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At least 397 records · Page 22

Mitochondrial impairment observed in fibroblasts from South African Parkinson’s disease patients with parkin mutations

Highlights: • Mitochondrial dysfunction observed in patients with parkin-null mutations. • Mitochondrial ATP levels were decreased. • Electron-dense vacuoles were observed in the patients. • Mitochondria from muscle biopsies appeared within normal limits. • One patient did not show these defects possibly due to compensatory mechanisms. - Abstract: Parkinson’s disease (PD), defined as a neurodegenerative disorder, is characterized by the loss of dopaminergic neurons in the substantia nigra in the midbrain. Loss-of-function mutations in the parkin gene are a major cause of autosomal recessive, early-onset PD. Parkin has been implicated in the maintenance of healthy mitochondria, although previous studies show conflicting findings regarding mitochondrial abnormalities in fibroblasts from patients harboring parkin-null mutations. The aim of the present study was to determine whether South African PD patients with parkin mutations exhibit evidence for mitochondrial dysfunction. Fibroblasts were cultured from skin biopsies obtained from three patients with homozygous parkin-null mutations, two heterozygous mutation carriers and two wild-type controls. Muscle biopsies were obtained from two of the patients. The muscle fibers showed subtle abnormalities such as slightly swollen mitochondria in focal areas of the fibers and some folding of the sarcolemma. Although no differences in the degree of mitochondrial network branching were found in the fibroblasts, ultrastructural abnormalities were observed including the presence of electron-dense vacuoles. Moreover, decreased ATP levels which are consistent with mitochondrial dysfunction were observed in the patients’ fibroblasts compared to controls. Remarkably, these defects did not manifest in one patient, which may be due to possible compensatory mechanisms. These results suggest that parkin-null patients exhibit features of mitochondrial dysfunction. Involvement of mitochondria as a key role player in PD pathogenesis will have important implications for the design of new and more effective therapies.

60 APPLIED LIFE SCIENCES↗

First snowflake divertor experiments in MAST-U tokamak

First snowflake (SF) divertor experiments in the MAST-U tokamak demonstrated steady-state snowflake-plus divertor configurations in 450 kA ohmic L-mode plasmas. The SF divertor configuration features a second poloidal field (PF) null in the divertor region close by or overlapping with the main X-point. The resulting low PF region and two additional divertor legs (strike points) may lead to additional power and particle flux sharing via a hypothesized convective cell, and increased plasma-wetted area and radiation. The free-boundary Grad–Shafranov equilibrium code FIESTA was used to design SF configurations with several inter-null distances and orientations. In the experiment, the SF configurations with inter-null distances 0.13–0.20 m and lasting 0.2–0.3 s were obtained. Parallel connection lengths between the midplane and the outer strike point in the SF configurations (evaluated at field lines 1–2 mm from the separatrix in the midplane) were 25–30 m, higher than in the standard divertor (20–25 m) or the Super-X divertor (25 m). Diagnostic measurements highlighted salient SF features. The infra-red video bolometer diagnostic showed that the radiated power peaking in the PF null region was not as pronounces as in the standard divertor. Divertor ion fluxes measured by target Langmuir probes showed increased ion flux in the plate region where a secondary SF strike point landed, concomitantly with the SF formation. These measurements may suggest that some particle and heat redistribution was taking place in the convective SF zone. The first SF experiments provide a basis for future SF studies in MAST-U tokamak with higher input power, improved plasma control and diagnostic measurements, to be compared with the modeling predictions of plasma convective SF mixing and lower density strike point detachment threshold.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse

FVB/N mice wild-type, heterozygous or null for Cyp 1b1 were used in a two-stage skin tumor study comparing PAH, benzo[a]pyrene (BaP), dibenzo[def,p]chrysene (DBC), and coal tar extract (CTE, SRM 1597a). Following 20 weeks of promotion with TPA the Cyp 1b1 null mice, initiated with DBC, exhibited reductions in incidence, multiplicity, and progression. None of these effects were observed with BaP or CTE. The mechanism of Cyp 1b1-dependent alteration of DBC skin carcinogenesis was further investigated by determining expression of select genes in skin from DBC-treated mice 2, 4 and 8 h post-initiation. A significant reduction in levels of Cyp 1a1, Nqo1 at 8 h and Akr 1c14 mRNA was observed in Cyp 1b1 null (but not wt or het) mice, whereas no impact was observed in Gst a1, Nqo 1 at 2 and 4 h or Akr 1c19 at any time point. Cyp 1b1 mRNA was not elevated by DBC. The major covalent DNA adducts, dibenzo[def,p]chrysene-(±)-11,12-dihydrodiol-cis and trans-13,14-epoxide-deoxyadenosine (DBCDE-dA) were quantified by UHPLC-MS/MS 8 h post-initiation. Loss of Cyp1 b1 expression reduced DBCDE-dA adducts in the skin but not to a statistically significant degree. The ratio of cis- to trans-DBCDE-dA adducts was higher in the skin than other target tissues such as the spleen, lung and liver (oral dosing). These results document that Cyp 1b1 plays a significant role in bioactivation and carcinogenesis of DBC in a two-stage mouse skin tumor model and that loss of Cyp 1b1 has little impact on tumor response with BaP or CTE as initiators. - Highlights: • Cyp1b1 null mice exhibit lower skin cancer sensitivity to DBC but not BaP or CTE. • Cyp1b1 expression impacts expression of other PAH metabolizing enzymes. • cis/trans-DBCDE-dA ratio significantly higher in the skin than the spleen, lung or liver • Potency of DBC and CTE in mouse skin is higher than predicted by RPFs.

60 APPLIED LIFE SCIENCES↗

Role of TRPA1 in acute cardiopulmonary toxicity of inhaled acrolein

Acrolein is a highly toxic, volatile, unsaturated aldehyde generated during incomplete combustion as in tobacco smoke and indoor fires. Because the transient receptor potential ankyrin 1 (TRPA1) channel mediates tobacco smoke-induced lung injury, we assessed its role in high-level acrolein-induced toxicity in mice. Acrolein (100–275 ppm, 10–30 min) caused upper airway epithelial sloughing, bradypnea and oral gasping, hypothermia, cardiac depression and mortality. Male wild-type mice (WT, C57BL/6; 5–52 weeks) were significantly more sensitive to high-level acrolein than age-matched, female WT mice. Both male and female TRPA1-null mice were more sensitive to acrolein-induced mortality than age- and sex-matched WT mice. Acrolein exposure increased lung weight:body weight ratios and lung albumin and decreased plasma albumin to a greater extent in TRPA1-null than in WT mice. Lung and plasma protein-acrolein adducts were not increased in acrolein-exposed TRPA1-null mice compared with WT mice. To assess TRPA1-dependent protective mechanisms, respiratory parameters were monitored by telemetry. TRPA1-null mice had a slower onset of breathing rate suppression (‘respiratory braking’) than WT mice suggesting TRPA1 mediates this protective response. Surprisingly, WT male mice treated either with a TRPA1 antagonist (HC030031; 200 mg/kg) alone or with combined TRPA1 (100 mg/kg) and TRPV1 (capsazepine, 10 mg/kg) antagonists at 30 min post-acrolein exposure (i.e., “real world” delay in treatment) were significantly protected from acrolein-induced mortality. These data show TRPA1 protects against high-level acrolein-induced toxicity in a sex-dependent manner. Post-exposure TRPA1 antagonism also protected against acrolein-induced mortality attesting to a complex role of TRPA1 in cardiopulmonary injury. - Highlights: • TRPA1 protects mice against toxicity and mortality of inhaled high-level acrolein. • TRPA1 protection against inhaled high-level acrolein is sex-dependent in mice. • Age (5–52 weeks old) was not a determinant of acrolein-induced mortality in mice. • TRPA1 antagonist is protective after inhaled high-level acrolein in male mice.

60 APPLIED LIFE SCIENCES↗

Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus.

60 APPLIED LIFE SCIENCES↗

A quantum trajectory picture of single photon absorption and energy transport in photosystem II

Here, we use quantum trajectory theory to study the dynamics of the first step in photosynthesis for a single photon interacting with photosystem II (PSII). By considering individual trajectories we are able to look beyond the ensemble average dynamics to compute the PSII system evolution conditioned upon individual photon counting measurements. Measurements of the transmitted photon beam strongly affects the system state, since detection of an outgoing photon confirms that the PSII must be in the electronic ground state, while a null measurement implies it is in an excited electronic state. We show that under ideal conditions, observing the null result transforms a state with a low excited state population to a state with nearly all population contained in the excited states. We study the PSII dynamics conditioned on such photon counting for both a pure excitonic model of PSII and a more realistic model with exciton-phonon coupling to a dissipative phononic environment. In the absence of such coupling, we show that the measured fluorescence rates show oscillations constituting a photon-counting witness of excitonic coherence. Excitonic coupling to the phonon environment has a strong effect on the observed rates of fluorescence, damping the oscillations. Addition of non-radiative decay and incoherent transitions to radical pair states in the reaction center to the phononic model allows extraction of a quantum efficiency of 92.5% from the long-time evolution, consistent with bulk experimental measurements.

Coherent states↗

Magnetic relaxation, current sheets, and structure formation in an extremely Tenuous fluid medium

The process of relaxation of a unidirectional magnetic field in a highly conducting tenuous fluid medium is considered. Null points of the field play a critical role in this process. During an initial stage of relaxation, variations in magnetic pressure are eliminated, and current sheets build up in the immediate neighborhood of null points. This initial phase is followed by a long diffusive phase of slow algebraic decay of the field, during which fluid is continuously sucked into the current sheets, leading to exponential growth of fluid density and concentration of mass around the null points, which show a tendency to cluster. Ultimately, this second phase of algebraic decay gives way to a final period of exponential decay of the field. The peaks of density at the null points survive as a fossil relic of the decay process. Numerical solution of the governing equations provides convincing confirmation of this three-stage scenario. Generalizations to two- and three-dimensional fields are briefly considered.

79 ASTRONOMY AND ASTROPHYSICS↗

ON THE 2012 OCTOBER 23 CIRCULAR RIBBON FLARE: EMISSION FEATURES AND MAGNETIC TOPOLOGY

Circular ribbon flares are usually related to spine-fan type magnetic topology containing null points. In this paper, we investigate an X-class circular ribbon flare on 2012 October 23, using the multiwavelength data from the Solar Dynamics Observatory, Hinode, and RHESSI. In Ca ii H emission, the flare showed three ribbons with two highly elongated ones inside and outside a quasi-circular one, respectively. A hot channel was displayed in the extreme-ultraviolet emissions that infers the existence of a magnetic flux rope. Two hard X-ray (HXR) sources in the 12–25 keV energy band were located at the footpoints of this hot channel. Using a nonlinear force-free magnetic field extrapolation, we identify three topological structures: (1) a three-dimensional null point, (2) a flux rope below the fan of the null point, and (3) a large-scale quasi-separatrix layer (QSL) induced by the quadrupolar-like magnetic field of the active region. We find that the null point is embedded within the large-scale QSL. In our case, all three identified topological structures must be considered to explain all the emission features associated with the observed flare. Besides, the HXR sources are regarded as the consequence of the reconnection within or near the border of the flux rope.

79 ASTRONOMY AND ASTROPHYSICS↗

DETECTING UNSPECIFIED STRUCTURE IN LOW-COUNT IMAGES

Unexpected structure in images of astronomical sources often presents itself upon visual inspection of the image, but such apparent structure may either correspond to true features in the source or be due to noise in the data. This paper presents a method for testing whether inferred structure in an image with Poisson noise represents a significant departure from a baseline (null) model of the image. To infer image structure, we conduct a Bayesian analysis of a full model that uses a multiscale component to allow flexible departures from the posited null model. As a test statistic, we use a tail probability of the posterior distribution under the full model. This choice of test statistic allows us to estimate a computationally efficient upper bound on a p-value that enables us to draw strong conclusions even when there are limited computational resources that can be devoted to simulations under the null model. We demonstrate the statistical performance of our method on simulated images. Applying our method to an X-ray image of the quasar 0730+257, we find significant evidence against the null model of a single point source and uniform background, lending support to the claim of an X-ray jet.

79 ASTRONOMY AND ASTROPHYSICS↗

Internal delensing of Planck CMB temperature and polarization

We present a first internal delensing of CMB maps, both in temperature and polarization, using the public foreground-cleaned (SMICA) Planck 2015 maps. After forming quadratic estimates of the lensing potential, we use the corresponding displacement field to undo the lensing on the same data. We build differences of the delensed spectra to the original data spectra specifically to look for delensing signatures. After taking into account reconstruction noise biases in the delensed spectra, we find an expected sharpening of the power spectrum acoustic peaks with a delensing efficiency of 29 % (TT) 25 % (TE) and 22 % (EE). The detection significance of the delensing effects is very high in all spectra: 12 σ in EE polarization; 18 σ in TE; and 20 σ in TT. The null hypothesis of no lensing in the maps is rejected at 26 σ. While direct detection of the power in lensing B-modes themselves is not possible at high significance at Planck noise levels, we do detect (at 4.5 σ {under the null hypothesis}) delensing effects in the B-mode map, with 7 % reduction in lensing power. Our results provide a first demonstration of polarization delensing, and generally of internal CMB delensing, and stand in agreement with the baseline ΛCDM Planck 2015 cosmology expectations.

79 ASTRONOMY AND ASTROPHYSICS↗

Modeling Snowflake Divertors in MAST-U Tokamak

We report that in a snowflake (SF) divertor, two magnetic field nulls are placed close to each other, creating four strike points (SPs) compared to two in a standard X-point divertor. In preparation for MAST-U experiments, magnetic configurations with the standard and SF divertors with various locations and separation distances of the nulls were modeled using the two-dimensional multi-fluid code UEDGE with a full plasma transport model featuring charge-state-resolved sputtered carbon impurities. The complex interplay of the plasma transport and magnetic configurations was comprehensively studied using a simple model for the theoretically predicted fast plasma mixing driven by the 'churning' mode instability in the two-null SF region. The modeling results show that (1) all SF-plus configurations and SF-minus configuration with closely located nulls produce the same plasma parameters and heat fluxes at the same SPs; (2) SF divertors approach the outer and inner SP detachment conditions at lower upstream density w.r.t. the standard divertor; (3) heat flux profiles at primary SPs are substantially broadened and peak values are reduced in SF configurations w.r.t. SN divertors; this broadening becomes more pronounced with the fast plasma mixing increase.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

New procedure for evaluation of U(3) coupling and recoupling coefficients

A simple method to calculate Wigner coupling coefficients and Racah recoupling coefficients for U(3) in two group–subgroup chains is presented. While the canonical U(3) coupling and recoupling coefficients are applicable to any system that respects U(3) symmetry, the U(3) coupling coefficients are more specific to nuclear structure studies. This new procedure precludes the use of binomial coefficients and alternating sums which were used in the 1973 formulation of Draayer and Akiyama, and in so doing provides a faster and more accurate determination of any and all required results. The resolution of the outer multiplicity is based on the null space concept of the U(3) generators proposed by Alex et al., whereas the inner multiplicity in the angular momentum subgroup chain is obtained from the dimension of the null space of the SO(3) raising operator. It is anticipated that a C++ library will ultimately be available for determining generic coupling and recoupling coefficients associated with both the canonical and the physical group–subgroup chains of U(3).

Cross-Coupling Reaction↗

Mapping and simulating systematics due to spatially-varying observing conditions in DES science verification data

Spatially-varying depth and characteristics of observing conditions, such as seeing, airmass, or sky background, are major sources of systematic uncertainties in modern galaxy survey analyses, in particular in deep multi-epoch surveys. We present a framework to extract and project these sources of systematics onto the sky, and apply it to the Dark Energy Survey (DES) to map the observing conditions of the Science Verification (SV) data. The resulting distributions and maps of sources of systematics are used in several analyses of DES SV to perform detailed null tests with the data, and also to incorporate systematics in survey simulations. We illustrate the complementarity of these two approaches by comparing the SV data with the BCC-UFig, a synthetic sky catalogue generated by forward-modelling of the DES SV images. We then analyse the BCC-UFig simulation to construct galaxy samples mimicking those used in SV galaxy clustering studies. We show that the spatially-varying survey depth imprinted in the observed galaxy densities and the redshift distributions of the SV data are successfully reproduced by the simulation and well-captured by the maps of observing conditions. The combined use of the maps, the SV data and the BCC-UFig simulation allows us to quantify the impact of spatial systematics on N(z), the redshift distributions inferred using photometric redshifts. We conclude that spatial systematics in the SV data are mainly due to seeing fluctuations and are under control in current clustering and weak lensing analyses. However, they will need to be carefully characterised in upcoming phases of DES in order to avoid biasing the inferred cosmological results. The framework presented is relevant to all multi-epoch surveys, and will be essential for exploiting future surveys such as the Large Synoptic Survey Telescope, which will require detailed null-tests and realistic end-to-end image simulations to correctly interpret the deep, high-cadence observations of the sky.

79 ASTRONOMY AND ASTROPHYSICS↗

Apparatus for providing a servo drive signal in a high-speed stepping interferometer

An analog voltage approximately linearly proportional to a desired offset from the present null position of a moving mirror in an interferometer is applied to the mirror moving means. As the mirror moves to the next null position, as determined by the analog voltage, the fringes of a laser reference interference pattern are detected. At the occurrence of each fringe the analog voltage is reduced proportionally so that when the next null position is reached, this driving analog is effectively zero. A binary up/down counter, by its internal count, causes a digital/analog converter to supply the analog voltage to the mirror moving means. Fringe detection and direction of movement logic cause the binary up/down counter to be decremented from its offset count as the mirror is moved to the new null position. Undesirable movement of the mirror due to vibration or other sources causes a correcting drive signal to be applied to the mirror moving means that is proportional to the distance of movement.

Schindler, R. A.↗

A near-optimum receiver structure for the detection of M-ary optical PPM signals

A class of receivers called conditionally nulling receivers is defined for quantum noise limited optical communications. These receivers have the ability to decide at each moment in time whether or not to coherently combine a predetermined local oscillator field with the received optical field, prior to performing an energy measurement (photodetection) on the combined field. Conditionally nulling receivers are applicable to pulse position modulation and related modulation schemes, which have the property that, at each moment in time, the transmitted signal is in one of only two states, on or off. The local oscillator field which may or may not be added by the receiver is an exact replica of the negative of the received on field; hence, the receiver can exactly null the on signal if the on signal is present and the receiver chooses to use the local field. An ideal conditionally nulling receiver achieves very nearly the same error probability (within a multiplicative factor varying froom 1 to 2.15) as the optimum quantum measurement for quantum noise limited detection of M-ary PPM signals. In contrast, other known receiving methods, such as direct, heterodyne, and homodyne detection, are exponentially suboptimum.

Dolinar, S. J., Jr.↗

Steering Law Design for Redundant Single Gimbal Control Moment Gyro Systems

The correspondence between robotic manipulators and single gimbal Control Moment Gyro (CMG) systems was exploited to aid in the understanding and design of single gimbal CMG Steering laws. A test for null motion near a singular CMG configuration was derived which is able to distinguish between escapable and unescapable singular states. Detailed analysis of the Jacobian matrix null-space was performed and results were used to develop and test a variety of single gimbal CMG steering laws. Computer simulations showed that all existing singularity avoidance methods are unable to avoid Elliptic internal singularities. A new null motion algorithm using the Moore-Penrose pseudoinverse, however, was shown by simulation to avoid Elliptic type singularities under certain conditions. The SR-inverse, with appropriate null motion was proposed as a general approach to singularity avoidance, because of its ability to avoid singularities through limited introduction of torque error. Simulation results confirmed the superior performance of this method compared to the other available and proposed pseudoinverse-based Steering laws.

Bedrossian, Nazareth Sarkis↗

An Assessment of Magnetic Conditions for Strong Coronal Heating in Solar Active Regions by Comparing Observed Loops with Computed Potential Field Lines

We report further results on the magnetic origins of coronal heating found from registering coronal images with photospheric vector magnetograms. For two complementary active regions, we use computed potential field lines to examine the global non-potentiality of bright extended coronal loops and the three-dimensional structure of the magnetic field at their feet, and assess the role of these magnetic conditions in the strong coronal heating in these loops. The two active regions are complementary, in that one is globally potential and the other is globally nonpotential, while each is predominantly bipolar, and each has an island of included polarity in its trailing polarity domain. We find the following: (1) The brightest main-arch loops of the globally potential active region are brighter than the brightest main- arch loops of the globally strongly nonpotential active region. (2) In each active region, only a few of the mainarch magnetic loops are strongly heated, and these are all rooted near the island. (3) The end of each main-arch bright loop apparently bifurcates above the island, so that it embraces the island and the magnetic null above the island. (4) At any one time, there are other main-arch magnetic loops that embrace the island in the same manner as do the bright loops but that are not selected for strong coronal heating. (5) There is continual microflaring in sheared core fields around the island, but the main-arch bright loops show little response to these microflares. From these observational and modeling results we draw the following conclusions: (1) The heating of the main-arch bright loops arises mainly from conditions at the island end of these loops and not from their global non-potentiality. (2) There is, at most, only a loose coupling between the coronal heating in the bright loops of the main arch and the coronal heating in the sheared core fields at their feet, although in both the heating is driven by conditions/events in and around the island. (3) The main-arch bright loops are likely to be heated via reconnection driven at the magnetic null over the island. The details of how and where (along the null line) the reconnection is driven determine which of the split-end loops are selected for strong heating. (4) The null does not appear to be directly involved in the heating of the sheared core fields or in the heating of an extended loop rooted in the island. Rather, these all appear to be heated by microflares in the sheared core field.

Gary, G. A.↗

Determination of the Charon/Pluto Mass Ratio from Center-of-Light Astrometry

The Charon/Pluto mass ratio is a fundamental but poorly known parameter of the two-body system. Previous values for the mass ratio have ranged from 0.0837 plus or minus 0.0147 (Null et al., 1993, Astron. J. 105, 2319-2335) to 0.1566 plus or minus 0.0035 (Young et al., 1994, Icarus 108,186-199). We report here a new determination of the Charon/Pluto mass ratio, using five sets of groundbased images taken at four sites in support of Pluto occultation predictions. Unlike the Null et al. and Young et A determinations, where the centers of light for Pluto and Charon could be determined separately, this technique examines the motion of the center of light of the blended Pluto-Charon image. We compute the offsets of the observed center-of-light position of Pluto-Charon from the ephemeris position of the system and fit these offsets to a model of the Pluto-Charon system. The least-squares fits to the five data sets agree within their errors, and the weighted mean mass ratio is 0.117 plus or minus 0.006. The effects of errors in the Charon light fraction, semimajor axis, and ephemeris have been examined and are equal to only a small fraction of the formal error from the fit. This result is intermediate between those of Null et al., and Young et al. and matches a new value of 0.124 plus or minus 0.008 by Null and Owen (1996, Astron. J. 111, 1368-1381). The mass ratio and resulting individual masses and densities of Pluto and Charon are consistent with a collisional origin for the Pluto-Charon system.

Foust, Jeffrey A.↗