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At least 415 records · Page 23

Tree-based solvers for adaptive mesh refinement code $\scriptsize{FLASH}$ – IV. An X-ray radiation scheme to couple discrete and diffuse X-ray emission sources to the thermochemistry of the interstellar medium

X-ray radiation, in particular radiation between 0.1 and 10 keV, is evident from both point-like sources, such as compact objects and T-Tauri young stellar objects, and extended emission from hot, cooling gas, such as in supernova remnants. The X-ray radiation is absorbed by nearby gas, providing a source of both heating and ionization. While protoplanetary chemistry models now often include X-ray emission from the central young stellar object, simulations of star-forming regions have yet to include X-ray emission coupled to the chemo-dynamical evolution of the gas. We present an extension of the $\scriptsize{TREERAY}$ reverse ray trace algorithm implemented in the flash magnetohydrodynamic code which enables the inclusion of X-ray radiation from 0.1 keV < E γ < 100 keV, dubbed $\scriptsize{XRAYTHESPOT}$. $\scriptsize{XRAYTHESPOT}$ allows for the use of an arbitrary number of bins, minimum and maximum energies, and both temperature-independent and temperature-dependent user-defined cross-sections, along with the ability to include both point and extended diffuse emission and is coupled to the thermochemical evolution. We demonstrate the method with several multibin benchmarks testing the radiation transfer solution and coupling to the thermochemistry. Finally, we show two example star formation science cases for this module: X-ray emission from protostellar accretion irradiating an accretion disc and simulations of molecular clouds with active chemistry, radiation pressure, and protostellar radiation feedback from infrared to X-ray radiation.

79 ASTRONOMY AND ASTROPHYSICS↗

Tree-based solvers for adaptive mesh refinement code FLASH – III: a novel scheme for radiation pressure on dust and gas and radiative transfer from diffuse sources

Radiation is an important contributor to the energetics of the interstellar medium, yet its transport is difficult to solve numerically. We present a novel approach towards solving radiative transfer of diffuse sources via backwards ray tracing. Here, we focus on the radiative transfer of infrared radiation and the radiation pressure on dust. The new module, TREERAY/RADPRESSURE, is an extension to the novel radiative transfer method TREERAY implemented in the grid-based Magneto-Hydrodynamics code FLASH. In TREERAY/RADPRESSURE, every cell and every star particle is a source of infrared radiation. We also describe how gas, dust, and radiation are coupled via a chemical network. This allows us to compute the local dust temperature in thermal equilibrium, leading to a significantly improvement over the classical grey approximation. In several tests, we demonstrate that the scheme produces the correct radiative intensities as well as the correct momentum input by radiation pressure. Subsequently, we apply our new scheme to model massive star formation from a collapsing, turbulent core of 150 M ⊙ . We include the effects of both, ionizing and infrared radiation on the dynamics of the core. We find that the newborn massive star prevents fragmentation in its proximity due to radiative heating. Over time, dust and radiation temperature equalize, while the gas temperature can be either warmer due to shock heating or colder due to insufficient dust–gas coupling. Compared to gravity, the effects of radiation pressure are insignificant for the stellar mass on the simulated time-scale in this work.

(ISM:) HII regions↗

Shielding Analysis of a Preclinical Bremsstrahlung X-ray FLASH Radiotherapy System within a Clinical Radiation Therapy Vault

A preclinical radiotherapy system producing FLASH dose rates with 12 MV bremsstrahlung x rays is being developed at Stanford University and SLAC National Accelerator Laboratory. Because of the high expected workload of 6,800 Gy w –1 at the isocenter, an efficient shielding methodology is needed to protect operators and the public while the preclinical system is operated in a radiation therapy vault designed for 6 MV x rays. Here, in this study, an analysis is performed to assess the shielding of the local treatment head and radiation vault using the Monte Carlo code FLUKA and the empirical methodology given in the National Council on Radiation Protection and Measurements Report 151. Two different treatment head shielding designs were created to compare single-layer and multilayer shielding methodologies using high-Z and low-Z materials. The multilayered shielding methodology produced designs with a 17% reduction in neutron fluence leaking from the treatment head compared to the single layered design of the same size, resulting in a decreased effective dose to operators and the public. The conservative assumptions used in the empirical methods can lead to over-shielding when treatment heads use polyethylene or multilayered shielding. High-Z/Low-Z multilayered shielding optimized via Monte Carlo is shown to be effective in the case of treatment head shielding and provide more effective shielding design for external beam radiotherapy systems that use 12 MV bremsstrahlung photons. Modifications to empirical methods used in the assessment of MV radiotherapy systems may be warranted to capture the effects of polyethylene in treatment head shielding.

61 RADIATION PROTECTION AND DOSIMETRY↗

Accelerating Flash-X Simulations with Asynchronous I/O

Most high-fidelity physics simulation codes, such as Flash-X, need to save intermediate results (checkpoint files) to restart or gain insights into the evolution of the simulation. These simulation codes save such intermediate files synchronously, where computation is stalled while the data is written to storage. Depending on the problem size and computational requirements, this file write time can be a substantial portion of the total simulation time. In order to hide the I/O latency of checkpointing, asynchronous I/O methods have been introduced. These methods use background threads for performing I/O while the main threads continue with the simulation. The usage of background threads can compete for resources on the node as well as with communication. In this paper, we evaluate the overheads and the overall benefit of asynchronous I/O in HDF5 to simulations. Results from real-world high-fidelity simulations on the Summit supercomputer show that I/O operation is overlapped with application communication or computation or both, effectively hiding some or all of the I/O latency. Our evaluation shows that while using asynchronous I/O adds overhead to the application, the I/O time reduction is more significant, resulting in overall up to 1.5X performance speedup.

Jain, Rajeev↗

Beam Breakup Simulations for the Scorpius Flash-Radiography Accelerator

Beam breakup (BBU) in linear induction accelerators (LIAs) used for flash radiography is problematic because the high-frequency beam motion can blur the source spot, thereby degrading resolution. Amplification of BBU depends directly on details of cell design and is suppressed in operation by the solenoidal magnetic field focusing on the electron beam. Therefore, much effort has gone into design of the cells and magnetic focusing for the new Scorpius radiography LIA. Here, in this article, we use computer simulations to demonstrate that BBU in Scorpius should be no more than in present radiography LIAs at the Los Alamos National Laboratory.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Phase evolution during conventional and reactive flash sintering of (Mg,Ni,Co,Cu,Zn)O via in situ X-ray diffraction

Reactive flash sintering (RFS) enables the simultaneous synthesis and sintering of ceramics and has been shown to affect the reaction pathway of different materials. Herein, in situ synchrotron X-ray diffraction (XRD) is used to investigate the (Mg,Ni,Co,Cu,Zn)O entropy-stabilized oxide formation during: (i) conventional heating and (ii) RFS under current rate-controlled mode. The same reaction pathway is verified in both instances: the starting rock-salt (RS), spinel (Co 3 O 4 ), tenorite (CuO), and wurtzite (ZnO) phases transform into a single RS phase with a (1 1 1) to (2 0 0) intensity ratio of 0.67, consistent with a random distribution of the cations into the structure. Pt lattice peak shift from the XRD patterns is used as standard to monitor the sample surface temperature, revealing a strong endothermic reaction during the RS single-phase formation (Pt peaks shift toward higher angles while increasing sample temperature/current density). Furthermore, in RFS, the single-phase RS structure is formed in just 60 s at a furnace temperature of 600°C and a current rate of 220 mA mm -2 /min. Therefore, RFS greatly accelerates the synthesis of (Mg,Ni,Co,Cu,Zn)O, however, it does not play a role in the reaction pathway for this material formation.

36 MATERIALS SCIENCE↗

Unveiling the Mechanism of Photodamage to Sphingolipid Molecules via Laser Flash Photolysis and EPR

Abstract Sphingolipids are involved in the maintenance of the skin barrier function and regulate cellular processes of keratinocytes. The work reported here is designed to uncover details of the mechanism of damage to such lipids by UV radiation. Our approach employs laser flash photolysis and electron paramagnetic resonance (EPR) spectrometry to explore the mechanism of the decay reactions, and to determine the associated kinetic parameters. To interpret our experiments, we computed both excitation energies and EPR parameters of radicals formed during photolysis. Employing the spin‐trap EPR method confirmed the formation of both carbon‐ and nitrogen‐centered radicals. Thus, we can conclude that the photodecomposition of sphingolipids and their analogues proceeds by Norrish type I reactions with the formation of both nitrogen‐centered and alkyl radicals.

Biochemistry & Molecular Biology↗

Flash-X Recipe Tools

SF-24-102 A code generation tool for Flash-X to support their performance portability using a domain-specific runtime library.

Lee, Youngjun↗

New WMO Certified Megaflash Lightning Extremes for Flash Distance (768 km) and Duration (17.01 seconds) Recorded from Space

Initial global extremes in lightning duration and horizontal distance were established in 2017 by an international panel of atmospheric lightning scientists and engineers assembled by the WMO. The subsequent launch of NOAA’s latest GOES-16/17 satellites with their Geostationary Lightning Mappers (GLMs) enabled extreme lightning to be monitored continuously over the western hemisphere up to 55⁰ latitude for the first time. Consequently, the former lightning extremes were more than doubled in 2019 to 709 km for distance and 16.730 s for duration. Continued detection and analysis of lightning “megaflashes” has now revealed two flashes that even exceed those 2019 records. As part of the ongoing work of the WMO in detection and documentation of global weather extremes, an international WMO evaluation committee was created to critically adjudicate these two GLM megaflash cases as new records for extreme lightning.

54 ENVIRONMENTAL SCIENCES↗

Selected 3D Flash-X Checkpoints for the Long-Time Evolution of a 9.6 Solar-Mass Core-Collapse Supernova Model

This dataset contains selected 3D Flash-X checkpoint files from the long-time evolution of a low-energy core-collapse supernova explosion of a 9.6 Msun zero-metallicity, low-mass iron-core progenitor. The checkpoints span the shock-breakout phase through the young-remnant phase, ending at approximately 3 yr after core bounce. The dataset is intended for follow-up analysis and post-processing, especially radiation-transport calculations using the hydrodynamic and compositional structure of the ejecta. For a full description of the numerical setup, physical assumptions, limitations, and interpretation of the simulation, users should refer to the associated paper.

79 ASTRONOMY AND ASTROPHYSICS↗

A Novel Platform for Evaluating Dose Rate Effects on Oxidative Damage to Peptides: Toward a High-Throughput Method to Characterize the Mechanisms Underlying the FLASH Effect

High dose rate radiation has gained considerable interest recently as a possible avenue for increasing the therapeutic window in cancer radiation treatment. The sparing of healthy tissue at high dose rates relative to conventional dose rates, while maintaining tumor control, has been termed the FLASH effect. Although the effect has been validated in animal models using multiple radiation sources, it is not yet well understood. Here, in this work, we demonstrate a new experimental platform for quantifying oxidative damage to protein sidechains in solution as a function of radiation dose rate and oxygen availability using liquid chromatography mass spectrometry. Using this reductionist approach, we show that for both X-ray and electron sources, isolated peptides in solution are oxidatively modified to different extents as a function of both dose rate and oxygen availability. Our method provides an experimental platform for exploring the parameter space of the dose rate effect on oxidative changes to proteins in solution.

61 RADIATION PROTECTION AND DOSIMETRY↗

Physics Flash [Newsletter] Winter 2020

The Winter 2020 edition of the Physics Flash newsletter is provided, highlighting activities in the LANL Physical Science Directorate.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

CTT: Tools for Fine Alignment of Flash X-ray Systems

The CTT code is a compilation of the python code that was prototyped in the interest of making a method for fine alignment of Flash X-ray Systems at the lab. It contains python code for interacting with LTT and running optimization loops using LTT simulations or ray tracing with RaySpace. It Includes classes for creating phantom objects and modular geometry objects in the simulations. It allows one to generate a random phantom that has been optimized to stay with a certain cubic volume and maximize the minimum distance between any two ball phantom centers in all projections. It was primarily made to work on ball phantoms which were simulated as Teflon spheres. It allows the alignment from some nominal position to some displaced position to simulate recovery of a real geometry from the nominal geometry of the system. Fine alignment can be done with the projections in LTT while a rough alignment is faster using rayspace. If rayspace works well for the use case it should be preferred since it is considerably faster and less resource intensive in general. Some Notes about using this code is that one will have to edit the imports for the files to get to the correct LTT path, LTT GUI path and to the CTT path when importing. This was made by using anaconda with python 3 on windows 10. The LTT code was stored in a anaconda environment which seemed to help the python find the LTT although it shouldn’t be necessary if you append the path in your code using sys.path.append(r'add the path you want here’). The sys.path.append method is a quick way to give your python code access to a given folder when running it (such as LTT or CTT). Note that since the code was originally made with paths for a specific machine that a new user will have to edit those paths to make it work in all the files that use the old paths. This is somewhat tedious but will be required to run the code on a new machine. The methodology used to run and make these notebooks starts with opening a command prompt as administrator in windows 10. After this one would activate the anaconda environment in the appropriate directory using “conda activate myenv” in the command prompt. After this open a jupyter-notebook using the keyword “jupyter-notebook". After that a notebook should open in a browser. Note that some libraries used may not come with anaconda so those may have to be installed. There shouldn’t be much though since the main things used are scipy, numpy, matplotlib, and LTT. LTTQuicksetup also requires some paths that will be specific to the computer so that should be changed as well.

42 ENGINEERING↗

Physics Flash Fall 2020

The Fall 2020 edition of Physics Flash includes article briefs on: Patrick Younk, Fusing concepts, technology to past performance of nuclear explosives; LANL inertial confinement fusion programs aims to develop burning plasma for weapons science; Lab's high energy nuclear physics explored at international conference; and, Novel study reveals new details on the impact of thermal interfaces in dynamic compression experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The use of soil moisture and Standardized Evaporative Stress Ratio (SESR) anomalies for increased lead time of the development flash drought and heat waves

Drought and rapid intensification of drought (i.e., flash drought) can have significant impacts on the natural environment and the economy, particularly when coupled with a period(s) of extreme heat (Otkin et al., 2018). The development and/or intensification of drought falls squarely in the sub-seasonal to seasonal (S2S) time frame, which dictates that drought development, intensification, and propagation could be an output of a subseasonal or seasonal forecast. Current S2S forecasts have poor skill for forecasting the development of extreme drought and heat waves.

54 ENVIRONMENTAL SCIENCES↗

Physics Flash (Summer 2021)

The Summer 2021 issue of Physics Flash includes a note from Physics Division Leader Tanja Pietraß, Physics Division staff in the news, LANSCE neutron beam transport, novel application of 'computer vision' techniques and using pRad to visualize electromagnetic fields.

43 PARTICLE ACCELERATORS↗

Physics Flash Winter 2022

This issue of Physics Flash features the recent success of our newest APS Fellow, Takeyasu Ito, and some of the new LDRD projects that are beginning this year. These projects will aid in setting the division’s future direction and I look forward to learning more as these projects progress. At the same time, new and exciting projects are being proposed for start in fiscal year 2023. The innovations that are captured in these proposals are important and will power the future of Physics Division.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗