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At least 397 records · Page 22

Using a Coarse-Grained Modeling Framework to Identify Oligomeric Motifs with Tunable Secondary Structure

Coarse-grained modeling can be used to explore general theories that are independent of specific chemical detail. In this paper, we present cg_openmm, a Python-based simulation framework for modeling coarse-grained hetero-oligomers and screening them for structural and thermodynamic characteristics of cooperative secondary structures. cg_openmm facilitates the building of coarse-grained topology and random starting configurations, setup of GPU-accelerated replica exchange molecular dynamics simulations with the OpenMM software package, and features a suite of postprocessing thermodynamic and structural analysis tools. In particular, native contact analysis, heat capacity calculations, and free energy of folding calculations are used to identify and characterize cooperative folding transitions and stable secondary structures. In this work, we demonstrate the capabilities of cg_openmm on a simple 1–1 Lennard-Jones coarse-grained model, in which each residue contains 1 backbone and 1 side-chain bead. By scanning both nonbonded and bonded force-field parameter spaces at the coarse-grained level, we identify and characterize sets of parameters which result in the formation of stable helices through cooperative folding transitions. Furthermore, we show that the geometries and stabilities of these helices can be tuned by manipulating the force-field parameters.

36 MATERIALS SCIENCE↗

Importance of Spatially Continuous Urban Surface Properties in Urban‐Resolving Earth System Modeling

Accurate representation of urban properties and processes at higher resolutions in global modeling systems is essential for advancing our ability to capture the complexities of urban systems and informing effective resilience strategies. However, the prescription of coarse global-scale urban properties in most state-of-the-art Earth system models (ESMs) is limiting their potential for capturing urban signals as they advance toward kilometer-scale simulation capabilities. To bridge this gap in inadequate urban property representation and to advance urban-resolving Earth system modeling, this work integrates the newly-developed global 1 km-resolution facet-level urban surface property data set, U-Surf, into the land component of Community Earth System Model (CESM)—Community Terrestrial System Model (CTSM). The land-only CTSM simulations are validated against satellite measurements, ground-based urban weather stations, flux tower observations, and reanalysis data. Results demonstrate that the enhanced urban properties allow improved simulations of urban meteorology and surface energy fluxes compared to the default coarse-resolution categorical urban canopy parameters. Spatial scaling analysis reveals regime-dependent information loss during resolution aggregation, as well as substantial scale-dependent variations in urban surface energy flux representation. Furthermore, these findings have critical implications for coupled Earth system modeling when including the effect of land-atmosphere interaction. This work establishes a foundation for future urban-resolving kilometer-scale ESM development, which will enable systematic intra- and inter-city comparisons that inform urban adaptation strategies across diverse global urban environments.

Cheng, Yifan [University of Illinois Urbana-Champa↗

Sedimentation and Nonlinear Trapping in Texas Reservoirs Identified Using Remote Sensing and Bathymetric Survey Records

Decreasing reservoir storage capacity due to sedimentation poses great challenges to aging U.S. reservoirs, as it reduces the efficacy and reliability of their socio‐economic services. However, systematic assessments of reservoir sedimentation rates and associated issues remain limited because of sparse and infrequent bathymetry survey data. In this study, we use remote sensing‐driven estimates of sediment concentrations to identify regions experiencing rapid reservoir capacity loss, as observed in repeated bathymetry surveys. Our analysis focuses on Texas, where one of the most reliable state‐level reservoir capacity loss data sets is available through a unique long‐term monitoring program by the Texas Water Development Board. We find that reservoirs with large storage capacities and high sedimentation rate are concentrated in Northeast Texas. We also show that reduced forest, increased barren land, and erosive soil properties are co‐varying with high reservoir sedimentation rates. Temporal changes in the longitudinal gradient of the remotely sensed sediment flux highlight the nonlinear nature of sediment trapping processes, and can be used to estimate the reservoir storage capacity loss over time. In combination with standard bathymetry surveys, our approach shows potential for more cost‐effective and frequent assessment of reservoir storage loss.

Lee, Jiyong [ORNL] (ORCID:0000000198957406)↗

Infrared spectroscopy of the syn -methyl-substituted Criegee intermediate: A combined experimental and theoretical study

An IR–vacuum ultraviolet (VUV) ion-dip spectroscopy method is utilized to examine the IR spectrum of acetaldehyde oxide (CH3CHOO) in the overtone CH stretch (2νCH) spectral region. IR activation creates a depletion of the ground state population that reduces the VUV photoionization signal on the parent mass channel. IR activation of the more stable and populated syn-CH3CHOO conformer results in rapid unimolecular decay to OH + vinoxy products and makes the most significant contribution to the observed spectrum. The resultant IR–VUV ion-dip spectrum of CH3CHOO is similar to that obtained previously for syn-CH3CHOO using IR action spectroscopy with UV laser-induced fluorescence detection of OH products. The prominent IR features at 5984 and 6081 cm−1 are also observed using UV + VUV photoionization of OH products. Complementary theoretical calculations utilizing a general implementation of second-order vibrational perturbation theory provide new insights on the vibrational transitions that give rise to the experimental spectrum in the overtone CH stretch region. The introduction of physically motivated small shifts of the harmonic frequencies yields remarkably improved agreement between experiment and theory in the overtone CH stretch region. The prominent features are assigned as highly mixed states with contributions from two quanta of CH stretch and/or a combination of CH stretch with an overtone in mode 4. The generality of this approach is demonstrated by applying it to three different levels of electronic structure theory/basis sets, all of which provide spectra that are virtually indistinguishable despite showing large deviations prior to introducing the shifts to the harmonic frequencies.

Chemistry↗

High-impact innovations for high-salinity membrane desalination

Significance Researchers lack the tools for quantitatively evaluating the impact of their research on technology costs, especially when those technologies comprise multiple components or when the component costs are highly uncertain. We propose a suite of tools to aid in evaluating technology platforms, setting system- and component-level research targets and identifying high-impact innovation trajectories. These tools are applicable to any technology composed of multiple components whose performance or cost will benefit from innovation, but they are especially valuable for membrane systems in which the high interdependence in components amplifies or dampens the effects of innovation in nonintuitive ways.

Dudchenko, Alexander V.↗

Electron doping of a double-perovskite flat-band system

Electronic structure calculations indicate that the Sr 2 FeSbO 6 double perovskite has a flat-band set just above the Fermi level that includes contributions from ordinary subbands with weak kinetic electron hopping plus a flat subband that can be attributed to the lattice geometry and orbital interference. To place the Fermi energy in that flat band, electron-doped samples with formulas Sr 2- x La x FeSbO 6 (0 ≤ x ≤ 0.3) were synthesized, and their magnetism and ambient temperature crystal structures were determined by high-resolution synchrotron X-ray powder diffraction. All materials appear to display an antiferromagnetic-like maximum in the magnetic susceptibility, but the dominant spin coupling evolves from antiferromagnetic to ferromagnetic on electron doping. Which of the three subbands or combinations is responsible for the behavior has not been determined.

Science & Technology - Other Topics↗

Fermionic quantum processing with programmable neutral atom arrays

Simulating the properties of many-body fermionic systems is an outstanding computational challenge relevant to material science, quantum chemistry, and particle physics.-5.4pc]Please note that the spelling of the following author names in the manuscript differs from the spelling provided in the article metadata: D. González-Cuadra, D. Bluvstein, M. Kalinowski, R. Kaubruegger, N. Maskara, P. Naldesi, T. V. Zache, A. M. Kaufman, M. D. Lukin, H. Pichler, B. Vermersch, Jun Ye, and P. Zoller. The spelling provided in the manuscript has been retained; please confirm. Although qubit-based quantum computers can potentially tackle this problem more efficiently than classical devices, encoding nonlocal fermionic statistics introduces an overhead in the required resources, limiting their applicability on near-term architectures. In this work, we present a fermionic quantum processor, where fermionic models are locally encoded in a fermionic register and simulated in a hardware-efficient manner using fermionic gates. We consider in particular fermionic atoms in programmable tweezer arrays and develop different protocols to implement nonlocal gates, guaranteeing Fermi statistics at the hardware level. We use this gate set, together with Rydberg-mediated interaction gates, to find efficient circuit decompositions for digital and variational quantum simulation algorithms, illustrated here for molecular energy estimation. Finally, we consider a combined fermion-qubit architecture, where both the motional and internal degrees of freedom of the atoms are harnessed to efficiently implement quantum phase estimation as well as to simulate lattice gauge theory dynamics.

74 ATOMIC AND MOLECULAR PHYSICS↗

Tomographic constraints on gravity from angular redshift fluctuations in the late Universe

Fluctuations in sky maps of galaxy redshifts, dubbed angular redshift fluctuations (ARF), contain precise information about the growth rate of structures and the nature of gravity in the Universe. Specifically, ARFs constrain the combination of cosmological parameters H/H 0 fσ 8 (z), while being an intrinsically tomographic probe and largely insensitive to many observational systematic errors, all without requiring the assumption of any redshift-to-distance relation under a given fiducial cosmology. We present the first cosmological constraints derived from ARF by using Baryon Oscillation Spectroscopic Survey (BOSS) LOWZ(Low redshift(Z))+CMASS(Constant MASS) DR12(Data Release 12) galaxy samples, obtaining 7 per cent accurate constraints on H/H 0 fσ 8 (z) at more than 20 redshifts over the range z ϵ [0.26, 0.72]. Our best-fitting value is 10 per cent larger, but compatible at the 1.4σ level, than the ΛCDM expectation set by Planck observations of cosmic microwave background (CMB) radiation. In conclusion, our tomographic measurements, combined with these CMB data, provide one of the strongest constraints on the gravity index γ, $\gamma =0.44^{+0.09}_{-0.07}$, which lies within 2σ of the prediction of General Relativity (γGR ≃ 0.55).

79 ASTRONOMY AND ASTROPHYSICS↗

Search for D 0 → K S 0 K − e + ν e , D + → K S 0 K S 0 e + ν e , and D + → K + K − e + ν e

A search has been performed for the semileptonic decays D 0 → K S 0 K − e + ν e , D + → K S 0 K S 0 e + ν e , and D + → K + K − e + ν e , using 7.9 fb − 1 of e + e − annihilation data collected at the center-of-mass energy s = 3.773 GeV by the BESIII detector operating at the BEPCII collider. No significant signals are observed, and upper limits are set at the 90% confidence level of 2.13 × 10 − 5 , 1.54 × 10 − 5 , and 2.10 × 10 − 5 for the branching fractions of D 0 → K S 0 K − e + ν e , D + → K S 0 K S 0 e + ν e , and D + → K + K − e + ν e , respectively. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Search for the nonresonant production of Higgs boson pairs via gluon fusion and vector-boson fusion in the $b\bar{b}$τ + τ – final state in proton-proton collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

A search for the nonresonant production of Higgs boson pairs in the HH → $b\overline{b}$$\tau^{+}\tau^{-}$ channel is performed using 140 fb -1 of proton-proton collisions at a center-of-mass energy of 13 TeV recorded by the ATLAS detector at the CERN Large Hadron Collider. The analysis strategy is optimized to probe anomalous values of the Higgs boson self-coupling modifier $\kappa_{\tau}$ and of the quartic HHVV (v = W,Z) coupling modifier $\kappa$ 2⁢V . No significant excess above the expected background from Standard Model processes is observed. An observed (expected) upper limit μ HH < 5.9⁢(3.3) is set at 95% confidence-level on the Higgs boson pair production cross section normalized to its Standard Model prediction. The coupling modifiers are constrained to an observed (expected) 95% confidence interval of -3.1 <$\kappa_{\tau}$ < 9.0 (-2.5 < $\kappa_{\tau}$ < 9.3) and -0.5 <$\kappa$ 2⁢V < 2.7 (-0.2 <$\kappa$ 2⁢V < 2.4), assuming all other Higgs boson couplings are fixed to the Standard Model prediction. The results are also interpreted in the context of effective field theories via constraints on anomalous Higgs boson couplings and Higgs boson pair production cross sections assuming different kinematic benchmark scenarios.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Neutrino charge radius and additional one-loop radiative corrections at ultranear reactor experiments

We scrutinize the potential of upcoming ultranear reactor neutrino experiments to detect radiative corrections in the elastic neutrino-electron scattering channel, focusing on the JUNO-TAO and CLOUD detectors, which employ advanced scintillator detection technologies. Previous reactor experiments have already constrained the electron neutrino charge radius, which is a neutrino property associated with a certain subset of the total radiative corrections, and have achieved limits that are only about an order of magnitude away from the Standard Model prediction. Our study demonstrates that JUNO-TAO and CLOUD could discover the neutrino charge radius in the near future, considering the established treatment of the charge radius. However, we show that it is necessary to go beyond this standard treatment. By including the complete set of one-loop level radiative corrections, we find a partial cancellation with the charge radius effect, reducing the experimental sensitivity to this quantity. Nevertheless, JUNO-TAO and CLOUD still have the potential to achieve a 5 σ discovery but over longer timescales within a reasonable operational time frame. Published by the American Physical Society 2024

Brdar, Vedran (ORCID:0000000170275104)↗

Search for triple Higgs boson production in the 6⁢𝑏 final state using 𝑝⁢𝑝 collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

A search for the production of three Higgs bosons (𝐻⁡𝐻⁡𝐻) in the $b\bar{b}b\bar{b}b\bar{b}$ final state is presented. The search uses 126 fb −1 of proton-proton collision data at $\sqrt{s}$ =13 TeV collected with the ATLAS detector at the Large Hadron Collider. The analysis targets both nonresonant and resonant production of 𝐻⁡𝐻⁡𝐻. The resonant interpretations primarily consider a cascade decay topology of 𝑋 →𝑆⁢𝐻 → 𝐻⁡𝐻⁡𝐻 with masses of the new scalars 𝑋 and 𝑆 up to 1.5 and 1 TeV, respectively. In addition to scenarios where 𝑆 is off-shell, the nonresonant interpretation includes a search for Standard Model 𝐻⁡𝐻⁡𝐻 production, with limits on the trilinear and quartic Higgs self-coupling set. No evidence for 𝐻⁡𝐻⁡𝐻 production is observed. An upper limit of 59 fb is set, at the 95% confidence level, on the cross section for Standard Model 𝐻⁡𝐻⁡𝐻 production.

Artificial neural networks↗

Combination of Searches for Resonant Higgs Boson Pair Production Using p p Collisions at s = 13 TeV with the ATLAS Detector

A combination of searches for a new resonance decaying into a Higgs boson pair is presented, using up to 139 fb − 1 of p p collision data at s = 13 TeV recorded with the ATLAS detector at the LHC. The combination includes searches performed in three decay channels: b b ¯ b b ¯ , b b ¯ τ + τ − , and b b ¯ γ γ . No excess above the expected Standard Model background is observed and upper limits are set at the 95% confidence level on the production cross section of Higgs boson pairs originating from the decay of a narrow scalar resonance with mass in the range 251 GeV–5 TeV. The observed (expected) limits are in the range 0.96–600 fb (1.2–390 fb). The limits are interpreted in the type-I two-Higgs-doublet model and the minimal supersymmetric standard model, and constrain parameter space not previously excluded by other searches. © 2024 CERN, for the ATLAS Collaboration 2024 CERN

Aad, G. (ORCID:0000000266654934)↗

Search for Baryon-Number-Violating Processes in B − Decays to the Ξ ¯ c 0 Λ ¯ c − Final State

We report the results of the first search for B − decays to the Ξ ¯ c 0 Λ ¯ c − final state using 711 fb − 1 of data collected at the ϒ ( 4 S ) resonance with the Belle detector at the KEKB asymmetric-energy e + e − collider. The results are interpreted in terms of both direct baryon-number-violating B − decay and Ξ c 0 − Ξ ¯ c 0 oscillations which follow the standard model decay B − → Ξ c 0 Λ ¯ c − . We observe no evidence for baryon number violation and set the 95% confidence-level upper limits on the ratio of baryon-number-violating and standard model branching fractions B ( B − → Ξ ¯ c 0 Λ ¯ c − ) / B ( B − → Ξ c 0 Λ ¯ c − ) to be < 2.7 % and on the effective angular frequency of mixing ω in Ξ c 0 − Ξ ¯ c 0 oscillations to be < 0.76 ps − 1 (equivalent to τ mix > 1.3 ps ). Published by the American Physical Society 2024

Physics↗

Quantitative Prediction of Perovskite Stability Using Accelerated Testing and Machine Learning

PV technologies based on hybrid perovskites offer the potential for reducing solar cell costs, but they are particularly vulnerable to degradation by environmental factors such as moisture, oxygen, and illumination. Commercialization will require not only stable materials and device architectures but also accelerated testing protocols and models that can predict degradation from the accelerated testing data. Here, we report results from in situ photoluminescence (PL) and photoconductivity (PC) measurements during perovskite degradation with simultaneous optical transmittance (Tr) measurements or reflected dark field (DF) imaging. From PL, PC, Tr, and DF, we determine (respectively) the steady-state quasi-Fermi level splitting, the mean effective carrier diffusion length, the extent of conversion of perovskite to higher bandgap degradation products, and the extent of scattering from domains with different orientation or composition, all as a function of time during degradation. Simultaneous measurement of PL-PC-Tr or PL-PC-DF on perovskite absorbers in an environmental chamber over a wide range of humidity, oxygen, temperature, and illumination levels yields a rich data set. We use machine learning to develop a model that accurately predicts (within 10%) the time for the diffusion length to decrease to 85% of its initial value. The model takes the environmental conditions and the first few measurements from the PL-PC-Tr or PL-PC-DF experiment as input. Thus, the model provides a framework to interpret the results of accelerated testing of absorber materials. One of the dominant features in the model of degradation for CH 3 NH 3 PbI 3 is the initial rate at which transmittance increase. For devices with opaque contacts, the pixel-averaged rate of change of the intensity in dark-field images can be used in place of transmittance. Results are also presented on full PV devices with in-situ current-voltage (JV) measurements. Here, the data from simultaneous PL-DF-JV under environmental stresses reveal intimate connection between degradation and shunts and provide a framework to extend accelerated testing to devices. Further, the presentation reveals underlying universal behavior in degradation pathways over a broad range of environmental stresses and perovskite compositions.

14 SOLAR ENERGY↗

Multiclass Classification Using Bayesian Multivariate Adaptive Regression Splines

We present a new Bayesian model for the problem of multiclass classification. In this model, the probabilities of class membership of a given observation are determined by the mean of a latent Gaussian distribution. The mean functions of this latent distribution consist of combinations of highly flexible basis functions of the inputs: multivariate adaptive regression splines (MARS), first developed for multiple regression. We use reversible jump Markov chain Monte Carlo to make inference on the classification model, including the number of basis functions. We compare the probabilistic classification performance of our proposed approach to existing methods on simulated and benchmark data, and compare uncertainty estimates on simulated data. Our proposed method compares favorably with existing Bayesian and frequentist multiclass classification methods in out-of-sample probabilistic classification, and uncertainty estimation of these probabilistic classifications. We examine the fit of the proposed method to a data set of hurricane storm surge levels near Delaware Bay, US, and conclude that sea level rise is a key contributor to damage delivered by storm surge.

97 MATHEMATICS AND COMPUTING↗

Understanding Structures of Cyber Competition in an Era of Major Power Rivalry

Over the past two decades, the cyber domain has emerged and evolved into a key strategic domain for nations across the globe. Security strategies are espoused by heads of state that focus on how to manage the increasingly enormous, crosscutting impact that the cyber domain has on national security across economic, military, intelligence, intellectual property, and countless other facets. These strategies frequently evolve, and even change entirely, as leaders adapt to new technologies and administrations change. Even if these strategies did not change at all, they would take inordinate amounts of time to effectively implement within the organizational structures of government. The time required to go from setting department and agency-level goals, to the time small teams have well-oiled processes and expertise to accomplish tactical objectives that meet the strategic vision is lengthy. With near certainty, by the time objectives and vision are implemented, the landscape, strategy, or both has changed entirely. While this churn will likely never cease due to the rapidly changing nature of the cyber domain, this problem raises an important question: can governmental structures be organized to rapidly adapt to changing cyber strategies? As offices responsible for particular missions in cyberspace shuffle about within the bureaucracy, are technical capabilities enabled or enhanced? No matter how advanced a particular technical capability is or how adept the staff is at solving problems, they will be ineffective if placed haphazardly within the organization: the right authorities may not exist for their office, the correct lines of interpersonal communication may not be established properly, or insufficient resources have not been allocated to effectively deploy a brilliant technical solution. This concept of organizational agility in the context of national cyber capabilities is important when taking into account the National Defense Strategy’s emphasis on cyber capability and the ability of the United States to compete and rapidly adapt to new challenges posed by rivals. As a nation, we are at a point where technology evolves rapidly enough to warrant thoughtful and nimble changes to the bureaucratic structures that support how cyber operations are carried out. Taking these questions and cross-comparing them to the organizational structures across China, Russia, and the United States provides for an interesting thought experiment. As non-democratic regimes, China and Russia have differing priorities and internal power dynamics than the United States and thus organize their governments differently. By combining known and broadcasted strategies of these nations with the observed technical capabilities demonstrated in the public domain, we can begin to see how organizational structures map to strategic goals and directly enable technical capabilities. Insight can be gained by introducing organizational structures into traditional analysis focusing solely around strategies and capabilities; additionally, otherwise unknown capabilities or intents might be discovered or inferred by analyzing organizational structures alone. Analyzing cyber operations from this oft-overlooked perspective could potentially provide useful insight and more concrete actions that can be undertaken to realize the National Defense Strategy’s goals.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Effects of fine-root senescence upon soil communities and nutrient flux into soil pools (Final Report)

Fine roots represent an important flux of carbon into terrestrial soils. Much of this flux occurs through the exudation of polysaccharides and other carbon compounds during the lifetime of fine-roots, but little is known about their contributions to flux as roots senesce, die and decompose. This project was designed 1) to test approaches for inducing senescence in fine roots and 2) assess the effects of the treatments on fine roots and the associated rhizosphere community. We implemented two fine-root treatments, a steam girdling approach and full severing of fine root modules from the tree, and we contrasted them with a control where roots were handled but not girdled. Fine roots and their associated community subjected to each of these three treatments were subsequently analyzed for changes in physical structure, nutrient content, community structure and gene function. Both girdling manipulations resulted in tissue disruption in fine roots and changes in the soil community relative to controls. In particular, microbial diversity for most taxa declined in girdled treatments whereas fungal diversity increased. We also observed changes in overall plant and fungal gene expression associated with treatment with plant gene expression declining over time in girdled roots with a simultaneous increase in fungal gene expression in these same treatments. Finally, in girdled fine root modules, we observed changes in gene function associated with senescence and plant stress in pine-associated genes while at the same time observing upregulation of genes associated with growth and proliferation in fungi. In conclusion, we were able to successfully girdle fine-roots in a field setting and resolve plant-level and community level changes in response to these girdling treatments.

54 ENVIRONMENTAL SCIENCES↗