methodology and applied it to Gaia data. With the recovered members, we inferred the phase-space, luminosity, and mass distributions using publicly available Bayesian inference codes. Then, with a publicly available orbit integration code and members’ positions and velocities, we integrated their orbits 20 Myr into the future. Results. In Coma Ber, we identified 302 candidate members distributed in the core and tidal tails. The tails are dynamically cold and asymmetrically populated. The stellar system called Group X is made of two structures: the disrupted OC Latyshev 2 (186 candidate members) and a loose stellar association called Mecayotl 1 (146 candidate members), and both of them will fly by Coma Ber in 11.3 ± 0.5 Myr and 14.0 ± 0.6 Myr, respectively, and each other in 8.1 ± 1.3 Myr. Conclusions. We study the dynamical properties of the core and tails of Coma Ber and also confirm the existence of the OC Latyshev 2 and its neighbour stellar association Mecayotl 1. Although these three systems will experience encounters, we find no evidence supporting the mixing of their populations.

79 ASTRONOMY AND ASTROPHYSICS↗

Exciton energy transfer reveals spectral signatures of excited states in clusters

Electronic excitation and concomitant energy transfer leading to Penning ionization in argon–acetylene clusters generated in a supersonic expansion are investigated with synchrotron-based photoionization mass spectrometry and electronic structure calculations. Spectral features in the photoionization efficiency of the mixed argon–acetylene clusters reveal a blue shift from the 2 P 1/2 and 2 P 3/2 excited states of atomic argon. Analysis of this feature suggests that excited states of argon clusters transfer energy to acetylene, resulting in its ionization and successive evaporation of argon. Theoretically calculated Ar n (n = 2–6) cluster spectra are in excellent agreement with experimental observations, and provide insight into the structure and ionization dynamics of the clusters. A comparison between argon–acetylene and argon–water clusters reveals that argon solvates water better, allowing for higher-order excitons and Rydberg states to be populated. Furthermore, these results are explained by theoretical calculations of respective binding energies and structures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Particle and field stress balance within a planetary magnetosphere

A technique is developed for experimentally estimating the local tensor stresses within a planetary magnetic field configuration characterized by local spacecraft measurements. Key to the technique is the determination of the shapes of field lines using the symmetry properties of the system coupled with local and instantaneous measurements of the field line inclination angles. The technique is applied here to the inner and middle Saturnian magnetosphere using data returned by the Magnetic Field Experiment on the Voyager 1 spacecraft. It is concluded that the ring current has substantial radial structure, heretofore not shown. Outside about 13 R(s) the newly derived field stresses match remarkably well the funtional variation of the centrifugal corotation stresses of the cool particle population measured previously by the Plasma Science Experiment. Inside about 13 R(s) the key structure in the derived field stresses, a prominent local maximum, matches the approximate position of an apparent strong pressure gradient in the energetic particles characterized by the Low-Energy Charged Particle detectors.

Mauk, B. H.↗

Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction

Abstract Background Plant cell walls are interwoven structures recalcitrant to degradation. Native and adapted microbiomes can be particularly effective at plant cell wall deconstruction. Although most understanding of biological cell wall deconstruction has been obtained from isolates, cultivated microbiomes that break down cell walls have emerged as new sources for biotechnologically relevant microbes and enzymes. These microbiomes provide a unique resource to identify key interacting functional microbial groups and to guide the design of specialized synthetic microbial communities. Results To establish a system assessing comparative microbiome performance, parallel microbiomes were cultivated on sorghum ( Sorghum bicolor L. Moench) from compost inocula. Biomass loss and biochemical assays indicated that these microbiomes diverged in their ability to deconstruct biomass. Network reconstructions from gene expression dynamics identified key groups and potential interactions within the adapted sorghum-degrading communities, including Actinotalea , Filomicrobium , and Gemmatimonadetes populations. Functional analysis demonstrated that the microbiomes proceeded through successive stages that are linked to enzymes that deconstruct plant cell wall polymers. The combination of network and functional analysis highlighted the importance of cellulose-degrading Actinobacteria in differentiating the performance of these microbiomes. Conclusions The two-tier cultivation of compost-derived microbiomes on sorghum led to the establishment of microbiomes for which community structure and performance could be assessed. The work reinforces the observation that subtle differences in community composition and the genomic content of strains may lead to significant differences in community performance.

59 BASIC BIOLOGICAL SCIENCES↗

Uniaxial Strain Tuned Magnetism of the Altermagnet Candidate H-FeS

Altermagnets are a newly recognized class of magnetic materials characterized by compensated spin configurations while still breaking time-reversal symmetry and exhibiting unconventional transport phenomena. Hexagonal FeS (h-FeS) is a recently identified altermagnet candidate that shows a spontaneous anomalous Hall effect (AHE) accompanied by a tiny net magnetization. Here, we show that both the spontaneous AHE and magnetization can be effectively suppressed by an in-plane compressive strain. Since neutron diffraction measurements show that the applied uniaxial strain only modifies the in-plane domain population but does not affect the in-plane magnetic structure, the major effect of the applied strain is to tune the small 𝑐-axis ferromagnetic moment. Our results demonstrate a strong correlation between the tiny net magnetization and the spontaneous AHE in h-FeS, and show that uniaxial strain provides an effective knob to tune both properties in this altermagnet candidate for spintronic applications.

Yao, Weiliang [ORNL]↗

Formulation and solution approach for calibrating activity-based travel demand model-system via microsimulation

This study addresses the problem of calibrating utility-maximizing nested logit activity-based travel demand model-systems. After estimation, it is common practice to use aggregate measurements to calibrate the estimated model-system’s parameters prior to their application in transportation planning, policy making, and operations. However, calibration of activity-based model-systems has received much less attention. Existing calibration approaches are myopic heuristics in the sense that they do not consider the fundamental inter-dependencies among choice-models and do not have a systematic way to adjust model parameters. Also, other purely simulation-based approaches do not perform well in large-scale applications. In this study, we focus on utility-maximizing nested logit activity-based model-systems and calibrating aggregate statistics such as activity shares, mode shares, time-dependent & mode-specific OD flows, and time-dependent & mode-specific sensor counts. We formulate the calibration problem as a simulation-based optimization problem and propose a stochastic gradient-based solution procedure to solve it. The solution procedure relies on microsimulation to calculate expectations of the aggregate statistics of interest to the calibration problem. Additionally, we derive approximate analytical expressions for the gradient of the objective function —that are evaluated through microsimulation on mini-batches of the population. The proposed solution procedure is sensitive to the fundamental structure of the activity-based model-system and is non-myopic in considering the dependencies across its model components. The formulated optimization problem is non-convex, highly nonlinear, and potentially has multiple-minima. Lastly, we show —through a real-world application— that the proposed solution procedure outperforms other state-of-the-art purely simulation-based optimization approaches in terms of computational efficiency, stability, and convergence. We also compare various gradient-based solution algorithms to determine the best algorithm to update the parameters. This work has the potential to facilitate wider and easier application of activity-based model-systems.

97 MATHEMATICS AND COMPUTING↗