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DOE OSTI2023

Genetic encoding of 3–nitro–tyrosine reveals the impacts of 14–3–3 nitration on client binding and dephosphorylation

14–3–3 proteins are central hub regulators of hundreds of phosphorylated “client” proteins. They are subject to over 60 post–translational modifications (PTMs), yet little is known how these PTMs alter 14–3–3 function and its ability to regulate downstream signaling pathways. An often neglected, but well–documented 14–3–3 PTM found under physiological and immune–stimulatory conditions is the conversion of tyrosine to 3–nitro–tyrosine at several Tyr sites, two of which are located at sites considered important for 14–3–3 function: Y130 (β–isoform numbering) is located in the primary phospho–client peptide–binding groove, while Y213 is found on a secondary binding site that engages with clients for full 14–3–3/client complex formation and client regulation. By genetically encoding 3–nitro–tyrosine, we sought to understand if nitration at Y130 and Y213 effectively modulated 14–3–3 structure, function, and client complexation. The 1.5 Å resolution crystal structure of 14–3–3 nitrated at Y130 showed the nitro group altered the conformation of key residues in the primary binding site, while functional studies confirmed client proteins failed to bind this variant of 14–3–3. But, in contrast to other client–binding deficient variants, it did not localize to the nucleus. Further, the 1.9 Å resolution structure of 14–3–3 nitrated at Y213 revealed unusual flexibility of its C–terminal α–helix resulting in domain swapping, suggesting additional structural plasticity though its relevance is not clear as this nitrated form retained its ability to bind clients. Collectively, our data suggest that nitration of 14–3–3 will alter downstream signaling systems, and if uncontrolled could result in global dysregulation of the 14–3–3 interactome.

14-3-3↗

NASA NTRS2023

The Historical Greenland Climate Network (GC-Net) Curated and Augmented Level-1 Dataset

The Greenland Climate Network (GC-Net) consists of 31 automatic weather stations (AWSs) at 30 sites across the Greenland Ice Sheet. The first site was initiated in 1990, and the project has operated almost continuously since 1995 under the leadership of the late Konrad Steffen. The GC-Net AWS measured air temperature, relative humidity, wind speed, atmospheric pressure, downward and reflected shortwave irradiance, net radiation, and ice and firn temperatures. The majority of the GC-Net sites were located in the ice sheet accumulation area (17 AWSs), while 11 AWSs were located in the ablation area, and two sites (three AWSs) were located close to the equilibrium line altitude. Additionally, three AWSs of similar design to the GC-Net AWS were installed by Konrad Steffen's team on the Larsen C ice shelf, Antarctica. After more than 3 decades of operation, the GC-Net AWSs are being decommissioned and replaced by new AWSs operated by the Geological Survey of Denmark and Greenland (GEUS). Therefore, making a reassessment of the historical GC-Net AWS data is necessary. We present a full reprocessing of the historical GC-Net AWS dataset with increased attention to the filtering of erroneous measurements, data correction and derivation of additional variables: continuous surface height, instrument heights, surface albedo, turbulent heat fluxes, and 10 m ice and firn temperatures. This new augmented GC-Net level-1 (L1) AWS dataset is now available at https://doi.org/10.22008/FK2/VVXGUT (Steffen et al., 2023) and will continue to be refined. The processing scripts, latest data and a data user forum are available at https://github.com/GEUS-Glaciology-and-Climate/GC-Net-level-1-data-processing (last access: 30 November 2023). In addition to the AWS data, a comprehensive compilation of valuable metadata is provided: maintenance reports, yearly pictures of the stations and the station positions through time. This unique dataset provides more than 320 station years of high-quality atmospheric data and is available following FAIR (findable, accessible, interoperable, reusable) data and code practices.

Greenland Climate Network↗

DOE OSTI2026

Public water supply infrastructure extensification and diversification in surface waters is insufficient to meet future demands in Texas

The data were developed to evaluate the capacity of existing and potential new surface water supply infrastructure to meet projected public water demands across districts in Texas under multiple future socioeconomic and climate scenarios. The database integrates hydrologic, water quality, infrastructure, energy, cost, demographic, and demand-projection information for candidate surface water supply locations. Candidate sites include stream reaches, waterbodies, reservoir surplus locations, and potential new reservoir sites. Water availability is characterized using historical and projected flow conditions, while site suitability is evaluated using five indicators: Water Availability Index (WAI), Water Quality Index (WQI), Energy Requirement Index (ERI), Water Treatment Cost (WTC), and Water Infrastructure Cost (WIC). The datasets include statewide candidate-site information, district-level demand projections under Shared Socioeconomic Pathways (SSPs), runoff-based allocation constraints, climate-stress metrics, and optimization outputs evaluating alternative infrastructure planning strategies. Optimization results compare Business-as-Usual (BAU) and All Surface Water (AllSW) demand-management approaches under both scaled and fixed cost-cap strategies. Associated validation datasets provide district-level feasibility assessments, infrastructure selection outcomes, cost-cap utilization, demand satisfaction metrics, and constraint diagnostics. Additional datasets quantify projected changes in storage and flow conditions as well as water availability stress for both existing and newly selected intake locations under the SSP5 scenario for mid-century and late-century climate conditions. Together, these datasets support assessment of the extent to which surface-water infrastructure expansion and diversification strategies can satisfy future public water demands while accounting for hydrologic, economic, and planning constraints across Texas. Dataset(s) Description Dataset_preoptimization.xlsx Comprehensive pre-optimization dataset containing candidate water-supply sites and associated hydrologic, water-quality, infrastructure, climate, demographic, runoff, and demand-projection variables used as inputs to the optimization analyses. Includes variable descriptions and the full statewide candidate-site database. District_level_site_selection.zip - Compressed archive containing all SSP-specific district-level optimization result files MESIO_ssp1_results.xlsx District-level site selection results for SSP1 (MESIO). Includes variable descriptions, BAU and AllSW site-selection results under scaled and fixed cost strategies, and district-level validation diagnostics. MESID_ssp2_results.xlsx District-level site selection results for SSP2 (MESID). Includes variable descriptions, BAU and AllSW site-selection results under scaled and fixed cost strategies, and district-level validation diagnostics. LCMRD_ssp3_results.xlsx District-level site selection results for SSP3 (LCMRD). Includes variable descriptions, BAU and AllSW site-selection results under scaled and fixed cost strategies, and district-level validation diagnostics. IRDev-Low_ssp4l_results.xlsx District-level site selection results for SSP4-Low (IRDev-Low). Includes variable descriptions, BAU and AllSW site-selection results under scaled and fixed cost strategies, and district-level validation diagnostics. IRDev-High_ssp4h_results.xlsx District-level site selection results for SSP4-High (IRDev-High). Includes variable descriptions, BAU and AllSW site-selection results under scaled and fixed cost strategies, and district-level validation diagnostics. RSIM_ssp5_results.xlsx District-level site selection results for SSP5 (RSIM). Includes variable descriptions, BAU and AllSW site-selection results under scaled and fixed cost strategies, and district-level validation diagnostics. tx_hydrological_stress.xlsx Hydrological stress dataset for existing and newly selected intake locations. Includes projected mid-century and late-century changes, gain/loss classifications, planning strategy information, and accompanying variable descriptions. Also includes water-stress metrics derived from historical and projected low-flow conditions.

Okoye, Perpetua I. (ORCID:0000000215545033)↗

NASA NTRS1987

Estimating population size of Pygoscelid Penguins from TM data

An estimate was made toward a continent wide population of penguins. The results indicate that Thematic Mapper data can be used to identify penguin rookeries due to the unique reflectance properties of guano. Strong correlations exist between nesting populations and rookery area occupied by the birds. These correlations allow estimation of the number of nesting pairs in colonies. The success of remote sensing and biometric analyses leads one to believe that a continent wide estimate of penguin populations is possible based on a timely sample employing ground based and remote sensing techniques. Satellite remote sensing along the coastline may well locate previously undiscovered penguin nesting sites, or locate rookeries which have been assumed to exist for over a half century, but never located. Observations which found that penguins are one of the most sensitive elements in the complex of Southern Ocean ecosystems motivated this study.

Olson, Charles E., Jr.↗

DOE OSTI2022

AmeriFlux FLUXNET-1F US-NR1 Niwot Ridge Forest (LTER NWT1)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-NR1 Niwot Ridge Forest (LTER NWT1). This is the FLUXNET version of the carbon flux data for the site US-NR1 Niwot Ridge Forest (LTER NWT1) produced by applying the standard ONEFlux (1F) software. Site Description - The Niwot Ridge US-NR1 AmeriFlux site is located in a subalpine forest ecosystem 8 km east of the Continental Divide near Nederland, CO. The site is located at 3050 m elevation, within 600m of the LTER C-1 long-term monitoring station. The subalpine forest at the site was selectively logged in the early 1900s and the forest has not had any major disturbance since then (Burns, S.P., (2018), The Influence of Warm-Season Precipitation on Water Cycling and the Surface Energy Budget within and just-above a Colorado Subalpine Forest in Mountainous Terrain: Measurements and Modeling, PhD Thesis, https://scholar.colorado.edu/geog_gradetds/125/). Additional data, photos, and information can be found at: Burns S. P., P. D. Blanken, and R. K. Monson (2020): Data, Photographs, Videos, and Information for the Niwot Ridge Subalpine Forest (US-NR1) AmeriFlux site. AmeriFlux Management Project. https://doi.org/10.15485/1671825

Blanken, Peter D.↗

DOE OSTI2024

Machine learning snow depth predictions at sites in Alaska, Norway, Siberia, Colorado and New Mexico

Temporally continuous snow depth estimates are vital for understanding changing snow patterns in the Arctic and impacts on permafrost. We trained random forest machine learning models to predict snow depth from temperature data recorded at or just below the ground surface. Training data was collected at the Teller 27 Watershed and Kougarok 64 Hillslope during the 2021 - 2022 water year on the Seward Peninsula, Alaska using distributed temperature profiling (DTP) systems. We then applied this model to other sites where ground surface or shallow soil temperature data was available for at least one water year (see Related Datasets). Many of these temperature measurements were collocated with snow depth observations. Ground surface temperature (i.e. snow-ground interface temperature) is easy to measure using small, cheap and easy-to-deploy temperature sensors such as iButtons and TinyTags, and such measurements have previously been used to calculate a variety of snow metrics (e.g. snow onset date). However, this is the first study to estimate snow depth directly from ground surface temperature data. The present dataset contains one *.csv file which includes machine learning snow depth predictions at sites in Alaska, Norway, Siberia, Colorado, and New Mexico and one *.kml file including the locations of sites with snow depth predictions. No training data predictions are included in the *.csv file. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy’s Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy’s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Say where you sample: Increasing site selection transparency in urban ecology

Urban ecological studies have the potential to extend our understanding of socio-ecological systems beyond that of an individual city or region. Cross-comparative empirical work and synthesis are imperative to develop a general urban ecological theory. This can be achieved only if studies are replicable and generalizable. Transparency in methods reporting facilitates generalizability and replicability by documenting the decisions scientists make during the various steps of research design; this is particularly true for sampling design and selection because of their impact on both internal and external validity and the potential to unintentionally introduce bias. Three interdependent aspects of sample design are study sample selection (e.g., specific organisms, soils, or water), sample specification (measurement of specific variable of interest), and site selection (locations sampled). Of these, documentation of site selection—the where component of sample design—is underrepresented in the urban ecology literature. Using a stratified random sample of 158 papers from 12 major urban ecology journals, we investigated how researchers selected study sites in urban ecosystems and evaluated whether their site selection methods were transparent. We extracted data from these papers using a 50-question, theory-based questionnaire and a multiple-reviewer approach. Our sample represented almost 45 years of urban ecology research across 40 different countries. We found that more than 80% of the papers read were not transparent in their site selection methodology. We do not believe site selection methods are replicable for 70% of the papers read. Key weaknesses include incomplete descriptions of populations and sampling frames, urban gradients, sample selection methods, and property access. Low transparency in reporting the where methodology limits urban ecologists’ ability to assess the internal and external validity of studies’ findings and to replicate published studies; it also limits the generalizability of existing studies. The challenges of low transparency are particularly relevant in urban ecology, a field where standard protocols for site selection and delineation are still being developed. These limitations interfere with the fields’ ability to build theory and inform policy. We conclude by offering a set of recommendations to increase transparency, replicability, and generalizability.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Impact of burning on soil properties and respiration; Wood Buffalo National Park, Canada; June 2019

In this study, we used burn simulations on boreal forest soil under high and low moisture conditions to investigate the effect of burning on soil temperature, soil properties such as pH, total C and total C, and soil respiration. Location and site characteristic data of 19 sampling locations within Wood Buffalo National Park, Canada are included in "sampling-site-characteristics.csv". File "Temp-all-burns.csv" contains temperature data collected 2 to 9 cm below the soil surface during 2 min. heat treatment (i.e. burn simulation) and the following 5-24 hrs. Following the burn simulations, total respiration from burned and unburned soil was collected via KOH base traps for up to 6 months ("raw-conductivity-readings.csv"). The metadata file ("all-sample-metadata.csv") contains measurements of soil pH, total C, and total N of O horizon and underlying mineral soil as well as model fits for respiration data.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

AmeriFlux US-UiC University of Illinois Maize-Soy

This is the AmeriFlux version of the carbon flux data for the site US-UiC University of Illinois Maize-Soy. Site Description - Agricultural field planted with maize in a three year rotation with soy (maize-maize-soy). The first soy rotation year was 2010. This field is typically planted in May and harvested in October. This site is located at an experimental farm approximately 2 miles south of the University of Illinois at Urbana Champaign and is colocated with (500-1000m distance) all other Us-Ui sites.

Bernacchi, Carl J↗

DOE OSTI2020

2018 Long-Term Hydrologic Monitoring Program Report for Rio Blanco, Colorado, Site

This report presents the monitoring data collected by the U.S. Department of Energy (DOE) Office of Legacy Management (LM) at the Rio Blanco, Colorado, Site (Figure 1). The Rio Blanco site was the location of an underground nuclear test during which three nuclear devices were detonated nearly simultaneously in a single borehole in 1973. The test resulted in residual radionuclide contamination at the detonation depths of 5840, 6230, and 6690 feet (ft) (DOE 2015). Monitoring includes the collection of samples from groundwater wells and surface water locations near the site to assess for any potential impacts that may be attributed to the Rio Blanco nuclear test. This report summarizes the laboratory analytical results obtained from the sampling event conducted in 2018. This annual report and previous reports are available on the LM public website at https://www.lm.doe.gov/rio_blanco/Sites.aspx. Data collected during this and previous monitoring events are available on the Geospatial Environmental Mapping System (GEMS) website at https://gems.lm.doe.gov/#site=RBL.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2022

Non-Resource Conservation and Recovery Act Corrective Action Unit (CAU) Post-Closure Inspection Report, Nevada National Security Site, Nevada (CY2021, Revision 0)

This report includes visual inspection results, maintenance and repair activities, and recommendations for calendar year (CY) 2021 for use restrictions (URs) at corrective action sites (CASs) located on the Nevada National Security Site (NNSS) and on the Nevada Test and Training Range (NTTR) that are accessed through the NNSS Main Gate. This document is formatted by project activity (i.e., Industrial Sites, Soils, and Defense Threat Reduction Agency [DTRA]); then by corrective action unit (CAU); and then by CAS.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Non-Resource Conservation and Recovery Act Corrective Action Unit (CAU) Post-Closure Inspection Report, Nevada National Security Site, Nevada For Calendar Year 2022

This report includes visual inspection results, descriptions of maintenance and repair activities, and recommendations for calendar year (CY) 2022 for use restrictions (URs) at corrective action sites (CASs) located on the Nevada National Security Site (NNSS) and on the Nevada Test and Training Range (NTTR) that are accessed through the NNSS Main Gate. This document is formatted by project activity (i.e., Industrial Sites, Soils, and Defense Threat Reduction Agency [DTRA]); then by corrective action unit (CAU); and then by CAS.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2026

Non-Resource Conservation and Recovery Act Corrective Action Unit (CAU) Post-Closure Inspection Report, Nevada National Security Site, Nevada For Calendar Year 2025

This report includes visual inspection results, descriptions of maintenance and repair activities, and recommendations for CY 2025 for use restrictions (URs) at corrective action sites (CASs) located on the Nevada National Security Site and on the Nevada Test and Training Range (NTTR) that are accessed through the NNSS Main Gate. This document is arranged by project activity (i.e., Industrial Sites, Soils, and Defense Threat Reduction Agency [DTRA]); then by corrective action unit (CAU); and then by CAS. Post-closure UR inspections are performed on an annual basis, unless as noted in text. Post-closure UR inspections verify the condition of physical controls required by each UR, which may include the following activities: • Visual verification of the legibility of signs • Visual inspection of fencing, signs, monuments, and/or markers for indications of wear • Visual inspection of soil covers for indications of subsidence, erosion, or unauthorized use Deficiencies in UR requirements that were identified during CY 2024 inspections and not addressed in the CY 2024 report are addressed in this CY 2025 report.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2011

Method for Identifying Probable Archaeological Sites from Remotely Sensed Data

Archaeological sites are being compromised or destroyed at a catastrophic rate in most regions of the world. The best solution to this problem is for archaeologists to find and study these sites before they are compromised or destroyed. One way to facilitate the necessary rapid, wide area surveys needed to find these archaeological sites is through the generation of maps of probable archaeological sites from remotely sensed data. We describe an approach for identifying probable locations of archaeological sites over a wide area based on detecting subtle anomalies in vegetative cover through a statistically based analysis of remotely sensed data from multiple sources. We further developed this approach under a recent NASA ROSES Space Archaeology Program project. Under this project we refined and elaborated this statistical analysis to compensate for potential slight miss-registrations between the remote sensing data sources and the archaeological site location data. We also explored data quantization approaches (required by the statistical analysis approach), and we identified a superior data quantization approached based on a unique image segmentation approach. In our presentation we will summarize our refined approach and demonstrate the effectiveness of the overall approach with test data from Santa Catalina Island off the southern California coast. Finally, we discuss our future plans for further improving our approach.

Tilton, James C.↗

NASA NTRS2011

A Diagnostic Test for Determining the Location of the GeV Emission in Powerful Blazars

An issue currently under debate in the literature is how far from the black hole is the Fermi-observed GeV emission of powerful blazars emitted. Here we present a clear diagnostic tool for testing whether the Ge V emission site is located within the sub-pc broad emission line (BLR) region or further out in the few pc scale molecular torus (MT) environment. Within the BLR the scatteri~ takes place at the onset of the Klein-Nishina regime, causing the electron cooling time to become almost energy independent and as a result, the variation of high-energy emission is expected to be achromatic. Contrarily, if the emission site is located outside the BLR, the expected GeY variability is energy-dependent and with amplitude increasing with energy. We demonstrate this using time-dependent numerical simulations of blazar variability.

Dotson, Amanda↗

DOE OSTI2023

Plan for a Data Base Approach to Evaluating LWR Plant Integration with Hydrogen and Industrial Facilities

The purpose of this report is to provide an outline and scope of a database tool that could be used to identify the most beneficial locations to site a hydrogen, chemical facility or other industrial facility that would be powered by nuclear energy. This energy may be in the form of electricity produced by the plant, heat in the form of steam or both. In addition, this siting tool should consider factors such as economics, geography, industries, residences, geological hydrogen storage, and key infrastructure. The infrastructure to be considered could include pipelines or other storage and transportation facilities to carry the created products from the production facility to the end user. Also considered should be infrastructure that could deliver needed chemicals or gasses to allow the production of desired products such as ammonia or biofuels. This data base tool should allow a screening study of all U.S. nuclear plants to identify opportunities and barriers to creating hydrogen hubs around nuclear power plants. For this effort, it has been decided that the Siting Tool for Advanced Nuclear Development (STAND) would be used to conduct this screening study which is a follow-on research project to this present effort. Currently, plans are being developed to modify the STAND tool to provide the capability necessary to perform screening of each US commercial nuclear plant to identify the best locations to site hydrogen or chemical production facilities. Many features of the current STAND tool will be employed to meet this objective, but additional infrastructure data (such as the location of pipelines) may need to be added to allow these locations to be fully vetted. In addition, new analysis capabilities may need to be added so economic considerations can be understood

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2026

AmeriFlux FLUXNET-1F US-A10 ARM-NSA-Barrow

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-A10 ARM-NSA-Barrow. This is the FLUXNET version of the carbon flux data for the site US-A10 ARM-NSA-Barrow produced by applying the standard ONEFlux (1F) software. Site Description - This site is located at ARM North Slope of Alaska site near Barrow, AK

Sullivan, Ryan [Argonne National Laboratory]↗

DOE OSTI2021

NGEE Arctic Plant Traits: Fine Roots, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016

Soil cores were collected from twelve vegetation biomass plots at the Kougarok hillslope in late July of 2016. The sampled plots were located across six ecotypes present at this site (n=2 replicates per ecotype). Soil cores were separated into depth intervals in the field and frozen for transport to Oak Ridge National Laboratory. Data package contains one *.csv and one *.pdf.Laboratory sample processing of these soils generated depth-specific data on soil properties as well as fine root biomass, length, %C, %N, delta13C, and delta15N. Only live fine roots were analyzed. Fine roots were not separated by species or plant functional type.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy’s Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy’s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗