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At least 415 records · Page 23

The ARM Data-oriented Metrics and Diagnostics Package for Climate Models - A New Tool for Evaluating Climate Models with Field Data

The U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) program User Facility produces ground-based long-term continuous unique measurements for atmospheric state, precipitation, turbulent fluxes, radiation, aerosol, cloud and the land surface, which are collected at multiple sites. These comprehensive datasets have been widely used to calibrate climate models and are proven to be invaluable for climate model development and improvement. This article introduces an evaluation package to facilitate the use of ground-based ARM measurements in climate model evaluation. The ARM data-oriented metrics and diagnostics package (ARM-DIAGS) includes both ARM observational datasets and a Python-based analysis toolkit for computation and visualization. The observational datasets are compiled from multiple ARM data products and specifically tailored for use in climate model evaluation. In addition, ARM-DIAGS also includes simulation data from models participating the Coupled Model Inter-comparison Project (CMIP), which will allow climate-modeling groups to compare a new, candidate version of their model to existing CMIP models. The analysis toolkit is designed to make the metrics and diagnostics quickly available to the model developers.

54 ENVIRONMENTAL SCIENCES↗

Evaluating Climate Models with the CLIVAR 2020 ENSO Metrics Package

El Niño–Southern Oscillation (ENSO) is the dominant mode of interannual climate variability on the planet, with far-reaching global impacts. It is therefore key to evaluate ENSO simulations in state-of-the-art numerical models used to study past, present, and future climate. Recently, the Pacific Region Panel of the International Climate and Ocean: Variability, Predictability and Change (CLIVAR) Project, as a part of the World Climate Research Programme (WCRP), led a community-wide effort to evaluate the simulation of ENSO variability, teleconnections, and processes in climate models. The new CLIVAR 2020 ENSO metrics package enables model diagnosis, comparison, and evaluation to 1) highlight aspects that need improvement; 2) monitor progress across model generations; 3) help in selecting models that are well suited for particular analyses; 4) reveal links between various model biases, illuminating the impacts of those biases on ENSO and its sensitivity to climate change; and to 5) advance ENSO literacy. By interfacing with existing model evaluation tools, the ENSO metrics package enables rapid analysis of multipetabyte databases of simulations, such as those generated by the Coupled Model Intercomparison Project phases 5 (CMIP5) and 6 (CMIP6). The CMIP6 models are found to significantly outperform those from CMIP5 for 8 out of 24 ENSO-relevant metrics, with most CMIP6 models showing improved tropical Pacific seasonality and ENSO teleconnections. Only one ENSO metric is significantly degraded in CMIP6, namely, the coupling between the ocean surface and subsurface temperature anomalies, while the majority of metrics remain unchanged.

54 ENVIRONMENTAL SCIENCES↗

Development and verification of the pyIsoDep depletion package for nuclear thermal propulsion reactors

Nuclear thermal propulsion technology is currently being developed by the National Air and Space Administration for future manned Mars missions. There are multiple on-going activities to develop and enhance computational capabilities, single- and multi-physics, to advance the readiness level of this technology. The prediction of short-lived fission products is crucial to understand the reactivity penalty and the decay heat production during the different burnout stages of the vehicle. Generally, the solution entails coupled neutronic-depletion analysis. However, such simulations are somewhat expensive, especially if the duration of each engine burn is to be optimized. Therefore, there is a need to complement such high-fidelity techniques with time-efficient alternatives that do not require the sequential neutronic and depletion analysis. This paper details the methods and capabilities of pyIsoDep, an open-source code used for depletion analysis of nuclear thermal propulsion reactors. The package is general, in principle, and thus can be applied to any fission system, and can potentially be extended for fusion systems. The package was developed to provide a flexible and efficient alternative to pre-existing higher order depletion codes that could integrate well into mission and transient analysis of nuclear thermal propulsion reactors. Finally, this paper presents a validation and verification of pyIsoDep against analytical and Serpent-generated solutions. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

bmdrc: Python package for quantifying phenotypes from chemical exposures with benchmark dose modeling

Though chemical exposures are known to potentially have negative impacts on health, including contributing to chronic diseases such as cancer, the quantitative contribution of risk is not fully understood for every chemical. A commonly used approach to quantify levels of risk is to measure the proportion of organisms (such as a total number of zebrafish on a plate or mice in a cage) with abnormal behavioral responses or morphology at increasing concentrations of chemical exposure. A particular challenge with processing the proportional data from these assays is the appropriate estimation of chemical concentration levels that result in malformations or acute toxicity, as these values typically vary between experimental measurements. The recommended approach by the Environmental Protection Agency (EPA) is to fit benchmark dose curves with specific filters and model fitting steps, which are crucial to properly processing the proportional data. Several tools exist for the fitting of benchmark dose response curves, but none are standalone Python libraries built to process both morphological and behavioral data as proportions with all the EPA recommended filters, filter parameters, models, and model parameters. Thus, here we present the benchmark dose response curve (bmdrc) Python library, which was built to closely follow these EPA guidelines with helpful visualizations of filters and fitted model curves, and reports for reproducibility purposes. bmdrc is open-source and has demonstrated utility as a support package to an existing web portal for information on chemicals (https://srp.pnnl.gov). Our package will support any toxicology analysis where the response is a proportional value at increasing levels of a concentration of a chemical or chemical mixture.

Superfund↗

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

Rule-based modeling is an approach that permits constructing reaction networks based on the specification of rules for molecular interactions and transformations. These rules can encompass details such as the interacting sub-molecular domains and the states and binding status of the involved components. Conceptually, fine-grained spatial information such as locations can also be provided. Through “wildcards” representing component states, entire families of molecule complexes sharing certain properties can be specified as patterns. This can significantly simplify the definition of models involving species with multiple components, multiple states, and multiple compartments. The systems biology markup language (SBML) Level 3 Multi Package Version 1 extends the SBML Level 3 Version 1 core with the “type” concept in the Species and Compartment classes. Therefore, reaction rules may contain species that can be patterns and exist in multiple locations. Multiple software tools such as Simmune and BioNetGen support this standard that thus also becomes a medium for exchanging rule-based models. This document provides the specification for Release 2 of Version 1 of the SBML Level 3 Multi package. No design changes have been made to the description of models between Release 1 and Release 2; changes are restricted to the correction of errata and the addition of clarifications.

59 BASIC BIOLOGICAL SCIENCES↗

BASS: An R Package for Fitting and Performing Sensitivity Analysis of Bayesian Adaptive Spline Surfaces

In this work, we present the R package BASS as a tool for nonparametric regression. The primary focus of the package is fitting fully Bayesian adaptive spline surface (BASS) models and performing global sensitivity analyses of these models. The BASS framework is similar to that of Bayesian multivariate adaptive regression splines (BMARS) from Denison, Mallick, and Smith (1998), but with many added features. The software is built to efficiently handle significant amounts of data with many continuous or categorical predictors and with functional response. Under our Bayesian framework, most priors are automatic but these can be modified by the user to focus on parsimony and the avoidance of overfitting. If directed to do so, the software uses parallel tempering to improve the reversible jump Markov chain Monte Carlo (RJMCMC) methods used to perform inference. We discuss the implementation of these features and present the performance of BASS in a number of analyses of simulated and real data.

97 MATHEMATICS AND COMPUTING↗

`SkyPy`: A package for modelling the Universe

SkyPy is an open-source Python package for simulating the astrophysical sky. It comprises a library of physical and empirical models across a range of observables and a command-line script to run end-to-end simulations. The library provides functions that sample realisations of sources and their associated properties from probability distributions. Simulation pipelines are constructed from these models using a YAML-based configuration syntax, while task scheduling and data dependencies are handled internally and the modular design allows users to interface with external software. SkyPy is developed and maintained by a diverse community of domain experts with a focus on software sustainability and interoperability. By fostering development, it provides a framework for correlated simulations of a range of cosmological probes including galaxy populations, large scale structure, the cosmic microwave background, supernovae and gravitational waves. Version 0.4 implements functions that model various properties of galaxies including luminosity functions, redshift distributions and optical photometry from spectral energy distribution templates. Future releases will provide additional modules, for example, to simulate populations of dark matter halos and model the galaxy-halo connection, making use of existing software packages from the astrophysics community where appropriate.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

pvOps: a Python package for empirical analysis of photovoltaic field data

The purpose of pvOps is to support empirical evaluations of data collected in the field related to the operations and maintenance (O&M) of photovoltaic (PV) power plants. pvOps presently contains modules that address the diversity of field data, including text-based maintenance logs, current-voltage (IV) curves, and timeseries of production information. The package functions leverage machine learning, visualization, and other techniques to enable cleaning, processing, and fusion of these datasets. These capabilities are intended to facilitate easier evaluation of field patterns and extraction of relevant insights to support reliability-related decision-making for PV sites. The open-source code, examples, and instructions for installing the package through PyPI can be accessed through the GitHub repository.

14 SOLAR ENERGY↗

gcamfaostat: An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling

The gcamfaostat R package is designed for the preparation, processing, and synthesis of the Food and Agriculture Organization (FAO) Statistics (FAOSTAT) agroeconomic data. The primary purpose is to facilitate FAOSTAT data use in global economic and multisector dynamic models while ensuring transparency, traceability, and reproducibility. Here, we provide an overview of the development of gcamfaostat (v1.0) and demonstrate its capabilities in generating and maintaining agroeconomic data required for the Global Change Analysis Model (GCAM). Our initiative seeks to enhance the quality and accessibility of data for the global agroeconomic modeling community, with the aim of fostering more robust and harmonized outcomes in a collaborative, efficient, and open-source framework. One of the important features of the package is the possibility to construct the FAO Food Balance Sheets at the disaggregated commodity level (with over 500 commodities), which provides a comprehensive and detailed data input for a variety of analytical and modeling applications. The processed data and visualizations offered by gcamfaostat can also be valuable to a broader audience interested in gaining insights into the intricacies of global agriculture.

97 MATHEMATICS AND COMPUTING↗

xCDAT: A Python Package for Simple and Robust Analysis of Climate Data

xCDAT (Xarray Climate Data Analysis Tools) is an open-source Python package that extends Xarray (Hoyer & Hamman, 2017) for climate data analysis on structured grids. xCDAT streamlines analysis of climate data by exposing common climate analysis operations through a set of straightforward APIs. Some of xCDAT’s key features include spatial averaging, temporal averaging, and regridding. These features are inspired by the Community Data Analysis Tools (CDAT) library (Dean N. Williams et al., 2009) (D. N. Williams, 2014) (Doutriaux et al., 2019) and leverage powerful packages in the Xarray ecosystem including xESMF (Zhuang et al., 2023), xgcm (Abernathey et al., 2022), and CF xarray (Cherian et al., 2023). To ensure general compatibility across various climate models, xCDAT operates on datasets that are compliant with the Climate and Forecast (CF) metadata conventions (Hassell et al., 2017).

54 ENVIRONMENTAL SCIENCES↗

Mantaray: A Rust Package for Ray Tracing Ocean Surface Gravity Waves

Ocean surface gravity waves are an important component of air-sea interaction, influencing energy, momentum, and gas exchanges across the ocean-atmosphere interface. In specific applications such as refraction by ocean currents or bathymetry, ray tracing provides a computationally efficient way to gain insight into wave propagation. In this paper, we introduce Mantaray, an open-source software package implemented in Rust, with a Python interface, that solves the ray equations for ocean surface gravity waves. Mantaray is designed for performance, robustness, and ease of use. The package is modular to facilitate further development and can currently be applied to both idealized and realistic wave propagation problems (Fig. 1).

16 TIDAL AND WAVE POWER↗

Model Package Report: Central Plateau Vadose Zone Models

This model package report describes concisely the modeling objectives, conceptualization, implementation, uncertainty and sensitivity, configuration control, limitations, data needs, and recommendations for improvement of the Central Plateau Vadose Zone Models. This collection of models is developed to meet the vadose zone simulation needs of the Hanford Site Composite Analysis (CA), the Hanford Site Cumulative Impact Evaluation (CIE), and are expected to find other applications in Hanford Site remedial cleanup decision-making processes. This model package report describes and documents the development of the models themselves to fulfill technical approaches defined for the CA and the CIE. This report does not document any specific calculation using these models: instead, applications of individual vadose models to perform specific calculations will be documented in environmental calculation files, including inputs and results, as appropriate. Configuration management for the Central Plateau Vadose Zone Models is managed through assignment of unique sequential numerical version numbers and archival of the models in the Environmental Modeling Management Archive.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

ARM Data-Oriented Metrics and Diagnostics Package for Climate Model Evaluation

A Python-based metrics and diagnostics package is currently being developed by the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility Infrastructure Team at Lawrence Livermore National Laboratory to facilitate the use of long-term, high-frequency measurements from ARM in evaluating the regional climate simulation of clouds, radiation, and precipitation. This metrics and diagnostics package computes climatological means of targeted climate model simulation and generates tables and plots for comparing the model simulation with ARM observational data.

54 ENVIRONMENTAL SCIENCES↗

The Polar System Analysis Package (Ver. 1 Specifications)

The Polar System Analysis Package (POLeSTAr) is a modern data fusion tool being designed to benchmark,evaluate and compare the polar physics and biogeochemistry of Earth System Models (ESMs). It is being written in Python to make use of libraries including Xarray, Matplotlib, SciPy, NumPy and PyTorch within algorithms developed specifically for polar system modeling. Initial POLeSTAr algorithms will be adapted from the MATLAB Ridgepack package that was designed to analyze the Model for Prediction Across Scales (MPAS) sea ice component of the Energy Exascale Earth System Model (E3SM) and sea ice model CICE within the Community Earth System Model (CESM).

97 MATHEMATICS AND COMPUTING↗

Physics of the Serrano Sn Transport Package

Serrano is a software package for simulating photon transport in moving material. It presently supports 1-D, unstructured 2-D for a wide variety of element types, and 3-D for tetrahedra and hexahedra. The package is designed to be a component of larger codes, such as radiation hydrodynamics codes. Only the radiation transport equations are solved by Serrano itself.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Initial Temperature Testing of Advanced Manufactured Melt Wire Package

As a part of the In-Pile Instrumentation Program, The Idaho National Laboratory (INL) has recently established in-house capabilities to fabricate and test new advanced manufactured sensors for measuring the peak irradiation temperature inside a nuclear test reactor. Although nuclear test reactors can use standard methods of real-time temperature monitoring, such as thermocouples, the complexity of feedthroughs and attachment complications to collect real-time measurements greatly increases the cost of the experiment. Passive monitoring techniques may be utilized that exploit the melting point of well characterized material (standard melt wires), however, the limited space available for instrumentation during experiments is also a challenge. To accommodate the challenge, INL has expanded its temperature detection instrumentation capabilities paired with the advancement of in-house advanced manufacturing options to include printed melt wires for peak irradiation temperature measurement. The advanced manufactured melt wire package can determine peak temperatures in experiments that can fit the challenging space available during irradiation. Recent results and knowledge from this ongoing work have made it possible to develop unique temperature sensors that can accomplish user specific temperature ranges inside the harsh environments experienced during radiation testing. This report summarizes the initial temperature testing using fabricated melt wires with two different melting temperatures, silver (melting temperature of ~960 °C) and solder (melting temperature of ~160 °C), that were initially tested for their relative melting points using non-standard method of furnace and hot plate testing under normal air conditions. Future work will include more controlled way of testing printed melt wires under inert gas with multiple temperature measurements followed by comparison of standard melt wire package performance for baseline characterization.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Evaluation of Low Cost Infrasound Sensor Packages

Sandia National Laboratories has tested and evaluated the performance of the following five models of low-cost infrasound sensors and sensor packages: Camas microphone, Gem Infrasound Logger, InfraBSU sensor, Raspberry Boom, and the Samsung S10 smartphone utilizing the Redvox app. The purpose of this infrasound sensor evaluation is to measure the performance characteristics in such areas as power consumption, sensitivity, self-noise, dynamic range, response, passband, linearity, sensitivity variation due to changes in static pressure and temperature, and sensitivity to vertical acceleration. The infrasound monitoring community has leveraged such sensors and integrated packages in novel ways; better understanding the performance of these units serves the geophysical monitoring community.

42 ENGINEERING↗

Review of Software Packages for Local Intense Precipitation Flood Modeling

This report documents the review of the hydrologic and hydraulic modeling approaches used to estimate local intense precipitation (LIP) flooding and their implementation in readily available simulation software packages. The review focused on a few representative simulation software packages because of the similarity of their underlying mathematical bases and the rainfall-runoff and hydraulic processes included. Their availability for use in estimating LIP flood hazards and for U.S. Nuclear Regulatory Commission staff review of these estimates at the nuclear power plant (NPP) site scale were also considered.

54 ENVIRONMENTAL SCIENCES↗