Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “reach code”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 397 records · Page 22

A fast particle-mesh simulation of non-linear cosmological structure formation with massive neutrinos

Quasi-N-body simulations, such as FastPM, provide a fast way to simulate cosmological structure formation, but have yet to adequately include the effects of massive neutrinos. In this work, we present a method to include neutrino particles in FastPM, enabling computation of the CDM and total matter power spectra to percent-level accuracy in the non-linear regime. The CDM-neutrino cross-power can also be computed at a sufficient accuracy to constrain cosmological observables. To avoid the shot noise that typically plagues neutrino particle simulations, we employ a quasi-random algorithm to sample the relevant Fermi-Dirac distribution when setting the initial neutrino thermal velocities. We additionally develop an effective distribution function to describe a set of non-degenerate neutrinos as a single particle to speed up non-degenerate simulations. The simulation is accurate for the full range of physical interest, M ν ≲ 0.6eV, and applicable to redshifts z ≲ 2. Such accuracy can be achieved by initializing particles with the two-fluid approximation transfer functions (using the REPS package). Convergence can be reached in ~ 25 steps, with a starting redshift of z=99. Probing progressively smaller scales only requires an increase in the number of CDM particles being simulated, while the number of neutrino particles can remain fixed at a value less than or similar to the number of CDM particles. In turn, the percentage increase in runtime-per-step due to neutrino particles is between ~ 5-20% for runs with 1024 3 CDM particles, and decreases as the number of CDM particles is increased. The code has been made publicly available, providing an invaluable resource to produce fast predictions for cosmological surveys and studying reconstruction.

79 ASTRONOMY AND ASTROPHYSICS↗

SU-E-T-350: Effective Point of Measurement and Total Perturbation Correction P for Parallel-Plate Ion Chambers in High-Energy Photon Beams

Purpose: This paper aims to determine the effective point of measurement and the total perturbation correction p of parallel-plate chambers for clinical photon dosimetry. Methods: The effective point of measurement (EPOM) was calculated using the EGSnrc Monte Carlo code system with the EGSnrc user code egs- chamber. Depth dose curves of the ionization chambers were calculated in a water phantom for several high energy photon spectra (4, 6, 10, 15, 18 MV-X). Different normalization criterions (normalization to the maximum of the depth dose curve and normalization to the value in 10 cm depth) have been applied. The EPOM was determined by shifting the normalized depth dose curve of a small water voxel against the depth ionization curve until the disagreement (calculated by the root mean square deviation) reaches a minimum. In addition, the total perturbation correction p was calculated by the ratio of the dose to water and the product of the dose determined in the chamber and the water to air stopping power ratio. Results: The EPOM varied slightly depending on the chosen normalization criterion. For all chambers the necessary shift of the EPOM decreased linearly with increasing beam quality specifier TPR{sub 20/10}. For the Roos and NACP chamber, the results were positive suggesting that the chambers need to be shifted towards the focus. For the Markus chamber, the required shift was negative and for the Advanced Markus chamber partly negative and partly positive. The total perturbation correction p was almost independent of the depth. Only for regions below 1 cm the perturbation correction deviated significantly from unity. Conclusion: In the present study, the effective point of measurement and the total perturbation correction p was determined for four parallel-plate ionization chambers and five clinical relevant photon spectra. Applying the calculated EPOM, the residual perturbation correction p was mostly depth independent.

60 APPLIED LIFE SCIENCES↗

Reconstruction for Liquid Argon TPC Neutrino Detectors Using Parallel Architectures [Slides]

Neutrinos are particles that interact rarely, so identifying them requires large detectors which produce lots of data. Processing this data with the computing power available is becoming more difficult as the detectors increase in size to reach their physics goals. In liquid argon time projection chambers (TPCs) the charged particles from neutrino interactions produce ionization electrons which drift in an electric field towards a series of collection wires, and the signal on the wires is used to reconstruct the interaction. The MicroBooNE detector currently collecting data at Fermilab has 8000 wires, and planned future experiments like DUNE will have 100 times more, which means that the time required to reconstruct an event will scale accordingly. Modernization of liquid argon TPC reconstruction code, including vectorization, parallelization and code portability to GPUs, will help to mitigate these challenges. The liquid argon TPC hit finding algorithm within the L arSoft framework used across multiple experiments has been vectorized and parallelized. This increases the speed of the algorithm on the order of ten times within a stand alone version on Intel architectures. This new version has been incorporated back into LarSoft so that it can be generally used. These methods will also be applied to other low level reconstruction of the wire signals such as the deconvolution. The applications and performance of this modernized liquid argon TPC wire reconstruction will be presented.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

BISON microstructure-based pulverization criterion in high burnup structure

To improve the economics of commercial nuclear power production, utilities are seeking to increase the allowable burnup limit of UO$_2$ fuel. One of the main factors that contributes to the current burnup limit of 62 GWd/MTU in commercial light water reactors (LWRs) is the risk of fine fragmentation or pulverization during a loss of coolant accident (LOCA). Pulverization primarily occurs at high burnups, especially when the high burnup structure (HBS) has formed. To allow the industry to pursue increased burnup and develop mitigation strategies, it is essential to have improved capability to predict the onset of pulverization. However, the mechanism of pulverization is not well understood, and the existing predictive capabilities implemented in the BISON fuel performance code are empirical in nature. In this report, mesoscale simulations are used to improve understanding of the formation mechanism of the HBS and how it responds during a LOCA transient, and inform development of a BISON pulverization criterion. A phase-field model was used to simulate the evolution of bubble pressure as a result of HBS formation. The simulations showed that gas atoms diffuse from grain interiors to the new grain boundaries created during HBS formation, and diffuse rapidly along these grain boundaries to reach existing bubbles. This causes an increase in bubble pressure in existing bubbles, leading to bubble growth during steady-state operation. To simulate the response of HBS bubbles to a LOCA transient, a newly developed phase-field model was used; in agreement with preliminary results from FY20, bubble size did not change significantly during the duration of the transient. A phase-field fracture model was used to study fragmentation patterns in the HBS, including using input from the phase-field model as initial conditions. Phase-field fracture simulations were used to determine a pulverization criterion for BISON. A function for the critical pressure for pulverization to occur was fit to data from the phase-field fracture simulations, and this function was implemented as a material property in BISON. For comparison, an analytical criterion for pulverization was developed and implemented within the same material property.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Reconstruction for Liquid Argon TPC Neutrino Detectors Using Parallel Architectures.

Neutrinos are particles that interact rarely, so identifying them re-quires large detectors which produce lots of data. Processing this data with thecomputing power available is becoming more dicult as the detectors increasein size to reach their physics goals. In liquid argon time projection chambers(TPCs) the charged particles from neutrino interactions produce ionization elec-trons which drift in an electric field towards a series of collection wires, and thesignal on the wires is used to reconstruct the interaction. The MicroBooNEdetector currently collecting data at Fermilab has 8000 wires, and planned fu-ture experiments like DUNE will have 100 times more, which means that thetime required to reconstruct an event will scale accordingly. Modernization ofliquid argon TPC reconstruction code, including vectorization, parallelizationand code portability to GPUs, will help to mitigate these challenges. The liquidargon TPC hit finding algorithm within theLArSoftframework used acrossmultiple experiments has been vectorized and parallelized. This increases thespeed of the algorithm on the order of ten times within a standalone version onIntel architectures. This new version has been incorporated back intoLArSoftso that it can be generally used. These methods will also be applied to otherlow-level reconstruction algorithms of the wire signals such as the deconvolu-tion. The applications and performance of this modernized liquid argon TPCwire reconstruction will be presented.

Berkman, Sophie↗

Application of LES-CFD for predicting pulverized-coal working conditions after installation of NOx control system

The upcoming environmental requirements outlined at the 2017 European Commission Integrated Pollution Prevention and Control (IPPC) are becoming more and more strict in comparison to the existing standards – IED 2010/75/EU. Questions arise about changes in boiler operating conditions after the adoption of the regulations to fulfill specified emission limits. Of initial concern is the question of which technology to pursue in order to reach the specified level of NOx emissions at 150 mg/Nm 3 @6%O 2 . By introducing an air staging technique the NOx limit can be partially achieved; however these changes affect the boiler operation in a detrimental way. In order to investigate impact of de-NOx installation on the temperature and heat flux distribution, numerical techniques can be used. In order to determine the impact of the changes in the boiler operation, here this paper presents the application of an advanced, multiphase open-source code Arches, developed at the University of Utah for modeling pulverized-coal combustion using Large-Eddy Simulation (LES). Numerical simulations showed the effect on the boiler's working parameters e.g., heat-transfer rate, temperature distribution, species concentration, and NOx emission before and after proposed modifications.

54 ENVIRONMENTAL SCIENCES↗

Propagation of EMIC Waves From Shabansky Orbits in the Dayside Magnetosphere

We explore the characteristics of EMIC waves generated in a non-dipole, compressed magnetic field at the minimum of the magnetic field. We conducted 2D full-wave simulations using the Petra-M code, focusing on a compressed magnetic field in the outer dayside magnetosphere for a range of L values (L = 8 - 10). By comparing the simulation results with MMS observations, we aim to understand how the observed wave characteristics are affected by a shifting source region across different L-shells. Our findings indicate that the direction of the Poynting vector systematically changes depending on the local source location of the wave, which is consistent with the observations. EMIC waves propagate along the magnetic field line and reach both the northern and southern hemispheres; however, there is a notable difference in the power of EMIC waves between the two hemispheres, indicating seasonal asymmetries in their occurrence.

58 GEOSCIENCES↗

Center for Extended Magnetohydrodrynamic Modeling

This work used the NIMROD code to solve two tokamak regimes found on the DIII-D tokamak. The first regime studied is the Quiescent H-mode regime that has the advantage of enabling tokamak high performance without the deleterious effects of Edge Localized Modes (ELMs). ELMs are a possible impediment to the success of tokamaks as a burning plasma reactor and the QH mode regime provides a mechanism for avoiding it. The QH mode achieves this state due to the appearance of long wavelength instability that saturates instead of reaching an ELM state. NIMROD simulations were able to describe many of the features of a particular discharge, including the importance of shear flow in reaching the state, the role of the parallel heat flux to decorrelate the temperature and velocity fluctations, and in the correlation of density and velocity fluctations to provide the density pumpout. This work resulted in two direct publications and an invited talk. Progress towards these publications resulted in two more publications (verification and solving the Grad-Shafranov equation with scrape-off-layer currents). The second regime studied was the Giant Sawtooth regime whereby energetic particles affect the stability of the 1/1 mode. This work resulted in performance improvements of NIMROD's energetic particle algorithms, and improvements to the drift-kinetic equation infrastructure used by both continuum and energetic particle closure methods. The studies proved more computationally demanding than expected because as the 1/1 is stabilized, the near marginal conditions cause long simulations times. Publication of this work is in progress under other funding.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Benchmark Specification for FFTF LOFWOS Test #13

The Fast Flux Test Facility (FFTF) at the Hanford site in Washington was designed by the Westinghouse Electric Corporation for the U.S. Department of Energy. FFTF was a 400 MW thermal, oxide-fueled, liquid sodium cooled test reactor, built to assist development and testing of advanced fuels and materials for fast breeder reactors. After reaching criticality in 1980, FFTF operated until 1992, providing the U.S. Department of Energy (DOE) with the means to test fuels, materials, and other components in a fast neutron flux environment. In July 1986, a series of unprotected transients (with the plant protection system intentionally disabled) were performed in FFTF as part of the passive safety demonstration program. Among these were thirteen loss of flow without scram (LOFWOS) tests. The goals of this program included confirming the liquid metal reactor safety margins, providing data for computer code validation, and demonstrating the inherent and passive safety benefits of specific design features. The test defined in this benchmark is LOFWOS Test #13, which was initiated at 50% power and 100% flow with the pump pony motors turned off. This benchmark specification is intended to support collaborative efforts within international partnerships on the validation of simulation tools and models in the area of Sodium-cooled Fast Reactor (SFR) safety. Validated tools and models are needed to evaluate SFR inherent safety characteristics and assess the impact of passive design features in response to accident initiators. Comparisons with experimental data and the results of safety analyses from other groups create unique opportunities to improve predictive capabilities of computational codes and methods for SFR modeling and simulation. The conditions of the LOFWOS test along with the feedback from FFTF’s limited free bow core restraint system and the novel passive reactivity control Gas-Expansion Modules (GEMs) pose a very challenging and uniquely valuable benchmark exercise.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Flower‐Type Organized Trade‐Wind Cumulus: A Multi‐Day Lagrangian Large Eddy Simulation Intercomparison Study

Shallow cumulus cloud fields in subtropical marine trade wind environments, particularly over the tropical Atlantic Ocean, show distinct organizational patterns. Among these, Flower‐type clouds are characterized by expansive stratiform cloud patches surrounded by regions of scattered convection. The objectives of this study were (a) to construct a case study of a time period during the EUREC 4 A/ATOMIC field campaign when Flower‐type organization was observed, (b) to evaluate the fidelity of a multi‐model ensemble of large eddy simulations of that case, and (c) to analyze the interaction between cloud and precipitation processes and mesoscale organization in the simulations. The simulations follow a quasi‐Lagrangian trajectory, allowing mesoscale features to develop over time in a domain that follows the boundary‐layer airmass. The results show a broad agreement in simulated thermodynamic properties across different LES codes, with Flower‐type cloud patches appearing within hours of each other. The consensus among models is consistent with observations made during the EUREC 4 A/ATOMIC field campaign on the specific day of interest. The cloud structure reveals three distinct peaks in the joint probability densities of cloud base and cloud top height, with the dominant peak at any given time influenced by the stage of cloud organization. The simulated cloud system evolution reveals consistent occurrence of maxima in liquid water path and rain rate before Flower reaches its maximum length scale. Targeted sensitivity tests reveal a weak relationship between Cloud Droplet Number concentration and the extent/degree/type of organization.

EUREC4A↗

Building the Scale Model TELBOT Master Arm - 19585

For centuries, the art and science of modeling have gone hand in hand with the advancements of technology. Among the most impressive examples of the past modeling were ship models constructed for the British Royal Navy. Referred to as Admiralty models, they were principally constructed during the 18. and 19. centuries to depict proposed warship design. To this day, models are important in the field of engineering, where analytical modeling of a new design needs to be verified. In our project the old practice of building models will be fortified by the most advanced software and 3-D printing technology and used to manufacture a fully working Telbot Master Arm scaled down to 0.4-0.5 of its original size. The Telbot is a robotic arm used in different fields like the nuclear and chemical industry, often in combination with other products of our company. The main features of the Telbot's sleek construction are: 1) the high load capacity design; 2) unlimited rotation of all axes; 3) no external or internal wiring of the arm; 4) unlimited, fast and precise arm movements; 5) smooth and sealed arm bodies and joints; 6) high repeat accuracy; 7) resistance to radiation, and it can handle precise loads from 5 kg to 150 kg. Presently, to demonstrate such impressive design features and movement possibilities to its customers, HWM has to build a 3-D virtual reality simulation of the environment where Telbot is proposed to be used and then the arm simulates its movement in this environment. In addition, though HWM does have a showroom for Telbot, due to its weight and size it is not possible to take the full size Telbot on the road to show off its capabilities to customers. The challenge is to build a scaled down full working version of the Telbot robotic arm that can be moved in every direction and angle. The model will be based on the redeveloped T300 Telbot, with 3 joints and 7 free to move pivots. It will be at a 0.4 or 0.5 scale. The outer shell will be 3D printed. The sensors will forward the position and angle to HWM virtual reality software. With these features, any changes made on the model would get displayed in the software one-to-one. The result will be a Telbot Master arm model which can be easily transported; Waellischmiller would be able to present the Telbot not just virtually, but as a real product with all its functions and versatility and show it all over the world. The extensive construction of the virtual 3-D stimulation can be eliminated and the course of movement to reach specific positions could get simulated faster and easier. It can also be used internally and externally for training. This paper will address the challenges, materials used and manufacturing process of building a fully-working scaled-down version of the Telbot Master Arm. (authors)

3D PRINTING↗

Role of poloidal E × B drift in divertor heat transport in DIII‐D

Abstract Simulations for DIII‐D high confinement mode plasmas with the multifluid code UEDGE show a strong role of poloidal E × B drifts on divertor heat transport, challenging the paradigm of conduction‐limited scrape‐off layer (SOL) transport. While simulations with reduced drift magnitude are well aligned with the assumption that electron heat conduction dominates the SOL heat transport, simulations with drifts predict that the poloidal convective E × B heat transport dominates over electron heat conduction in both attached and detached conditions. As poloidal E × B flow propagates across magnetic field lines, poloidal transport with shallow magnetic pitch angles can reach values that are of the same order as would be provided by sonic flows parallel to the field lines. These flows can lead to strong convection‐dominated divertor heat transport, increasing the poloidal volume of radiative power front, consistent with previous measurements at DIII‐D. Due to these convective flows, the Lengyel integral approach, assuming zero convective fraction, is expected to provide a pessimistic estimate for the radiative capability of impurities in the divertor. For the DIII‐D simulations shown here, the Lengyel integral approach underestimates the radiated power by a factor of 6, indicating that, for reliable DIII‐D divertor power exhaust predictions, full two‐dimensional (2D) calculations, including drifts, would be necessary.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Evaluation of gamma-ray transmission through rectangular collimator slits for application in nuclear fuel spectrometry

Gamma-ray spectrometry is widely applied in several science fields, and in particular in non-destructive gamma scanning and gamma emission tomography of irradiated nuclear fuel. Usually, a collimator is used in the experimental setup, to selectively interrogate a region of interest in the fuel. For the optimization of instrument design, as well as for planning measurement campaigns, predictive models for the transmitted gamma-ray intensity through the collimator are needed. Commonly, Monte Carlo Radiation Transport tools are used for accurate prediction of gamma-ray transport, however, the long computation time requirements when used in low-efficiency experimental setups present challenges. Here, the full-energy peak intensity transmitted through a rectangular collimator slit was examined. A uniform planar surface source emitting isotropically was considered, and the rate of photons reaching an ideal counter plane on the opposite side of the collimator was evaluated by analytical integration. To find a closed-form primitive function, some idealizations were required, and thereby parametric models were obtained for the optical field of view, dependent on slit dimensions (length, height and width) and source-to-collimator distance. For contributions from outside the optical field of view, where a closed-form expression cannot be found, fast numerical integral methods were instead used. The results were validated using the Monte Carlo code MCNP6 and show an agreement within three percent for the numerical method. For the analytical method, deviations up to tens of percent were obtained, which is deemed to still be sufficient for instrument design and measurement planning, where often the order of magnitude of the count rate is not a priori known. The method is planned for use in iterative optimization routines in the design of Gamma Emission Tomography devices, as well as for the prediction of gamma spectra obtained in the planning of fuel inspections. An application of the proposed method was demonstrated in spectrum prediction for a short cooling-time fuel rod test from the Halden reactor.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Review of Monte Carlo simulations for backgrounds from radioactivity

For all experiments dealing with the rare event searches (neutrino, dark matter, neutrino-less double-beta decay), the reduction of the radioactive background is one of the most important and difficult tasks. There are basically two types of background, electron recoils and nuclear recoils. The electron recoil background is mostly from the gamma rays through the radioactive decay. The nuclear recoil background is from neutrons from spontaneous fission, (α, n) reactions and muoninduced interactions (spallations, photo-nuclear and hadronic interaction). The external gammas and neutrons from the muons and laboratory environment, can be reduced by operating the detector at deep underground laboratories and by placing active or passive shield materials around the detector. The radioactivity of the detector materials also contributes to the background; in order to reduce it a careful screening campaign is mandatory to select highly radio-pure materials. In this review I present the status of current Monte Carlo simulations aimed to estimate and reproduce the background induced by gamma and neutron radioactivity of the materials and the shield of rare event search experiment. For the electromagnetic background a good level of agreement between the data and the MC simulation has been reached by the XENON100 and EDELWEISS experiments, using the GEANT4 toolkit. For the neutron background, a comparison between the yield of neutrons from spontaneous fission and (α, n) obtained with two dedicated softwares, SOURCES-4A and the one developed by Mei-Zhang-Hime, show a good overall agreement, with total yields within a factor 2 difference. The energy spectra from SOURCES-4A are in general smoother, while those from MZH presents sharp peaks. The neutron propagation through various materials has been studied with two MC codes, GEANT4 and MCNPX, showing a reasonably good agreement, inside 50% discrepancy.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The emergence of negative superhumps in cataclysmic variables: Smoothed particle hydrodynamics simulations

Negative superhumps are believed to arise in cataclysmic variable systems when the accretion disk is tilted with respect to the orbital plane. Slow retrograde precession of the line-of-nodes results in a signal—the negative superhump—with a period slightly less than the orbital period. Previous studies have shown that tilted disks exhibit negative superhumps, but a consensus on how a disk initially tilts has not been reached. Analytical work by Lai (1999, ApJ, 524, 1030) suggests that a magnetic field on the primary can lead to a tilt instability in a disk when the dipole moment is offset in angle from the spin axis of the primary and when the primary’s spin axis is, itself, not aligned with the angular momentum axis of the binary orbit. However, Lai did not apply his work to the formation of negative superhumps. In this paper, we add Lai’s model to an existing smoothed particle hydrodynamics code. Using this code, we demonstrate the emergence of negative superhumps in the “light curve” for a range of magnetic dipole moments. We show that the period deficits calculated from these negative superhumps match those in simulations using manually tilted disks. When positive superhumps appear (q≲0.33), we show that the period excesses calculated from these signals are also consistent with previous results. Using examples, we show that the disks are tilted, though the tilt varies periodically, and that they precess in the retrograde direction. The magnetic fields found to lead to the emergence of negative superhumps lie in the kilogauss regime.

79 ASTRONOMY AND ASTROPHYSICS↗

Error-Detectable Bosonic Entangling Gates with a Noisy Ancilla

Bosonic quantum error correction has proven to be a successful approach for extending the coherence of quantum memories, but to execute deep quantum circuits, high-fidelity gates between encoded qubits are needed. To that end, we present a family of error-detectable two-qubit gates for a variety of bosonic encodings. From a new geometric framework based on a “Bloch sphere” of bosonic operators, we construct ZZ L ⁡(θ) and exponential-swap(θ) gates for the binomial, four-legged cat, dual-rail, and several other bosonic codes. The gate Hamiltonian is simple to engineer, requiring only a programmable beam splitter between two bosonic qubits and an ancilla dispersively coupled to one qubit. This Hamiltonian can be realized in circuit QED hardware with ancilla transmons and microwave cavities. The proposed theoretical framework was developed for circuit QED but is generalizable to any platform that can effectively generate this Hamiltonian. Crucially, one can also detect first-order errors in the ancilla and the bosonic qubits during the gates. We show that this allows one to reach error-detected gate fidelities at the 0.01% level with today’s hardware, limited only by second-order hardware errors.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

HBMax: Optimizing Memory Efficiency for Parallel Influence Maximization on Multicore Architectures

The goal of influence maximization is to select k most-influential vertices or seeds in a network, where influence is defined by a given diffusion process. The problem has a number of important applications such as viral marketing, information spread, and epidemic control. Although computing optimal seed set is NP-Hard, due to the submodular nature of the problem efficient approximation algorithms exist. However, even state-of-the-art parallel implementations are limited by a sampling step that incurs large memory footprints. This in turn limits the problem size reach and approximation quality. In this work, we study the memory footprint of the sampling process collecting reverse reachability information in the IMM algorithm over large real-world social networks. We present an adaptive and memory-efficient optimization approach for a state-of-the-art multi-threaded parallel influence maximization algorithm. Our approach,HuffMax, uses a portion of the reverse reachable (RR) sets collected by the algorithm to learn the characteristics of the graph. Then, it compresses the intermediate reverse reachability information with Huffman coding, and queries directly on the compressed data to preserve the memory savings obtained through compression. We also propose an efficient sampling strategy based on the distribution of RR sets, which can further reduce the computation time for typical social networks with long-tail distributions. Considering a NUMA architecture, we scale up our solution on 128-core CPUs and reduce the memory footprint by up to 45.7% with negligible time overhead (or even faster) and without perceivable loss of accuracy.

Chen, Xinyu↗

The Fungal Cell Death Regulator czt-1 Is Allelic to acr-3

Fungal infections have far-reaching implications that range from severe human disease to a panoply of disruptive agricultural and ecological effects, making it imperative to identify and understand the molecular pathways governing the response to antifungal compounds. In this context, CZT-1 (cell death-activated zinc cluster transcription factor) functions as a master regulator of cell death and drug susceptibility in Neurospora crassa. Here we provide evidence indicating that czt-1 is allelic to acr-3, a previously described locus that we now found to harbor a point mutation in its coding sequence. This nonsynonymous amino acid substitution in a low complexity region of CZT-1/ACR-3 caused a robust gain-of-function that led to reduced sensitivity to acriflavine and staurosporine, and increased expression of the drug efflux pump abc-3. Thus, accumulating evidence shows that CZT-1 is an important broad regulator of the cellular response to various antifungal compounds that appear to share common molecular targets.

59 BASIC BIOLOGICAL SCIENCES↗