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At least 415 records · Page 23

All sources NASA NTRS DOE OSTI

DOE OSTI2025

Complex water networks visualized by cryogenic electron microscopy of RNA

The stability and function of biomolecules are directly influenced by their myriad interactions with water. Here we investigated water through cryogenic electron microscopy (cryo-EM) on a highly solvated molecule: the Tetrahymena ribozyme. By using segmentation-guided water and ion modelling (SWIM), an approach combining resolvability and chemical parameters, we automatically modelled and cross-validated water molecules and Mg 2+ ions in the ribozyme core, revealing the extensive involvement of water in mediating RNA non-canonical interactions. Unexpectedly, in regions where SWIM does not model ordered water, we observed highly similar densities in both cryo-EM maps. In many of these regions, the cryo-EM densities superimpose with complex water networks predicted by molecular dynamics, supporting their assignment as water and suggesting a biophysical explanation for their elusiveness to conventional atomic coordinate modelling. Our study demonstrates an approach to unveil both rigid and flexible waters that surround biomolecules through cryo-EM map densities, statistical and chemical metrics, and molecular dynamics simulations.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

SPANet: Generalized permutationless set assignment for particle physics using symmetry preserving attention

The creation of unstable heavy particles at the Large Hadron Collider is the most direct way to address some of the deepest open questions in physics. Collisions typically produce variable-size sets of observed particles which have inherent ambiguities complicating the assignment of observed particles to the decay products of the heavy particles. Current strategies for tackling these challenges in the physics community ignore the physical symmetries of the decay products and consider all possible assignment permutations and do not scale to complex configurations. Attention based deep learning methods for sequence modelling have achieved state-of-the-art performance in natural language processing, but they lack built-in mechanisms to deal with the unique symmetries found in physical set-assignment problems. We introduce a novel method for constructing symmetry-preserving attention networks which reflect the problem's natural invariances to efficiently find assignments without evaluating all permutations. This general approach is applicable to arbitrarily complex configurations and significantly outperforms current methods, improving reconstruction efficiency between 19% - 35% on typical benchmark problems while decreasing inference time by two to five orders of magnitude on the most complex events, making many important and previously intractable cases tractable. A full code repository containing a general library, the specific configuration used, and a complete dataset release, are available at https://github.com/Alexanders101/SPANet

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

NASA NTRS2010

An Optimization Model for Scheduling Problems with Two-Dimensional Spatial Resource Constraint

Traditional scheduling problems involve determining temporal assignments for a set of jobs in order to optimize some objective. Some scheduling problems also require the use of limited resources, which adds another dimension of complexity. In this paper we introduce a spatial resource-constrained scheduling problem that can arise in assembly, warehousing, cross-docking, inventory management, and other areas of logistics and supply chain management. This scheduling problem involves a twodimensional rectangular area as a limited resource. Each job, in addition to having temporal requirements, has a width and a height and utilizes a certain amount of space inside the area. We propose an optimization model for scheduling the jobs while respecting all temporal and spatial constraints.

Garcia, Christopher↗

NASA NTRS2017

Sensitivity Analysis and Uncertainty Quantification of a Mars Ascent Vehicle Concept

The design of a conceptual Mars ascent vehicle is a challenging problem. In order to aid the vehicle and mission concept design it is important to understand the driving design parameters and the expected performance in the presence of model errors and uncertainties. An existing six degree of freedom simulation model is analyzed on a statistical basis using the methods available in the Design Analysis Kit for Optimization and Terascale Applications toolkit. The methods utilized include conventional Monte Carlo techniques, metamodeling via polynomial chaos expansions, and global variance-based sensitivity analyses. Two additional analysis methods referred to as “Monte Carlo filtering” and ”Classification trees” are used to determine which uncertain parameters are driving the performance of the vehicle. Monte Carlo filtering provides a methodology to determine which parameters cause qualitatively different behavior while the classification trees use heuristics to partition the input space and assign probabilities to each partition. These methods serve as qualitative descriptors of model sensitivity while variance-based global sensitivity analysis seeks a quantitative mapping from total output variance to the variance of individual inputs. Application of these techniques to several outputs of a Mars ascent vehicle concept simulation indicates that only a select few input factors dominate their variance.

Noyes, Connor↗

NASA NTRS1992

Static assignment of complex stochastic tasks using stochastic majorization

We consider the problem of statically assigning many tasks to a (smaller) system of homogeneous processors, where a task's structure is modeled as a branching process, and all tasks are assumed to have identical behavior. We show how the theory of majorization can be used to obtain a partial order among possible task assignments. Our results show that if the vector of numbers of tasks assigned to each processor under one mapping is majorized by that of another mapping, then the former mapping is better than the latter with respect to a large number of objective functions. In particular, we show how measurements of finishing time, resource utilization, and reliability are all captured by the theory. We also show how the theory may be applied to the problem of partitioning a pool of processors for distribution among parallelizable tasks.

Nicol, David↗

DOE OSTI2020

Predictive Modeling and Diagnostic Monitoring of Extreme Science Workflows (Final Report)

This proposal addresses a critical issue of performance prediction identified in the report from the ASCR \Computational Modeling of Big Networks (COMBINE)" workshop: "end-to-end performance is not predictable due to a variety of factors. Even when some performance forecasts or predictions can be made, they often cannot explain the reasons why some predictions fail." We will develop new analytical models to predict the end-to-end performance of scientific workflows on DOE computing infrastructures, and use simulations and experimentation to validate and refine these models, as well as to pinpoint the sources of model inaccuracy. We will also use these models to help diagnose application and infrastructure problems, and to adapt the system based on this diagnosis. This section provides background in the areas relevant to the proposed work. RPI’s specific tasks within the Panorama project are as follows: (1) Develop Aspen-Simulation interface for Workflow Model Driven Simulation. (2) Validate manual performance models of two target workflow scenarios with empirical measurement and simulation. (3) Extend ROSS-Aspen API to simulate workflow descriptions when required. (4) Validate Aspen performance models of two target workflow scenarios with automatic performance model empirical measurement and simulation. (5) Design and implement final system to automatically generate Aspen performance models from workflow descriptions (including methods to compensate for limitations of Aspen analytical models). (6) Validate improved Aspen performance models with target workflow on production infrastructure. To date, all the project milestones assigned to us where reached within the best of our abilities over the course of the project performance period. Below describes the key outcome from our collaborative research in a system named, Durango .

97 MATHEMATICS AND COMPUTING↗

NASA NTRS1992

Eigenstructure assignment approach for structural damage detection

In this work, a methodology for incorporating measured modal data into an existing refined finite element model is examined with the objective of detecting and locating structural damage. The algorithm is based on the partial inverse problem, in that only partial spectral information is required. The technique utilizes a symmetric eigenstructure assignment algorithm to perform the partial spectral assignment. Algorithms to enhance mode shape assignability and to preserve sparsity in the damaged FEM are developed. The sparsity preservation is of particular importance when considering damage detection in trusslike structures. Several examples are presented to highlight the key points made within the paper.

Zimmerman, David C.↗

NASA NTRS1991

Hybrid state-space self-tuning control using dual-rate sampling

This paper presents a hybrid state-space self-tuning control scheme using dual-rate sampling for suboptimal digital adaptive control of linear time-invariant continuous-time multivariable stochastic systems with unknown parameters. An equivalent fast-rate discrete-time state-space innovation model (with estimated states) of the continuous-time system is constructed by using the estimated system parameters and Kalman gain. To utilize the existing optimal regional-pole assignment method developed in the continuous-time domain, the constructed fast-rate discrete-time model is converted into an equivalent continuous-time model for the development of a state-feedback optimal control law with pole placement in a specific region. The developed analog optimal control law is then converted into an equivalent pseudo-slow-rate digital control law via the proposed digital redesign technique, which can be realized via slow-rate digital electronics. The proposed method enables the development of a digitally implementable advanced control algorithm for digital adaptive control of continuous-time multivariable stochastic systems which may be unstable and/or have nonminimum phase.

Shieh, Leang S.↗

NASA NTRS1977

Prediction of pilot opinion ratings using an optimal pilot model

A brief review of some of the more pertinent applications of analytical pilot models to the prediction of aircraft handling qualities is undertaken. The relative ease with which multiloop piloting tasks can be modeled via the optimal control formulation makes the use of optimal pilot models particularly attractive for handling qualities research. To this end, a rating hypothesis is introduced which relates the numerical pilot opinion rating assigned to a particular vehicle and task to the numerical value of the index of performance resulting from an optimal pilot modeling procedure as applied to that vehicle and task. This hypothesis is tested using data from piloted simulations and is shown to be reasonable. An example concerning a helicopter landing approach is introduced to outline the predictive capability of the rating hypothesis in multiaxis piloting tasks.

Hess, R. A.↗

NASA NTRS2010

Charge-Spot Model for Electrostatic Forces in Simulation of Fine Particulates

The charge-spot technique for modeling the static electric forces acting between charged fine particles entails treating electric charges on individual particles as small sets of discrete point charges, located near their surfaces. This is in contrast to existing models, which assume a single charge per particle. The charge-spot technique more accurately describes the forces, torques, and moments that act on triboelectrically charged particles, especially image-charge forces acting near conducting surfaces. The discrete element method (DEM) simulation uses a truncation range to limit the number of near-neighbor charge spots via a shifted and truncated potential Coulomb interaction. The model can be readily adapted to account for induced dipoles in uncharged particles (and thus dielectrophoretic forces) by allowing two charge spots of opposite signs to be created in response to an external electric field. To account for virtual overlap during contacts, the model can be set to automatically scale down the effective charge in proportion to the amount of virtual overlap of the charge spots. This can be accomplished by mimicking the behavior of two real overlapping spherical charge clouds, or with other approximate forms. The charge-spot method much more closely resembles real non-uniform surface charge distributions that result from tribocharging than simpler approaches, which just assign a single total charge to a particle. With the charge-spot model, a single particle may have a zero net charge, but still have both positive and negative charge spots, which could produce substantial forces on the particle when it is close to other charges, when it is in an external electric field, or when near a conducting surface. Since the charge-spot model can contain any number of charges per particle, can be used with only one or two charge spots per particle for simulating charging from solar wind bombardment, or with several charge spots for simulating triboelectric charging. Adhesive image-charge forces acting on charged particles touching conducting surfaces can be up to 50 times stronger if the charge is located in discrete spots on the particle surface instead of being distributed uniformly over the surface of the particle, as is assumed by most other models. Besides being useful in modeling particulates in space and distant objects, this modeling technique is useful for electrophotography (used in copiers) and in simulating the effects of static charge in the pulmonary delivery of fine dry powders.

Walton, Otis R.↗

DOE OSTI2020

SRS Composite Analysis Monitoring Plan (FY2019 Model Validation)

Using a projected end-state date of 2065 (SRNS 2015b), the Savannah River Site (SRS) Composite Analysis (CA) modeling for each facility and waste site began on the inventory year assigned to it so that source depletion and radionuclide transport out of the system could be appropriately captured. Some SRS waste sites that have already achieved their end states (i.e. end-state inventories and end-state configuration) are currently contributing to the potential off-site public dose through source release, groundwater transport, discharge to on-site surface streams, and stream transport to the CA point of assessments (POAs). The inventory year assigned to these waste sites is 2002 or before. This means that SRS CA results from 2002 and beyond are a reasonable representation for these waste sites that have already achieved their end states and are currently contributing to the potential off-site public dose. The SRS Annual Environmental Report (AER) monitoring can differentiate and separate liquid pathway data allowing the data representing only waste sites at their end state to be produced. Because the SRS CA has projected reasonable end-state impacts from 2002 and beyond, and the AER monitoring can differentiate and separate operating and end-state contributions to annual liquid pathway release, an opportunity exists to use the AER monitoring data to validate the SRS CA model. The CA model validation program uses a graded and systematic approach for taking corrective action, starting with an SRS established administrative dose limit of 15 mrem/yr, below which no action is required. Based on the location of the 2010 SRS CA POAs, the only potential exposure pathway for the public is through surface water. The completion of the FY2019 CA model validation indicates that the SRS CA projected dose, while generally conservative, provides a reasonable representation of the maximum annual doses. These doses are well below the administrative limit; therefore, no additional action is required.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2022

Model Validation for the FY2021 SRS Composite Analysis Monitoring Plan

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

NASA NTRS2007

Bootstrap data methodology for sequential hybrid model building

A method for modeling engine operation comprising the steps of: 1. collecting a first plurality of sensory data, 2. partitioning a flight envelope into a plurality of sub-regions, 3. assigning the first plurality of sensory data into the plurality of sub-regions, 4. generating an empirical model of at least one of the plurality of sub-regions, 5. generating a statistical summary model for at least one of the plurality of sub-regions, 6. collecting an additional plurality of sensory data, 7. partitioning the second plurality of sensory data into the plurality of sub-regions, 8. generating a plurality of pseudo-data using the empirical model, and 9. concatenating the plurality of pseudo-data and the additional plurality of sensory data to generate an updated empirical model and an updated statistical summary model for at least one of the plurality of sub-regions.

Volponi, Allan J.↗

NASA NTRS2011

Symbolically Modeling Concurrent MCAPI Executions

Improper use of Inter-Process Communication (IPC) within concurrent systems often creates data races which can lead to bugs that are challenging to discover. Techniques that use Satisfiability Modulo Theories (SMT) problems to symbolically model possible executions of concurrent software have recently been proposed for use in the formal verification of software. In this work we describe a new technique for modeling executions of concurrent software that use a message passing API called MCAPI. Our technique uses an execution trace to create an SMT problem that symbolically models all possible concurrent executions and follows the same sequence of conditional branch outcomes as the provided execution trace. We check if there exists a satisfying assignment to the SMT problem with respect to specific safety properties. If such an assignment exists, it provides the conditions that lead to the violation of the property. We show how our method models behaviors of MCAPI applications that are ignored in previously published techniques.

Fischer, Topher↗

DOE OSTI2026

Joint Optimization of Multimodal Transit Frequency and Shared Autonomous Vehicle Fleet Size with Hybrid Metaheuristic and Nonlinear Programming

Shared autonomous vehicles (SAVs) bring competition to traditional transit services but redesigning multimodal transit network can utilize SAVs as feeders to enhance service efficiency and coverage. This paper presents an optimization framework for the joint multimodal transit frequency and SAV fleet size problem, a variant of the transit network frequency setting problem. The objective is to maximize total transit ridership (including SAV-fed trips and subtracting boarding rejections) across multiple time periods under budget constraints, considering endogenous mode choice (transit, point-to-point SAVs, driving) and route selection, while allowing for strategic route removal by setting frequencies to zero. Due to the problem’s non-linear, non-convex nature and the computational challenges of large-scale networks, we develop a hybrid solution approach that combines a metaheuristic approach (particle swarm optimization) with nonlinear programming for local solution refinement. To ensure computational tractability, the framework integrates analytical approximation models for SAV waiting times based on fleet utilization, multimodal network assignment for route choice, and multinomial logit mode choice behavior, bypassing the need for computationally intensive simulations within the main optimization loop. Applied to the Chicago metropolitan area’s multimodal network, our method illustrates a 33.3% increase in transit ridership through optimized transit route frequencies and SAV integration, particularly enhancing off-peak service accessibility and strategically reallocating resources.

Ng, Max↗

DOE OSTI2022

Developing a heterogeneous ensemble learning framework to evaluate Alkali-silica reaction damage in concrete using acoustic emission signals

The monitoring and evaluation of Alkali-silica reaction (ASR) damage in concrete structures are required to ensure the serviceability and integrity of concrete infrastructures such as bridges and dams. The innovation of this paper lies in the development of an automatic ASR monitoring and evaluation approach by leveraging acoustic emission (AE) and a heterogeneous ensemble learning framework. Here, in this paper, ASR was monitored by AE sensors attached to a concrete specimen, which was placed in a chamber with high humidity and temperature. The recorded AE signals were filtered and divided by four ASR phases according to signal strength, crack width and expansion strain. A heterogeneous ensemble network including convolutional neural networks (CNN) and random forest models was employed to learn different features from AE signals and classify the AE signals into their corresponding phases. The results suggest that the proposed model has a high performance and classifies the signals into the assigned phases with high accuracy.

42 ENGINEERING↗

DOE OSTI2023

Parton labeling without matching: unveiling emergent labelling capabilities in regression models

Parton labeling methods are widely used when reconstructing collider events with top quarks or other massive particles. State-of-the-art techniques are based on machine learning and require training data with events that have been matched using simulations with truth information. In nature, there is no unique matching between partons and final state objects due to the properties of the strong force and due to acceptance effects. We propose a new approach to parton labeling that circumvents these challenges by recycling regression models. The final state objects that are most relevant for a regression model to predict the properties of a particular top quark are assigned to said parent particle without having any parton-matched training data. This approach is demonstrated using simulated events with top quarks and outperforms the widely used $χ$ 2 method.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1974

Three models for scheduling space shuttle missions and resources

The scheduling of space shuttle missions within specified window and resource constraints are reported. Models are described for selecting qualified resource units to the mission assignments.

Rubin, J.↗