Fast Determination of the Lignin Monomer Compositions of Genetic Variants of Poplar via Fast Pyrolysis/Atmospheric Pressure Chemical Ionization Mass Spectrometry
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Biochemistry & Molecular Biology↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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A novel network-based approach to determining measurement representation error for model evaluation of aerosol microphysical properties
Atmospheric aerosol size and abundance influence radiative effects and climate change. To date, efforts to constrain global climate models’ radiative forcing with in situ aerosol observations have been hamstrung by uncertainty. One source of error, the regional “representation error,” arises when accurate but sparse single-point measurements of atmospheric aerosol distributions are compared with a model value, assuming that the single-point measurement is representative of the model domain. The Portable Optical Particle Spectrometer network in the Southern Great Plains (POPSnet-SGP) campaign has demonstrated that a network of nearly autonomous aerosol instruments operating at ambient temperature and relative humidity (with low measurement error) may be used to quantify measurement representation error and investigate the factors introducing heterogeneity in aerosol distributions across a rural, continental background region. Measurements were made using Portable Optical Particle Spectrometer (POPS) instruments at several sites for five months across the Department of Energy’s Aerosol Radiation Measurement Southern Great Plains (ARM-SGP) User Facility in the central USA. Measurement representation error decreased with longer averaging periods (20-40 % between 1 sec and 1 day), varied between sites by 10 – 20 % for aerosol concentration 140 – 2500 nm in diameter (N_140), and was higher for aerosols > 400 nm in diameter (N_400). Our measurements also show the influence of local meteorology on aerosol surface area (A_140) and size distributions: A_140 is positively correlated with wind speed and relative humidity, negatively correlated with precipitation, and lower given westerly winds. Based on this study, we conclude that the POPSnet approach provides considerably more insight into the spatial variability in the aerosol population that can be used to constrain climate models than would be available from similar networks of PM 2.5 monitors.
54 ENVIRONMENTAL SCIENCES↗
Exploiting SMILEs and the CMIP5 Archive to Understand Arctic Climate Change Seasonality and Uncertainty
Arctic Amplification (AA) exhibits a distinct seasonal dependence; it is weakest in boreal summer and strongest in winter. Here, we analyze simulations from single-model initial-condition large ensembles and Coupled Model Intercomparison Project Phase 5 to decipher the seasonal evolution of Arctic climate change. Models agree that the annual maximum AA shifts from autumn into winter over the 21st century, accompanied by similar shifts in sea-ice loss and surface turbulent heat fluxes, whereas the maximum precipitation shifts only into late autumn. However, the exact seasonal timing and magnitude of these shifts are highly uncertain. Decomposing the uncertainty into model structural differences, emission scenarios, and internal variability reveals that model differences dominate the total uncertainty, which also undergo autumn-to-winter shifts. We also find that the scenario uncertainty is unimportant for projections of AA. These results highlight that understanding model differences is critical to reducing uncertainty in projected Arctic climate change.
54 ENVIRONMENTAL SCIENCES↗
Turbulence Structures in the Very Stable Boundary Layer Under the Influence of Wind Profile Distortion
Abstract In very stable boundary layers (VSBL), a “cocktail” of submeso motions routinely result in elevated mean wind speed maxima above the ground, acting as a new source of turbulence generation. This new source of turbulent kinetic energy enhances turbulent mixing and causes mean wind profile distortion (WPD). As a results, this transient distortion in the wind profile adjusts the classical log‐law. Addressing how WPD‐induced turbulence regulates flow structures, turbulent fluxes, and transitions in stability regimes across layers remains a challenge. Eddy covariance data measured at four levels on a 62‐m tower are employed to address these questions. It is shown that the WPD initiates large turbulent eddies that penetrate downward, leading to enhanced vertical mixing and comparable turbulent transport efficiencies across layers. As a consequence, turbulence intensity and fluxes are increased. As the WPD is intensified, turbulent fluxes and turbulent flux transport caused by large eddies are also enhanced, leading to a transition from very stable to weakly stable regimes. Due to the influence of WPD‐induced large eddies, the large‐eddy turbulent Prandtl number does not deviate appreciably from unity and the partitioning between turbulent kinetic and potential energies is linearly related to the gradient Richardson number.
Meteorology & Atmospheric Sciences↗
Current and Future Global Lake Methane Emissions: A Process‐Based Modeling Analysis
Abstract Freshwater ecosystem contributions to the global methane budget remains the most uncertain among natural sources. With warming and accompanying carbon release from thawed permafrost and thermokarst lake expansion, the increase of methane emissions could be large. However, the impact and relative importance of various factors related to warming remain uncertain. Based on diverse lake characteristics incorporated in modeling and observational data, we calibrate and verify a lake biogeochemistry model. The model is then applied to estimate global lake methane emissions and examine the impacts of temperature increase for the first and the last decades of the 21st century under different climate scenarios. We find that current emissions are 24.0 ± 8.4 Tg CH 4 yr −1 from lakes larger than 0.1 km 2 , accounting for 11% of the global total natural source as estimated based on atmospheric inversion. Future projections under the RCP8.5 scenario suggest a 58%–86% growth in emissions from lakes. Our model sensitivity analysis indicates that additional carbon substrates from thawing permafrost may enhance methane production under warming in the Arctic. Warming enhanced methane oxidation in lake water can be an effective sink to reduce the net release from global lakes.
54 ENVIRONMENTAL SCIENCES↗
The Role of In-Cloud Wet Removal in Simulating Aerosol Vertical Profiles and Cloud Radiative Forcing
Among the physical processes controlling aerosol vertical profiles, in-cloud wet removal is of utmost importance while its representation in global climate models (GCMs) is crude. In this study, we implement into the Community Atmosphere Model version 6 (CAM6) a physically based aerosol wet removal parameterization scheme that explicitly treats aerosol activation, removal and resuspension. Evaluation against in-situ observations shows that the default scheme substantially overestimates the upper tropospheric black carbon (BC) and sea salt mass. Our physically based scheme reduces BC and sea salt mass by a factor of 10 and 1,000, respectively, in better agreement with observations. Also, the new scheme slightly increases number of aerosol particles between 12 nm and 4.8 μm in diameter, thereby mitigating the aerosol number underestimation in the default scheme. Our new scheme reduces the overestimation of coarse-mode aerosol (0.5–4.8 μm) number. Overall, the aerosol property changes (mass decrease and number increase) reduce the cloud condensation nuclei (CCN) concentration at low supersaturation (i.e., 0.02% and 0.1%), and increase CCN at high supersaturations (i.e., 0.5% and 1%). Consequently, the global annual mean cloud liquid water path increases by 1.89 g m -2 and the ice water path increases by 0.51 g m -2 . The global annual mean shortwave, longwave, and net cloud radiative forcing change by -1.06, 0.57, and -0.48 W m -2 , respectively. Further improvement is needed to reflect the real physics that the removal efficiencies for aerosol mass and number are disproportionate and to advect cloud-borne (activated) aerosols for a complete aerosol lifecycle.
54 ENVIRONMENTAL SCIENCES↗
The Potential of Hydrogeodesy to Address Water-Related and Sustainability Challenges
Increasing climatic and human pressures are changing the world's water resources and hydrological processes at unprecedented rates. Understanding these changes requires comprehensive monitoring of water resources. Hydrogeodesy, the science that measures the Earth's solid and aquatic surfaces, gravity field, and their changes over time, delivers a range of novel monitoring tools that are complementary to traditional hydrological methods. It encompasses geodetic technologies such as Altimetry, Interferometric Synthetic Aperture Radar (InSAR), Gravimetry, and Global Navigation Satellite Systems (GNSS). Beyond quantifying these changes, there is a need to understand how hydrogeodesy can contribute to more ambitious goals dealing with water-related and sustainability sciences. Addressing this need, we combine a meta-analysis of over 3,000 articles to chart the range, trends, and applications of satellite-based hydrogeodesy with an expert elicitation that systematically assesses the potential of hydrogeodesy. We find a growing body of literature relating to the advancements in hydrogeodetic methods, their accuracy and precision, and their inclusion in hydrological modeling, with a considerably smaller portion related to understanding hydrological processes, water management, and sustainability sciences. The meta-analysis also shows that while lakes, groundwater and glaciers are commonly monitored by these technologies, wetlands or permafrost could benefit from a wider range of applications. In turn, the expert elicitation envisages the potential of hydrogeodesy to help solve the 23 Unsolved Questions of the International Association of Hydrological Sciences and advance knowledge as guidance toward a safe operating space for humanity. It also highlights how this potential can be maximized by combining hydrogeodetic technologies simultaneously, exploiting artificial intelligence, and accurately integrating other Earth science disciplines. Finally, we call for a coordinated way forward to include hydrogeodesy in tertiary education and broaden its application to water-related and sustainability sciences in order to exploit its full potential.
54 ENVIRONMENTAL SCIENCES↗
Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
Abstract Although the phylum Chloroflexota is ubiquitous, its biology and evolution are poorly understood due to limited cultivability. Here, we isolated two motile, thermophilic bacteria from hot spring sediments belonging to the genus Tepidiforma and class Dehalococcoidia within the phylum Chloroflexota. A combination of cryo-electron tomography, exometabolomics, and cultivation experiments using stable isotopes of carbon revealed three unusual traits: flagellar motility, a peptidoglycan-containing cell envelope, and heterotrophic activity on aromatics and plant-associated compounds. Outside of this genus, flagellar motility has not been observed in Chloroflexota, and peptidoglycan-containing cell envelopes have not been described in Dehalococcoidia. Although these traits are unusual among cultivated Chloroflexota and Dehalococcoidia, ancestral character state reconstructions showed flagellar motility and peptidoglycan-containing cell envelopes were ancestral within the Dehalococcoidia, and subsequently lost prior to a major adaptive radiation of Dehalococcoidia into marine environments. However, despite the predominantly vertical evolutionary histories of flagellar motility and peptidoglycan biosynthesis, the evolution of enzymes for degradation of aromatics and plant-associated compounds was predominantly horizontal and complex. Together, the presence of these unusual traits in Dehalococcoidia and their evolutionary histories raise new questions about the timing and selective forces driving their successful niche expansion into global oceans.
59 BASIC BIOLOGICAL SCIENCES↗
Switchable encapsulation of polysulfides in the transition between sulfur and lithium sulfide
Encapsulation strategies are widely used for alleviating dissolution and diffusion of polysulfides, but they experience nonrecoverable structural failure arising from the repetitive severe volume change during lithium-sulfur battery cycling. Here we report a methodology to construct an electrochemically recoverable protective layer of polysulfides using an electrolyte additive. The additive nitrogen-doped carbon dots maintain their “dissolved” status in the electrolyte at the full charge state, and some of them function as active sites for lithium sulfide growth at the full discharge state. When polysulfides are present amid the transition between sulfur and lithium sulfide, nitrogen-doped carbon dots become highly reactive with polysulfides to form a solid and recoverable polysulfide-encapsulating layer. This design skilfully avoids structural failure and efficiently suppresses polysulfide shuttling. The sulfur cathode delivers a high reversible capacity of 891 mAh g -1 at 0.5 C with 99.5% coulombic efficiency and cycling stability up to 1000 cycles at 2 C.
25 ENERGY STORAGE↗
Universal mechanical exfoliation of large-area 2D crystals
Two-dimensional materials provide extraordinary opportunities for exploring phenomena arising in atomically thin crystals. Beginning with the first isolation of graphene, mechanical exfoliation has been a key to provide high-quality two-dimensional materials, but despite improvements it is still limited in yield, lateral size and contamination. Here we introduce a contamination-free, one-step and universal Au-assisted mechanical exfoliation method and demonstrate its effectiveness by isolating 40 types of single-crystalline monolayers, including elemental two-dimensional crystals, metal-dichalcogenides, magnets and superconductors. Most of them are of millimeter-size and high-quality, as shown by transfer-free measurements of electron microscopy, photo spectroscopies and electrical transport. Large suspended two-dimensional crystals and heterojunctions were also prepared with high-yield. Enhanced adhesion between the crystals and the substrates enables such efficient exfoliation, for which we identify a gold-assisted exfoliation method that underpins a universal route for producing large-area monolayers and thus supports studies of fundamental properties and potential application of two-dimensional materials.
36 MATERIALS SCIENCE↗
Selective inhibition of human translation termination by a drug-like compound
Methods to directly inhibit gene expression using small molecules hold promise for the development of new therapeutics targeting proteins that have evaded previous attempts at drug discovery. Among these, small molecules including the drug-like compound PF-06446846 (PF846) selectively inhibit the synthesis of specific proteins, by stalling translation elongation. These molecules also inhibit translation termination by an unknown mechanism. Using cryo-electron microscopy (cryo-EM) and biochemical approaches, we show that PF846 inhibits translation termination by arresting the nascent chain (NC) in the ribosome exit tunnel. The arrested NC adopts a compact α-helical conformation that induces 28 S rRNA nucleotide rearrangements that suppress the peptidyl transferase center (PTC) catalytic activity stimulated by eukaryotic release factor 1 (eRF1). These data support a mechanism of action for a small molecule targeting translation that suppresses peptidyl-tRNA hydrolysis promoted by eRF1, revealing principles of eukaryotic translation termination and laying the foundation for new therapeutic strategies.
59 BASIC BIOLOGICAL SCIENCES↗
High-speed volumetric two-photon fluorescence imaging of neurovascular dynamics
Abstract Understanding the structure and function of vasculature in the brain requires us to monitor distributed hemodynamics at high spatial and temporal resolution in three-dimensional (3D) volumes in vivo. Currently, a volumetric vasculature imaging method with sub-capillary spatial resolution and blood flow-resolving speed is lacking. Here, using two-photon laser scanning microscopy (TPLSM) with an axially extended Bessel focus, we capture volumetric hemodynamics in the awake mouse brain at a spatiotemporal resolution sufficient for measuring capillary size and blood flow. With Bessel TPLSM, the fluorescence signal of a vessel becomes proportional to its size, which enables convenient intensity-based analysis of vessel dilation and constriction dynamics in large volumes. We observe entrainment of vasodilation and vasoconstriction with pupil diameter and measure 3D blood flow at 99 volumes/second. Demonstrating high-throughput monitoring of hemodynamics in the awake brain, we expect Bessel TPLSM to make broad impacts on neurovasculature research.
59 BASIC BIOLOGICAL SCIENCES↗
Structural basis for CSPG4 as a receptor for TcdB and a therapeutic target in Clostridioides difficile infection
C. difficile is a major cause of antibiotic-associated gastrointestinal infections. Two C. difficile exotoxins (TcdA and TcdB) are major virulence factors associated with these infections, and chondroitin sulfate proteoglycan 4 (CSPG4) is a potential receptor for TcdB, but its pathophysiological relevance and the molecular details that govern recognition remain unknown. Here, we determine the cryo-EM structure of a TcdB–CSPG4 complex, revealing a unique binding site spatially composed of multiple discontinuous regions across TcdB. Mutations that selectively disrupt CSPG4 binding reduce TcdB toxicity in mice, while CSPG4-knockout mice show reduced damage to colonic tissues during C. difficile infections. We further show that bezlotoxumab, the only FDA approved anti-TcdB antibody, blocks CSPG4 binding via an allosteric mechanism, but it displays low neutralizing potency on many TcdB variants from epidemic hypervirulent strains due to sequence variations in its epitopes. In contrast, a CSPG4-mimicking decoy neutralizes major TcdB variants, suggesting a strategy to develop broad-spectrum therapeutics against TcdB.
59 BASIC BIOLOGICAL SCIENCES↗
In-situ anodic precipitation process for highly efficient separation of aluminum alloys
Electrorefining process has been widely used to separate and purify metals, but it is limited by deposition potential of the metal itself. Here we report in-situ anodic precipitation (IAP), a modified electrorefining process, to purify aluminium from contaminants that are more reactive. During IAP, the target metals that are more cathodic than aluminium are oxidized at the anode and forced to precipitate out in a low oxidation state. This strategy is fundamentally based on different solubilities of target metal chlorides in the NaAlCl4 molten salt rather than deposition potential of metals. The results suggest that IAP is able to efficiently and simply separate components of aluminum alloys with fast kinetics and high recovery yields, and it is also a valuable synthetic approach for metal chlorides in low oxidation states.
36 MATERIALS SCIENCE↗
Multi-scale computer-aided design and photo-controlled macromolecular synthesis boosting uranium harvesting from seawater
By integrating multi-scale computational simulation with photo-regulated macromolecular synthesis, this study presents a new paradigm for smart design while customizing polymeric adsorbents for uranium harvesting from seawater. A dissipative particle dynamics (DPD) approach, combined with a molecular dynamics (MD) study, is performed to simulate the conformational dynamics and adsorption process of a model uranium grabber, i.e., PAO m -b-PPEGMA n , suggesting that the maximum adsorption capacity with atomic economy can be achieved with a preferred block ratio of 0.18. The designed polymers are synthesized using the PET-RAFT polymerization in a microfluidic platform, exhibiting a record high adsorption capacity of uranium (11.4 ± 1.2 mg/g) in real seawater within 28 days. This study offers an integrated perspective to quantitatively assess adsorption phenomena of polymers, bridging metal-ligand interactions at the molecular level with their spatial conformations at the mesoscopic level. The established protocol is generally adaptable for target-oriented development of more advanced polymers for broadened applications.
97 MATHEMATICS AND COMPUTING↗
Filming movies of attosecond charge migration in single molecules with high harmonic spectroscopy
Electron migration in molecules is the progenitor of chemical reactions and biological functions after light-matter interaction. Following this ultrafast dynamics, however, has been an enduring endeavor. Here we demonstrate that, by using machine learning algorithm to analyze high-order harmonics generated by two-color laser pulses, we are able to retrieve the complex amplitudes and phases of harmonics of single fixed-in-space molecules. These complex dipoles enable us to construct movies of laser-driven electron migration after tunnel ionization of N 2 and CO 2 molecules at time steps of 50 attoseconds. Moreover, the angular dependence of the migration dynamics is fully resolved. By examining the movies, we observe that electron holes do not just migrate along the laser polarization direction, but may swirl around the atom centers. Our result establishes a general scheme for studying ultrafast electron dynamics in molecules, paving a way for further advance in tracing and controlling photochemical reactions by femtosecond lasers.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Dislocation exhaustion and ultra-hardening of nanograined metals by phase transformation at grain bo
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Wu, Shangshu↗
Manipulating single excess electrons in monolayer transition metal dihalide
Polarons are entities of excess electrons dressed with local response of lattices, whose atomic-scale characterization is essential for understanding the many body physics arising from the electron-lattice entanglement, yet difficult to achieve. Here, using scanning tunneling microscopy and spectroscopy (STM/STS), we show the visualization and manipulation of single polarons in monolayer CoCl 2 , that are grown on HOPG substrate via molecular beam epitaxy. Two types of polarons are identified, both inducing upward local band bending, but exhibiting distinct appearances, lattice occupations and polaronic states. First principles calculations unveil origin of polarons that are stabilized by cooperative electron-electron and electron-phonon interactions. Both types of polarons can be created, moved, erased, and moreover interconverted individually by the STM tip, as driven by tip electric field and inelastic electron tunneling effect. This finding identifies the rich category of polarons in CoCl 2 and their feasibility of precise control unprecedently, which can be generalized to other transition metal halides.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗