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At least 397 records · Page 22

Impact of property covariance on cluster weak lensing scaling relations

ABSTRACT We present an investigation into a hitherto unexplored systematic that affects the accuracy of galaxy cluster mass estimates with weak gravitational lensing. Specifically, we study the covariance between the weak lensing signal, ΔΣ, and the ‘true’ cluster galaxy number count, Ngal, as measured within a spherical volume that is void of projection effects. By quantifying the impact of this covariance on mass calibration, this work reveals a significant source of systematic uncertainty. Using the MDPL2 simulation with galaxies traced by the SAGE semi-analytic model, we measure the intrinsic property covariance between these observables within the three-dimensional vicinity of the cluster, spanning a range of dynamical mass and redshift values relevant for optical cluster surveys. Our results reveal a negative covariance at small radial scales (R ≲ R200c) and a null covariance at large scales (R ≳ R200c) across most mass and redshift bins. We also find that this covariance results in a $2{\!-\!}3~{{\ \rm per\ cent}}$ bias in the halo mass estimates in most bins. Furthermore, by modelling Ngal and ΔΣ as multi-(log)-linear equations of secondary halo properties, we provide a quantitative explanation for the physical origin of the negative covariance at small scales. Specifically, we demonstrate that the Ngal–ΔΣ covariance can be explained by the secondary properties of haloes that probe their formation history. We attribute the difference between our results and the positive bias seen in other works with (mock)-cluster finders to projection effects. These findings highlight the importance of accounting for the covariance between observables in cluster mass estimation, which is crucial for obtaining accurate constraints on cosmological parameters.

Astronomy & Astrophysics↗

CRAGE-mediated insertion of fluorescent chromosomal markers for accurate and scalable measurement of co-culture dynamics in Escherichia coli

Monitoring population dynamics in co-culture is necessary in engineering microbial consortia involved in distributed metabolic processes or biosensing applications. However, it remains difficult to measure strain-specific growth dynamics in high-throughput formats. This is especially vexing in plate-based functional screens leveraging whole-cell biosensors to detect specific metabolic signals. Here, we develop an experimental high-throughput co-culture system to measure and model the relationship between fluorescence and cell abundance, combining chassis-independent recombinase-assisted genome engineering (CRAGE) and whole-cell biosensing with a PemrR-green fluorescent protein (GFP) monoaromatic reporter used in plate-based functional screening. CRAGE was used to construct Escherichia coli EPI300 strains constitutively expressing red fluorescent protein (RFP) and the relationship between RFP expression and optical density (OD600) was determined throughout the EPI300 growth cycle. A linear equation describing the increase of normalized RFP fluorescence during deceleration phase was derived and used to predict biosensor strain dynamics in co-culture. Measured and predicted values were compared using flow cytometric detection methods. Induction of the biosensor lead to increased GFP fluorescence normalized to biosensor cell abundance, as expected, but a significant decrease in relative abundance of the biosensor strain in co-culture and a decrease in bulk GFP fluorescence. Taken together, these results highlight sensitivity of population dynamics to variations in metabolic activity in co-culture and the potential effect of these dynamics on the performance of functional screens in plate-based formats. The engineered strains and model used to evaluate these dynamics provide a framework for optimizing growth of synthetic co-cultures used in screening, testing and pathway engineering applications.

59 BASIC BIOLOGICAL SCIENCES↗

Alternative approach to quantum imaginary time evolution

There is increasing interest in quantum algorithms (QAs) that are based on the imaginary time evolution (ITE), a successful classical numerical approach to obtain ground states. However, most of the proposals so far require heavy postprocessing computational steps on a classical computer, such as solving linear equations. Here we provide an alternative approach to implement ITE. A key feature in our approach is the use of an orthogonal basis set: the propagated state is efficiently expressed in terms of orthogonal basis states at every step of the evolution. We argue that the number of basis states needed at those steps to achieve an accurate solution can be kept on the order of n , the number of qubits, by controlling the precision (number of significant digits) and the imaginary time increment. The number of quantum gates per imaginary time step is estimated to be polynomial in n . Additionally, while in many QAs the locality of the Hamiltonian is a key assumption, in our algorithm this restriction is not required. This characteristic of our algorithm renders it useful for studying highly nonlocal systems, such as the occupation-representation nuclear shell model. Here, we illustrate our algorithm through numerical implementation on an IBM quantum simulator.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Assessing the Feasibility of Bordered Block Diagonal Reordering in Power System Matrices using Fully Convolutional Network

In electromagnetic transient (EMT) simulations for power systems and inverter-based resources (IBRs), the arrangement of states within the system's linear equations, represented by matrix A in Ax=b, is critical. The state ordering in matrix A can highlight distinct characteristics of the system's graph, and identifying an optimal state ordering is crucial for efficient computation. The choice of state ordering, however, is dependent on the solver used, as each solver may perform optimally with different matrix patterns. With a wide array of matrix reordering algorithms available, selecting the most suitable one becomes challenging without insights into the matrix's ideal configuration. To address this, the paper proposes a fully convolutional network (FCN) to evaluate the reordering potential of the A matrix into a bordered block diagonal (BBD) pattern, which is commonly observed in power system and IBR modeling. The FCN's assessment aims to streamline the solver's operation, which in turn could substantially reduce the computational time required to find a solution.

Xia, Qianxue↗

Benchmarking Optimizers for Qumode State Preparation with Variational Quantum Algorithms

Quantum state preparation involves preparing a target state from an initial system, a process integral to applications such as quantum machine learning and solving systems of linear equations. Recently, there has been a growing interest in qumodes due to advancements in the field and their potential applications. However there is a notable gap in the literature specifically addressing this area. This paper aims to bridge this gap by providing performance benchmarks of various optimizers used in state preparation with Variational Quantum Algorithms. We conducted extensive testing across multiple scenarios, including different target states, both ideal and sampling simulations, and varying numbers of basis gate layers. Our evaluations offer insights into the complexity of learning each type of target state and demonstrate that some optimizers perform better than others in this context. Notably, the Powell optimizer was found to be exceptionally robust against sampling errors, making it a preferred choice in scenarios prone to such inaccuracies. Additionally, the Simultaneous Perturbation Stochastic Approximation optimizer was distinguished for its efficiency and ability to handle increased parameter dimensionality effectively.

Kan, Shuwen [Fordham University]↗

Finite-frequency modeling of regional tropospheric infrasound using realistic atmospheres and terrain

Infrasonic waves have been observed to propagate to regional (greater than 15 km) distances through the troposphere. Infrasound propagation in the geometric acoustics approximation has shown that realistic terrain can scatter acoustic energy from tropospheric ducts; however, ray methods cannot intrinsically capture finite-frequency behavior such as diffraction. A two-dimensional finite-difference time-domain (FDTD) method has been developed to solve linearized equations for infrasound propagation with realistic terrain. Acoustic wave propagation over 100 km with both flat terrain and a Gaussian hill was first simulated in order to compare finite-frequency propagation with ray predictions. The effects of realistic terrain and atmospheres on infrasound signals from a 2012 surface explosion at the Utah Testing and Training Range are then investigated. Propagation through the troposphere is suggested by array processing results, but eigenrays are not predicted due to weak to nonexistent ducting conditions. FDTD modeling suggests that the inclusion of terrain and finite frequency effects helps explain much of the observed signal in a realistic scenario. Furthermore, these results suggest that geometric acoustics may underestimate propagation through the troposphere, and that recorded waveforms at regional distances may be noticeably affected by terrain.

58 GEOSCIENCES↗

sta-imex (scripts to investigate stability of IMEX methods)

Set of Matlab scripts to investigate properties of IMEX time stepping methods. Scripts include discretization of a system of linearized equations. One script plots numerical dispersion against analytical dispersion of the system. Another set of scripts uses the system to break it into stiff and non stiff part to investigate stability of Implicit-Explicit Runge-Kutta methods. Scripts are based on Thuburn, J. and Woollings, T. J., Vertical Discretizations for Compressible Euler Equation Atmospheric Models Giving Optimal Representation of Normal Modes , 2005 and Lock, S.-J. and Wood, N. and Weller, H., Numerical analyses of Runge-Kutta implicit-explicit schemes for horizontally explicit, vertically implicit solutions of atmospheric models, 2014 expanding ideas from these two papers. Scripts are used to develop IMEX schemes. SAND2020-12594 M Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-NA0003525.

Guba, Oksana↗

HyKKT

HyKKT (pronounced as "hiked") is a package for solving systems of linear equations of Karush-Kuhn-Tucker (KKT) form, which typically arise in optimization problems, such as optimal power flow analysis. HyKKT uses Cholesky instead of LDL^T factorization and solves the general KKT system to a desired numerical precision via block reduction and conjugate gradient on the Schur complement. Such implementation is more suitable for implementation on graphic processing units (GPUs).

Regev, Shaked↗

OpenMxP-Opensource Mixed Precision Computing

This is an opensource library for benchmarking the system's GPU mixed precision capabilities. The software calculates solution of the system of linear equation in 64bit accuracy using mixed precision techniques and iterative refinement. Original benchmark designed is done by ICL, and it is name HPL-MxP (HPL-AI)

Lu, Hao↗

Tardigrade, Version 1.1x

Tardigrade is a collection of functions, libraries, and stand-alone code which enables the simulation of materials using the higher-order micromorphic framework. The tools present are the interface to INL's MOOSE code which is used as the underlying FEA solver, several constitutive equations (linear elasticity, a pressure-sensitive elasto-plastic model, crystal plasticity, and additional models for geo-materials) useful for demonstration purposes and the simulation of some materials, the micromorphic filter which converts DNS information to micromorphic stress-deformation quantities, and the overlap coupling framework which enables multi-scale simulations of a coupled higher-order macroscale and a classically defined microscale.

Miller, Nathan↗

Canonical and Noncanonical Hamiltonian Operator Inference

SAND2024-08577O Canonical and Noncanonical Hamiltonian Operator Inference is research code that applies old and new model reduction algorithms to well-known and publicly available "toy" problems. It applies operator inference (OpInf) methods for model reduction to several benchmark hyperbolic partial differential equations: linear wave, Korteweg-de Vries, Benjamin-Bona-Mahoney, and linear elasticity. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

SciDAC↗

Predicting ptychography probe positions using single-shot phase retrieval neural network

Ptychography is a powerful imaging technique that is used in a variety of fields, including materials science, biology, and nanotechnology. However, the accuracy of the reconstructed ptychography image is highly dependent on the accuracy of the recorded probe positions which often contain errors. These errors are typically corrected jointly with phase retrieval through numerical optimization approaches. When the error accumulates along the scan path or when the error magnitude is large, these approaches may not converge with satisfactory result. We propose a fundamentally new approach for ptychography probe position prediction for data with large position errors, where a neural network is used to make single-shot phase retrieval on individual diffraction patterns, yielding the object image at each scan point. The pairwise offsets among these images are then found using a robust image registration method, and the results are combined to yield the complete scan path by constructing and solving a linear equation. We show that our method can achieve good position prediction accuracy for data with large and accumulating errors on the order of 10 2 pixels, a magnitude that often makes optimization-based algorithms fail to converge. For ptychography instruments without sophisticated position control equipment such as interferometers, our method is of significant practical potential.

47 OTHER INSTRUMENTATION↗

Electromagnetic Waves in Cold Plasmas

A collisionless fluid model of a plasma is presented and solved to first order in the cold, high frequency limit. From this model, a homogeneous system of linear equations is obtained for a harmonic electric field perturbation from which the Appleton-Hartree equation is derived. Moreover, the polarization states of electromagnetic waves in cold, collisionless plasmas are examined. Complete sets of equations governing the reflection and transmission of electromagnetic waves in both non magnetized and magnetized plasmas are obtained. In solving the boundary problem, the Booker quartic is derived and the nature of its roots discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Basic Research Needs in Quantum Computing and Networking

Employing quantum mechanical resources in computing, information processing, and networking opens the door to potential exponential advantages over classical counterparts. However, quantifying and realizing such advantages poses extensive scientific and engineering challenges. Department of Energy (DOE) investments have driven steady progress in addressing such challenges. Recently developed quantum algorithms offer asymptotic exponential advantages in speed or accuracy for fundamental scientific problems. These problems include simulating physical systems, solving systems of linear equations, differential equations, and optimization problems. Empirical demonstrations on nascent quantum hardware suggest better performance on contrived computational tasks than classical analogs. However, the requirements for a quantum computer or network to demonstrate an end-to-end rigorously quantifiable performance improvement over classical analogs remains a grand challenge, especially for problems of practical value. In particular, what will be required for quantum technology to ultimately exhibit scalable, rigorous, and transformative performance advantages for practical applications? In July 2023, DOE’s Advanced Scientific Computing Research program in the Office of Science convened the Workshop on Basic Research Needs in Quantum Computing and Networking, where major opportunities and grand challenges were identified. The following five priority research directions (PRDs) were identified as a result of the workshop.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Report for the ASCR Workshop on Basic Research Needs in Quantum Computing and Networking - 2023

Employing quantum mechanical resources in computing and networking opens the door to new computation and communication models and potential disruptive advantages over classical counterparts. However, quantifying and realizing such advantages face extensive scientific and engineering challenges. Investments by the Department of Energy (DOE) have driven progress toward addressing such challenges. Quantum algorithms have been recently developed, in some cases offering asymptotic exponential advantages in speed or accuracy, for fundamental scientific problems such as simulating physical systems, solving systems of linear equations, or solving differential equations. Empirical demonstrations on nascent quantum hardware suggest better performance than classical analogs on specialized computational tasks favorable to the quantum computing systems. However, demonstration of an end-to-end, substantial and rigorously quantifiable quantum performance advantage over classical analogs remains a grand challenge, especially for problems of practical value. The definition of requirements for quantum technologies to exhibit scalable, rigorous, and transformative performance advantages for practical applications also remains an outstanding open question, namely, what will be required to ultimately demonstrate practical quantum advantage?

97 MATHEMATICS AND COMPUTING↗

Report for the ASCR Workshop on Basic Research Needs in Quantum Computing and Networking - 2023

Employing quantum mechanical resources in computing and networking opens the door to new computation and communication models and potential disruptive advantages over classical counterparts. However, quantifying and realizing such advantages face extensive scientific and engineering challenges. Investments by the Department of Energy (DOE) have driven progress toward addressing such challenges. Quantum algorithms have been recently developed, in some cases offering asymptotic exponential advantages in speed or accuracy, for fundamental scientific problems such as simulating physical systems, solving systems of linear equations, or solving differential equations. Empirical demonstrations on nascent quantum hardware suggest better performance than classical analogs on specialized computational tasks favorable to the quantum computing systems. However, demonstration of an end-to-end, substantial and rigorously quantifiable quantum performance advantage over classical analogs remains a grand challenge, especially for problems of practical value. The definition of requirements for quantum technologies to exhibit scalable, rigorous, and transformative performance advantages for practical applications also remains an outstanding open question, namely, what will be required to ultimately demonstrate practical quantum advantage?

97 MATHEMATICS AND COMPUTING↗

Crustal Scale Travel Time Prediction with the SALSA3D Framework and Machine Learning

The SALSA3D project aims to improve our models used in travel time prediction. The current version uses tomographic modeling for propagation through the Earth’s mantle because of the large number (order of millions) of observations of seismic phases which primarily traverse the Earth’s mantle and the ability to pose the travel time problem as a set of linear equations. However, all seismic rays traverse the crust to reach receivers at the surface and therefore models of propagation through the crust are required. Therefore, the primary motivation for this study is to explore how to increase the scope of the SALSA3D project to phases which travel primarily through the crust. In this report, we evaluate new, machine learning based and physics-based methods to model these travel times for integration into the SALSA3D framework. Our results suggest that using our existing physics-based travel time tomography method is a viable approach for the regional to global scale, but better predictive capabilities can be achieved through a neural network trained on the region of interest for near-regional offsets. We suggest future iterations of SALSA3D should incorporate machine learning tools such as Physics-Informed Neural Networks or Bayesian Neural Networks.

58 GEOSCIENCES↗

Proceedings for the Workshop on Applied Nuclear Data Activities 2024

The Workshop for Applied Nuclear Data Activities (WANDA) is designed to increase communication among nuclear data (ND) users in multidisciplinary federal programs, ND producers, ND funders, and other ND experts. It also presents an opportunity to cross-pollinate ideas as well as introduce ND gaps identified by federal programs to ND experts and ND capabilities to the various federal ND users. WANDA 2024 included five technical sessions, three of which focused on Fusion Energy Sciences (FES)—FES Fusion Neutronics, FES Tritium Production, and FES Material Damage—and two stand-alone sessions—Isotopes and Targetry for Nuclear Data and Uncertainty Quantification. The FES sessions successfully brought new voices to the WANDA discussions, expanding the application space in which nuclear data are critical. FES programs need accurate nuclear data with realistic uncertainty quantification to properly estimate, for example, shielding, activation, tritium production, helium production, structural material integrity, and superconducting magnet operation. This includes a variety of projectile (neutrons, photons, charged particles) and target atoms. One of the action items common to all the FES sessions was a need to perform sensitivity studies to identify the prioritization of nuclear data needs. The Isotopes and Targetry session highlighted the many capabilities available to produce high-quality targets for nuclear data measurements, including 3D printing with spherical powders, combustion synthesis coupled with spin coating & electrospraying, inkjet printing, and isotopic doping. These new methods open doors for more accurate measurement, but it was also stressed that sample characterization following any method of fabrication is of the highest importance to accurately interpret nuclear data measurement results that used that sample. The Uncertainty Quantification (UQ) session was broken into two categories: nuclear data uncertainty quantification and the use of that uncertainty quantification. Thematic to the UQ session was the loss of information when going from nuclear data measurement, to evaluation, to evaluated file, and finally to neutron transport calculations. Current evaluated ND libraries typically only contain covariances, which assume that the probability distributions are Gaussian. Beyond being a simplified assumption for many evaluations, this can lead to negative values on many observables when attempting to sample the covariance. The covariance format, however, is very efficient in that a simple set of linear equations can transform uncertainty from parameters or cross sections to the application of interest. Focused collaboration is needed between nuclear data evaluators and nuclear data users to ensure that needs are being met.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗