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Phonon Dispersion Relation of Bulk Boron-Doped Graphitic Carbon
In this work, bulk turbostratic graphitic carbon of varying levels of disorder and chemical compositions has been synthesized by a direct synthesis method in the temperature range of 750–1100 °C, with a focus on boron incorporation within the graphitic lattice. The atomistic and electronic/vibrational structures were characterized by X-ray diffraction, energy-dispersive X-ray spectroscopy, Auger electron spectroscopy, X-ray absorption spectroscopy, and Raman spectroscopy. The phonon dispersion relation of graphitic carbon was found to be uniquely sensitive to substitutional boron doping, which perturbs the phonon structure while leaving the lattice structure unchanged. The dispersion relation of the D peak measured by Raman spectroscopy can be used to uniquely identify bulk graphitic materials containing a large content of ordered trigonal planar g-BC 3 units, which are of high interest in applications ranging from hydrogen storage to lithium-ion batteries.
The Curious Case of [AnH(NR 2 ) 3 ] (An = Th, U; R = SiMe 3 ): Two Monomeric Actinide Hydrides Revisited
The reaction of AnCl 4 (DME) x (An = Th, x = 2; An = U, x = 0) with 4 equiv of NaNR 2 (R = SiMe 3 ) in THF at 65 °C results in the formation of [An{N(R)(SiMe 2 CH 2 )}(NR 2 ) 2 ] (An = U, 1; An = Th, 2), and not the reported monomeric actinide hydrides, [AnH(NR 2 ) 3 ], as expected. Furthermore, both complexes 1 and 2 were characterized by X-ray crystallography. Surprisingly, their unit cell parameters are remarkably close to those reported for [AnH(NR 2 ) 3 ], suggesting that the original crystals of [AnH(NR 2 ) 3 ] were, in fact, [An{N(R)(SiMe 2 CH 2 )}(NR 2 ) 2 ], but were misidentified. Reduction of 1 with 1.1 equiv of KC 8 in THF, in the presence of 1 equiv of 2.2.2-cryptand, results in the formation of [K(2.2.2-cryptand)][U{N(R)(SiMe 2 CH 2 )}(NR 2 ) 2 ] (3) in good yield. Likewise, the reaction of 1 with 1 equiv of bis(diisopropylamino)cyclopropenylidene (BAC) results in the formation of the BAC adduct, [(BAC)U{N(R)(SiMe 2 CH 2 )}(NR 2 ) 2 ] (4), in moderate yield. Finally, the addition of H 2 (10 bar) to 2 in C 6 D 6 at room temperature results in the formation of the targeted monomeric hydride, [ThH(NR 2 ) 3 ], in 32% yield, according to integrations against an internal standard. However, removal of the H 2 atmosphere results in rapid reformation of 2. In contrast, the addition of H 2 (10 bar) to 1 in C 6 D 6 at room temperature results in no apparent reaction.
Mechanochemical synthesis and structural analysis of trivalent lanthanide and uranium diphenylphosphinodiboranates
Phosphinodiboranates (H 3 BPR 2 BH 3 – ) are a class of borohydrides that have merited a reputation as weakly coordinating anions, which is attributed in part to the dearth of coordination complexes known with transition metals, lanthanides, and actinides. We recently reported how K(H 3 BP t Bu 2 BH 3 ) exhibits sluggish salt elimination reactivity with f-metal halides in organic solvents such as Et 2 O and THF. Here we report how this reactivity appears to be further attenuated in solution when the t Bu groups attached to phosphorus are exchanged for R = Ph or H, and we describe how mechanochemistry was used to overcome limited solution reactivity with K(H 3 BPPh 2 BH 3 ). Grinding three equivalents of K(H 3 BPPh 2 BH 3 ) with UI 3 (THF) 4 or LnI 3 (Ln = Ce, Pr, Nd) allowed homoleptic complexes with the empirical formulas U(H 3 BPPh 2 BH 3 ) 3 (1), Ce(H 3 BPPh 2 BH 3 ) 3 (2), Pr(H 3 BPPh 2 BH 3 ) 3 (3), and Nd(H 3 BPPh 2 BH 3 ) 3 (4) to be prepared and subsequently crystallized in good yields (50–80%). Single-crystal XRD studies revealed that all four complexes exist as dimers or coordination polymers in the solid-state, whereas 1 H and 11 B NMR spectra showed that they exist as a mixture of monomers and dimers in solution. Treating 4 with THF breaks up the dimer to yield the monomeric complex Nd(H 3 BPPh 2 BH 3 ) 3 (THF) 3 (4-THF). XRD studies revealed that 4-THF has one chelating and two dangling H 3 BPPh 2 BH 3 – ligands bound to the metal to accommodate binding of THF. In contrast to the results with K(H 3 BPPh 2 BH 3 ), attempting the same mechanochemical reactions with Na(H 3 BPH 2 BH 3 ) containing the simplest phosphinodiboranate were unsuccessful; only the partial metathesis product U(H 3 BPH 2 BH 3 )I 2 (THF) 3 (5) was isolated in poor yields. Here, despite these limitations, our results offer new examples showing how mechanochemistry can be used to rapidly synthesize molecular coordination complexes that are otherwise difficult to prepare using more traditional solution methods.
A novel in-situ Raman spectroscopic cell for aqueous geochemistry at the solid–liquid interface
In-situ Raman spectroscopy has the potential to be a powerful technique for monitoring geochemical reactions at a solid–liquid interface in real time. In this article, we present the development and testing of an in-situ Raman spectroscopic cell, which can be used for reaction systems at moderate temperatures and pressure [<1000 psi (6.89 MPa), <100 °C, relevant to subsurface geologic systems] and can hold samples large enough for chemical mapping of heterogeneous rock surfaces. The system is validated by measuring the temperature-dependent conversion of gypsum to calcite over time. Near total conversion of gypsum to calcite on the mineral surface took 29 hours at room temperature and 150 minutes at 100 °C, corresponding to an 11.6-fold increase in the conversion rate. Further, we anticipate that this cell can be an important tool in quantifying the rates of carbon mineralization relevant to geologic carbon sequestration, particularly for the elevated rates recently observed in mafic/ultramafic rocks.
Electrolyte Solvation and Ionic Association. VII. Correlating Raman Spectroscopic Data with Solvate Species
Raman spectroscopy is a widely utilized method for determining information about the solvate species present in electrolyte solutions. Difficulties arise, however, when interpreting the Raman data in terms of correlating the spectroscopic vibrational bands with specific solvate species. Examples are provided to demonstrate how erroneous conclusions may be drawn with regard to the identity and population (distribution) of the solvent-separated ion pair (SSIP), contact ion pair (CIP) and aggregate (AGG) solvate species frequently mentioned in the scientific literature.
Building an ab initio solvated DNA model using Euclidean neural networks
Accurately modeling large biomolecules such as DNA from first principles is fundamentally challenging due to the steep computational scaling of ab initio quantum chemistry methods. This limitation becomes even more prominent when modeling biomolecules in solution due to the need to include large numbers of solvent molecules. We present a machine-learned electron density model based on a Euclidean neural network framework that includes a built-in understanding of equivariance to model explicitly solvated double-stranded DNA. By training the machine learning model using molecular fragments that sample the key DNA and solvent interactions, we show that the model predicts electron densities of arbitrary systems of solvated DNA accurately, resolves polarization effects that are neglected by classical force fields, and captures the physics of the DNA-solvent interaction at the ab initio level.
Neptunium (V) Solubility in the Presence and Absence of WIPP Relevant Ligands
CRA (Compliance Recertification Application)-2024 will update the oxidation state specific model used to calculate actinide solubility in the WIPP (Waste Isolation Pilot Plant). The pentavalent Np(V) ion is the most stable ion in solution within the An(V) series. This valence stability of Np(V) in aqueous solution makes Np a useful representative element for studying the aqueous complex chemistry of all An(V), but in the predicted WIPP scenario, this is the only TRU component that increases in the inventory with time as it is the main daughter product of 241 Am decay (alpha, n) so its relative importance increases throughout the 10,000-year performance period of the WIPP, it is only used to represent itself. This work is focused on confirming organic, borate and carbonate effects on solubility of Np(V) in WIPP simulated brines and 5 M NaCl and reassessing the predicted model speciation to strengthen the overall WIPP An(V) model.
Final Scientific Report for SPIRAL (9/1/21-8/31/25)
The final scientific report for our DOE-funded project covering the period 9/1/21-8/31/25
Chemical composition, coordination, and stability of Ca–organic associations in the presence of dissolving calcite
Environmental biotic and abiotic factors and soil physical, mineralogical, and chemical properties control the chemical composition of soil organic matter (SOM). Particularly, soil mineralogy and the presence of multivalent cations affect SOM labile fraction composition, stability, and environmental persistence. The persistence of SOM in aridic or limestone deposit derived soils, i.e., calcareous soils, has been partially attributed to SOM stabilization through adsorption or inclusion into the calcite mineral structure. Recently, however, it was shown that Ca(aq) released during calcite dissolution formed aqueous Ca–organic associations with OM components, which were unbound to mineral surface sites. This study investigates the structure, composition, and coordination of these associations by characterizing lyophilized Ca–organic containing solutions with spectromicroscopy [Scanning Transmission X-ray Microscopy (STXM)] and with a nanoimaging chemical probe [Infrared scattering-Scanning Nearfield Optical Microscopy (IR s-SNOM)]. Chemical stability of Ca–organic associations is furthermore determined with pyrolysis mass spectrometry analysis. The results demonstrate that Ca–organic associations are formed in the presence of dissolving calcite and OM components relevant to soil chemistry, i.e., lignin and amino acids. This study further reveals a spatial homogeneity of solution-derived (bi) carbonate in Ca–organic associations indicating for the first time that an inorganic anion, such as (bi)carbonate, may be part of these associations. Most likely, Ca ions are bound to both the (bi)carbonate and the organic components. These Ca (bi)carbonate–organic associations seem to have greater chemical stability than the pristine organic mixtures and, possibly, a higher environmental stability and reduced mineralization rate.
Open Chemistry, JupyterLab, REST, and quantum chemistry
Quantum chemistry must evolve if it wants to fully leverage the benefits of the internet age, where the worldwide web offers a vast tapestry of tools that enable users to communicate and interact with complex data at the speed and convenience of a button press. The Open Chemistry project has developed an open-source framework that offers an end-to-end solution for producing, sharing, and visualizing quantum chemical data interactively on the web using an array of modern tools and approaches. These tools build on some of the best open-source community projects such as Jupyter for interactive online notebooks, coupled with 3D accelerated visualization, state-of-the-art computational chemistry codes including NWChem and Psi4, and emerging machine learning and data mining tools such as ChemML and ANI. They offer flexible formats to import and export data, along with approaches to compare computational and experimental data.
Geochemical Modeling Using OLI Systems Mixed Solvent Electrolyte Model in Support of the Waste Isolation Pilot Plant
Aqueous electrolyte thermodynamic models were developed for synthetic Salado (GWB) and Castile (ERDA-6) brines to inform the experimental design and to facilitate laboratory data interpretation in geochemical studies supporting disposal in the Waste Isolation Pilot Plant (WIPP). The thermodynamic models, which include the relevant vapor-liquid-solid equilibria for the oxidation-reduction conditions of interest, enable computation of system parameters such as activity-based pH, E h [vs. standard hydrogen electrode (SHE)], ionic strength, total dissolved solids, and solution density; the chemical speciation of all phases; saturation tendencies for thermodynamically feasible solids; and changes in brine chemistry because of the addition of H 2 (g), argon, MgO, Fe(0), and other waste form components. The impacts of oxidation-reduction potential (ORP) and pH on aqueous speciation and dominant solid phases were also assessed with the aid of real-solution Pourbaix diagrams for key elements of interest. In addition to the OLI modeling results, limited measurement data for pH and ORP standards are provided, analyzed, and discussed.
Chemostatic concentration–discharge behaviour observed in a headwater catchment underlain with discontinuous permafrost
Concentration–discharge dynamics were evaluated in a small (~ 2.25 km2) headwater catchment underlain with discontinuous permafrost on the Seward Peninsula of western Alaska. A large storm, during which 48 mm of rain fell over a 24-h period, enabled the evaluation of solute concentration–discharge response to a sizeable hydrological event, while water stable isotopes enabled an appraisal of the contributions of event water. Under normal catchment conditions, chemostatic behaviour was observed for solutes typically derived from mineral weathering (e.g. calcium, magnesium, sodium and silica). The chemostatic behaviour observed for most solutes under normal catchment conditions indicated that catchment storage and residence times are sufficiently long for many solute generating reactions to approach equilibrium. Following the storm however, most solutes exhibited dilutive and highly variable behaviour. This likely indicated the exceedance of a discharge threshold where chemostatic behaviour could no longer be maintained for most solutes. Dissolved organic carbon and silica were the only solutes monitored to exhibit chemostatic behaviour during all time periods.
Local stress within a granular molecular solvent matrix, a mechanism for individual ion hydration
The activity of water is important in many natural systems and directed processes. To better understand water activity, the hydration of individual ions is approximated for a recently developed speciation-based solution model. Here a matrix of values for hydration of complete salts (anion and cation) was used as source data to calculate individual ion hydration values. Some electrolytes were excluded from calculations of individual ion hydration due to the prevalence of ion pairing and resulting liberation of water upon ion pairing. Evaluation of the periodic trends emerging from individual ion hydration values suggests that ionic volume, relative to the volume of molecular water, dictates both modeled hydration requirements (related to vapor-liquid-equilibrium-derived activity) as well as properties historically described by hydrodynamic radius (ion diffusion and solution viscosity). When water is conceptualized as a granular three-dimensional matrix, solutes may function as substitutional defects (dilation or constriction) inducing local compressive or tensile stress. These results have implications on the mechanism of the Hofmeister series and series reversals.
Multi-Scale Temporal Patterns in Stream Biogeochemistry Indicate Linked Permafrost and Ecological Dynamics of Boreal Catchments
Temporal patterns in stream chemistry provide integrated signals describing the hydrological and ecological state of whole catchments. However, stream chemistry integrates multi-scale signals of processes occurring in both the catchment and stream. Deconvoluting these signals could identify mechanisms of solute transport and transformation and provide a basis for monitoring ecosystem change. Here, we applied trend analysis, wavelet decomposition, multivariate autoregressive state-space modeling, and analysis of concentration-discharge relationships to assess temporal patterns in high-frequency (15 min) stream chemistry from permafrost-influenced boreal catchments in Interior Alaska at diel, storm, and seasonal time scales. We compared catchments that varied in spatial extent of permafrost to identify characteristic biogeochemical signals. Catchments with higher spatial extents of permafrost were characterized by increasing nitrate concentration through the thaw season, an abrupt increase in nitrate and fluorescent dissolved organic matter (fDOM) and declining conductivity in late summer, and flushing of nitrate and fDOM during summer rainstorms. In contrast, these patterns were absent, of lower magnitude, or reversed in catchments with lower permafrost extent. Solute dynamics revealed a positive influence of permafrost on fDOM export and the role of shallow, seasonally dynamic flowpaths in delivering solutes from high-permafrost catchments to streams. Lower spatial extent of permafrost resulted in static delivery of nitrate and limited transport of fDOM to streams. Shifts in concentration-discharge relationships and seasonal trends in stream chemistry toward less temporally dynamic patterns might therefore indicate reorganized catchment hydrology and biogeochemistry due to permafrost thaw.
An in situ generated polymer electrolyte via anionic ring-opening polymerization for lithium–sulfur batteries
The use of solid polymer electrolytes has previously proven to be an effective approach to address the lithium polysulfide dissolution and high electrode interfacial impedance of Li–S batteries via an in situ polymerization process. However, the conventional in situ synthesis employs a cationic ring-opening polymerization (CROP) of 1,3-dioxolane (DOL) catalyzed by a strong Lewis acid. New polymerization chemistry that is more compatible with Li–S chemistry needs to be developed to mitigate the disadvantages associated with the CROP process. Herein we report a new approach to in situ polymerize a set of new episulfide monomers in solution with LiTFSI salt via an anionic ring-opening polymerization (AROP). This new polymer system takes advantage of the inherent cell chemistry present in the Li–S cell through the nucleophilic lithium sulfides which are generated during the initial discharge cycle and act as the initiator for the polymerization. Additionally, their presence was shown to initiate the monomer solvents through AROP with no need for additional catalysts, rather than the more commonly utilized cationic systems which require an external Lewis acid catalyst. This work offers an important pathway toward in situ polymer electrolytes for Li–S batteries and offers a new avenue of exploration for polymer electrolyte synthesis.
New Compounds and Phase Selection of Nickel Sulfides via Oxidation State Control in Molten Hydroxides
Molten salts are promising reaction media candidates for the discovery of novel materials; however, they offer little control over oxidation state compared to aqueous solutions. Here, we demonstrated that when two hydroxides are mixed, their melts become fluxes with tunable solubility, which are surprisingly powerful solvents for ternary chalcogenides and offer effective paths for crystal growth to new compounds. We report that precise control of the oxidation state of Ni is achievable in mixed molten LiOH/KOH to grow single crystals of all known ternary K-Ni-S compounds. It is also possible to access several new phases, including a new polytope of β-K 2 Ni 3 S 4 , as well as low-valence KNi 4 S 2 and K 4 Ni 9 S 11 . KNi 4 S 2 is a two-dimensional low-valence nickel-rich sulfide, and β-K 2 Ni 3 S 4 has a hexagonal lattice. Moreover, using KNi 4 S 2 as a template, we obtained a new layered binary Ni 2 S by topotactic deintercalation of K. The new binary Ni 2 S has a van der Waals gap and can function as a new host layer for intercalation chemistry, as demonstrated by the intercalation of LiOH between its layers. The oxidation states of low-valence KNi 4 S 2 and Ni 2 S were studied using X-ray absorption spectroscopy and X-ray photoelectron spectroscopy. Density functional theory calculations showed large antibonding interactions at the Fermi level for both KNi 4 S 2 and Ni 2 S 2 corresponding to the flat-bands with large Ni-d$_{x^2}$$_{y^2}$ character.
Probing ethane phase changes in bead pack via high-field NMR spectroscopy
Phase equilibria analysis in two-phase systems requires discernment of the individual phases as well as the interfacial region. The phase behavior of fluids in constraint geometries have been studied through several techniques. High-Field Nuclear Magnetic Resonance (HF-NMR) can be used to detect fluid phases, i.e. gas, liquid, or supercritical fluid, in the bulk or under confinement. In solution-state HF-NMR, each phase exhibits a distinct chemical shift that correlates to the phase density. In turn, the emergence of multimodal in NMR spectra reveals the coexistence of multiple phases in fluid systems. Our results for ethane show that HF-NMR can enable tracking phase changes in the bulk, but also in macro-scale (10–100's μm in pore size) porous systems at various pressure and temperature conditions, even when the system us out of equilibrium. Finally, these results creates potential opportunities to investigate phase changes influenced by confinement in porous systems, though additional steps are necessary.