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At least 397 records · Page 22

The NASA Open Science Data Repository: Biomedical Fair Data, Analysis Tools, User Communities, Publications, and Discoveries for Deep Space Missions

Increased biomedical risks and challenges associated with deep space missions require new knowledge discovery, new health countermeasures, and development of novel ecosystems, life support, crop production, and biomedical support capabilities. To meet NASA’s Moon to Mars strategic program goals for Human and Biological Sciences, findable, accessible, interoperable, reusable (FAIR), and maximally open-access data is going to be required to enable humanity to thrive in deep space. Indeed, this cornerstone perspective on FAIR and maximally open access data was also recommended in the recent 2023-2032 Decadal Survey from the National Academies of Sciences, Engineering, and Medicine. The NASA Open Science Data Repository (OSDR) is a maximally open access and FAIR database, and meets various scientific, technical, and operational spaceflight needs. It offers public users and submitters the ability to upload, download, search, share, analyze, and visualize data across ‘omics, physiological, phenotypic, behavioral, bioimaging, video, and environmental monitoring telemetry datasets. OSDR includes NASA GeneLab, NASA Ames Life Sciences Data Archive, and the NASA Biological Institutional Scientific Collection. OSDR has >455 studies with datasets from model organisms and non-NASA human astronauts. There are ~12 datasets from the Inspiration 4 (I4) mission, spanning metagenomics, comprehensive metabolic panels, clonal hematopoiesis, spatial transcriptomics, proteomics, and cytokine panels. In the interest of data privacy, two I4 datasets have raw FASTQ and FASTA files relating to the epitranscriptome, and a new request feature is live in OSDR (with a backend review process established) which was developed based on industry norms. OSDR also recently began a collaboration with the European Space Agency (ESA) to scientifically curate and make available >200 terabytes of human and model organism space-relevant data. The OSDR submission portal is designed to ingest and curate ~25 ‘omics assay data types, and ~50 physiological-phenotypic-imaging assay data types, spanning ultrasonography, micro-computed tomography, histology, morphometric photography, rebound tonometry, gait analysis, optical coherence tomography, novel object recognition, flow cytometry, and immunohistochemistry. A suite of analysis tools are available for OSDR users including: 1) an Environmental Data Application to compare radiation, CO2, relative humidity, temperature, and other telemetry across missions and subjects, 2) the RadLab database, a collaboration between NASA, ESA, the German and Italian Space Agencies, and the Bulgarian Academy of Sciences, which compiles radiation measurements relevant to human spaceflight and provides tools for accessing and manipulating the data, and 3) a Multi-study visualization tool which enables users to look across and combine GeneLab’s omics datasets across different experiments and missions. There are ~600 volunteer OSDR Analysis Working Group (AWG) members who: 1) provide feedback on scientific standards for reuse (subject and assay metadata; processing pipelines; dataset formats and uniformed structures for machine-readability), and 2) collaborate to mine-reuse OSDR data conducting scientific analysis. OSDR has enabled 60 publications as of September 2023, many directly from AWG collaborations most notably the Cell Press package in 2020. Lastly, there are at least 15 articles which mine OSDR data part of a package of ~50 articles across Nature Portfolio with research stemming from I4, the Japan Aerospace Exploration Agency, NASA Space Biology, and the NASA Human Research Program.

space biology↗

NASA Open Science Data Repository: Biomedical FAIR Data, Analysis Tools, User Communities, and Discoveries for Deep Space Missions

Increased biomedical risks and challenges associated with deep space missions require new knowledge discovery, new health countermeasures, and development of novel ecosystems, life support, crop production, and biomedical support capabilities. To meet NASA’s Moon to Mars strategic program goals for Human and Biological Sciences, findable, accessible, interoperable, reusable (FAIR), and maximally open-access data is going to be required to enable humanity to thrive in deep space. Indeed, this cornerstone perspective on FAIR and maximally open access data was also recommended in the recent 2023-2032 Decadal Survey from the National Academies of Sciences, Engineering, and Medicine. The NASA Open Science Data Repository (OSDR) is a maximally open access and FAIR database, and meets various scientific, technical, and operational spaceflight needs. It offers public users and submitters the ability to upload, download, search, share, analyze, and visualize data across ‘omics, physiological, phenotypic, behavioral, bioimaging, video, and environmental monitoring telemetry datasets. OSDR includes NASA GeneLab, NASA Ames Life Sciences Data Archive, and the NASA Biological Institutional Scientific Collection. OSDR has >455 studies with datasets from model organisms and non-NASA human astronauts. There are ~12 datasets from the Inspiration 4 (I4) mission, spanning metagenomics, comprehensive metabolic panels, clonal hematopoiesis, spatial transcriptomics, proteomics, and cytokine panels. In the interest of data privacy, two I4 datasets have raw FASTQ and FASTA files relating to the epitranscriptome, and a new request feature is live in OSDR (with a backend review process established) which was developed based on industry norms. OSDR also recently began a collaboration with the European Space Agency (ESA) to scientifically curate and make available >200 terabytes of human and model organism space-relevant data. The OSDR submission portal is designed to ingest and curate ~25 ‘omics assay data types, and ~50 physiological-phenotypic-imaging assay data types, spanning ultrasonography, micro-computed tomography, histology, morphometric photography, rebound tonometry, gait analysis, optical coherence tomography, novel object recognition, flow cytometry, and immunohistochemistry. A suite of analysis tools are available for OSDR users including: 1) an Environmental Data Application to compare radiation, CO2, relative humidity, temperature, and other telemetry across missions and subjects, 2) the RadLab database, a collaboration between NASA, ESA, the German and Italian Space Agencies, and the Bulgarian Academy of Sciences, which compiles radiation measurements relevant to human spaceflight and provides tools for accessing and manipulating the data, and 3) a Multi-study visualization tool which enables users to look across and combine GeneLab’s omics datasets across different experiments and missions. There are ~600 volunteer OSDR Analysis Working Group (AWG) members who: 1) provide feedback on scientific standards for reuse (subject and assay metadata; processing pipelines; dataset formats and uniformed structures for machine-readability), and 2) collaborate to mine-reuse OSDR data conducting scientific analysis. OSDR has enabled 60 publications as of September 2023, many directly from AWG collaborations most notably the Cell Press package in 2020. Lastly, there are at least 15 articles which mine OSDR data part of a package of ~50 articles across Nature Portfolio with research stemming from I4, the Japan Aerospace Exploration Agency, NASA Space Biology, and the NASA Human Research Program.

open access↗

Optical recognition of statistical patterns

Optical implementation of the Fukunaga-Koontz transform (FKT) and the Least-Squares Linear Mapping Technique (LSLMT) is described. The FKT is a linear transformation which performs image feature extraction for a two-class image classification problem. The LSLMT performs a transform from large dimensional feature space to small dimensional decision space for separating multiple image classes by maximizing the interclass differences while minimizing the intraclass variations. The FKT and the LSLMT were optically implemented by utilizing a coded phase optical processor. The transform was used for classifying birds and fish. After the F-K basis functions were calculated, those most useful for classification were incorporated into a computer generated hologram. The output of the optical processor, consisting of the squared magnitude of the F-K coefficients, was detected by a T.V. camera, digitized, and fed into a micro-computer for classification. A simple linear classifier based on only two F-K coefficients was able to separate the images into two classes, indicating that the F-K transform had chosen good features. Two advantages of optically implementing the FKT and LSLMT are parallel and real time processing.

Lee, S. H.↗

Systolic Processor Array For Recognition Of Spectra

Spectral signatures of materials detected and identified quickly. Spectral Analysis Systolic Processor Array (SPA2) relatively inexpensive and satisfies need to analyze large, complex volume of multispectral data generated by imaging spectrometers to extract desired information: computational performance needed to do this in real time exceeds that of current supercomputers. Locates highly similar segments or contiguous subsegments in two different spectra at time. Compares sampled spectra from instruments with data base of spectral signatures of known materials. Computes and reports scores that express degrees of similarity between sampled and data-base spectra.

Chow, Edward T.↗

Large-memory real-time multichannel multiplexed pattern recognition

The principle and experimental design of a real-time multichannel multiplexed optical pattern recognition system via use of a 25-focus dichromated gelatin holographic lens (hololens) are described. Each of the 25 foci of the hololens may have a storage and matched filtering capability approaching that of a single-lens correlator. If the space-bandwidth product of an input image is limited, as is true in most practical cases, the 25-focus hololens system has 25 times the capability of a single lens. Experimental results have shown that the interfilter noise is not serious. The system has already demonstrated the storage and recognition of over 70 matched filters - which is a larger capacity than any optical pattern recognition system reported to date.

Gregory, D. A.↗

Overview of the earth resources program of the Jet Propulsion Laboratory

Proposed is an investigation to develop and correlate remote sensing from satellites and aircraft into an effective prototype system for California statewide water quality surveillance. Aircraft overflights, computer enhanced recognition of pollution signatures, ground truth measurements, and data processing will be employed to develop a simplified and automated monitoring system. ERTS A image data will be used for nine major drainage basins of California having unique water quality influences from waste discharges, thermal contributions, oil spills, turbidity, sea water intrusion, agricultural drainage, toxicity, biostimulation, and eutrophication.

Burcham, D. P.↗

Geographic science

The use of multispectral imaging systems in land use, geomorphological, and cartographic applications is examined. Spatial, spectral, and geometric resolution requirements for photo interpretation and multispectral pattern recognition are discussed. The potential contributions of these systems in specific experiments is also included.

Bryant, N.↗

A survey of visual preprocessing and shape representation techniques

Many recent theories and methods proposed for visual preprocessing and shape representation are summarized. The survey brings together research from the fields of biology, psychology, computer science, electrical engineering, and most recently, neural networks. It was motivated by the need to preprocess images for a sparse distributed memory (SDM), but the techniques presented may also prove useful for applying other associative memories to visual pattern recognition. The material of this survey is divided into three sections: an overview of biological visual processing; methods of preprocessing (extracting parts of shape, texture, motion, and depth); and shape representation and recognition (form invariance, primitives and structural descriptions, and theories of attention).

Olshausen, Bruno A.↗

Paradoxical monocular stereopsis and perspective vergence

The question of how to most effectively convey depth in a picture is a multifaceted problem, both because of potential limitations of the chosen medium (stereopsis, image motion), and because effectiveness can be defined in various ways. Practical applications usually focus on information transfer, i.e., effective techniques for evoking recognition of implied depth relationships, but this issue depends on subjective judgements which are difficult to scale when stimuli are above threshold. Two new approaches to this question are proposed here which are based on alternative criteria for effectiveness. Paradoxical monocular stereopsis is a remarkably compelling impression of depth which is evoked during one-eyed viewing of only certain illustrations; it can be unequivocally recognized because the feeling of depth collapses when one shifts to binocular viewing. An exploration of the stimulus properties which are effective for this phenomenon may contribute useful answers for the more general perceptual problem. Positive vergence is an eye-movement response associated with changes of fixation point within a picture which implies depth; it also arises only during monocular viewing. The response is directionally appropriate (i.e., apparently nearer objects evoke convergence, and vice versa), but the magnitude of the response can be altered consistently by making relatively minor changes in the illustration. The cross-subject agreement in changes of response magnitude would permit systematic exploration to determine which stimulus configurations are most effective in evoking perspective vergence, with quantitative answers based upon this involuntary reflex. It may well be that most effective pictures in this context will embody features which would increase effectiveness of pictures in a more general sense.

Enright, J. T.↗

Fuzzy set methods for object recognition in space applications

Progress on the following tasks is reported: (1) fuzzy set-based decision making methodologies; (2) feature calculation; (3) clustering for curve and surface fitting; and (4) acquisition of images. The general structure for networks based on fuzzy set connectives which are being used for information fusion and decision making in space applications is described. The structure and training techniques for such networks consisting of generalized means and gamma-operators are described. The use of other hybrid operators in multicriteria decision making is currently being examined. Numerous classical features on image regions such as gray level statistics, edge and curve primitives, texture measures from cooccurrance matrix, and size and shape parameters were implemented. Several fractal geometric features which may have a considerable impact on characterizing cluttered background, such as clouds, dense star patterns, or some planetary surfaces, were used. A new approach to a fuzzy C-shell algorithm is addressed. NASA personnel are in the process of acquiring suitable simulation data and hopefully videotaped actual shuttle imagery. Photographs have been digitized to use in the algorithms. Also, a model of the shuttle was assembled and a mechanism to orient this model in 3-D to digitize for experiments on pose estimation is being constructed.

Keller, James M.↗

Evaluation of LANDSAT-2 (ERTS) images applied to geologic structures and mineral resources of South America

The author has identified the following significant results. Work with the Image 100 clearly demonstrates that radiance values of LANDSAT data can be used for correlation of geologic formations across international boundaries. The Totora Formation of the Corocoro Group of Tertiary age was traced from known outcrops near Tiahuanaco, Bolivia, along the south side of Lake Titicaca westward into Peru where the same rocks are considered to be Cretaceous in age. This inconsistency suggests: (1) that a review of this formation is needed by joint geological surveys of both countries to determine similarities, differences, and the true age; (2) that recognition of the extension of the copper-bearing Totora Formation of Bolivia into Peru may provide Peru with a new target for exploration. Equal radiance maps made by use of the Image 100 system show as many as eight different units within salar deposits (salt flats) of the Bolivian Altiplano. Standard film processed images show them as nearly uniform areas of white because of lack of dynamic range in film products. The Image 100 system, therefore, appears to be of great assistance in subdividing the salt flats on the basis of moisture distribution, surface roughness, and distribution of windblown materials. Field work is needed to determine these relationships to mineral composition and distribution. Images representing seasonal changes should also improve the accuracy of such maps. Radiance values of alteration zones related to the occurrence of porphyry copper ores were measured at the San Juan del Abra deposit of northern Chile using the Image 100 system. The extent to which these same values may be used to detect similar alteration zones in other areas has not yet been tested.

Carter, W. D.↗

Testing of the Support Vector Machine for Binary-Class Classification

The Support Vector Machine is a powerful algorithm, useful in classifying data in to species. The Support Vector Machines implemented in this research were used as classifiers for the final stage in a Multistage Autonomous Target Recognition system. A single kernel SVM known as SVMlight, and a modified version known as a Support Vector Machine with K-Means Clustering were used. These SVM algorithms were tested as classifiers under varying conditions. Image noise levels varied, and the orientation of the targets changed. The classifiers were then optimized to demonstrate their maximum potential as classifiers. Results demonstrate the reliability of SMV as a method for classification. From trial to trial, SVM produces consistent results

autonomous target recognition systemr↗

Fuzzy Set Methods for Object Recognition in Space Applications

Progress on the following four tasks is described: (1) fuzzy set based decision methodologies; (2) membership calculation; (3) clustering methods (including derivation of pose estimation parameters), and (4) acquisition of images and testing of algorithms.

Keller, James M.↗

Synoptic cryosphere-atmosphere interactions in the Northern Hemisphere from DMSP image analysis

A climatology of Northern Hemisphere cyclonic cloud vortices is developed from high-resolution Defense Meteorological Satellite Program (DMSP) infrared imagery for mid-season months. The technique which is described involves pattern recognition using a detailed vortex classification system. Variations in hemispheric frequencies of successive vortex types are dominantly seasonal rather than latitudinal and imply a close association with surface (mainly cryosphere) variations. More extensive sea ice or snow cover in April and January is associated with increased cyclogenesis, indicating enhanced surface-atmosphere feedback. A significant relationship exists between cloud-vortex variations and the sea ice boundary, but not with the continental snowline.

Carleton, A. M.↗

LANDSAT and radar mapping of intrusive rocks in SE-Brazil

The feasibility of intrusive rock mapping was investigated and criteria for regional geological mapping established at the scale of 1:500,00 in polycyclic and polymetamorphic areas using the logic method of photointerpretation of LANDSAT imagery and radar from the RADAMBRASIL project. The spectral behavior of intrusive rocks, was evaluated using the interactive multispectral image analysis system (Image-100). The region of Campos (city) in northern Rio de Janeiro State was selected as the study area and digital imagery processing and pattern recognition techniques were applied. Various maps at the 2:250,000 scale were obtained to evaluate the results of automatic data processing.

Parada, N. D. J.↗

A multifunction recognition operator for telerobotic vision

Research on developing an operator capable of performing the various subtasks required of a telerobot's vision sensor is reported. The operator uses a goal-driven matching technique which is an application of a linear programming method that readily adapts to the elastic template matching approach to pattern recognition. Four applications of the operator are discussed: (1) three-space location of an isolated object; (2) shape determination of isolated planar figures; (3) image compression/restoration; and (4) shape decomposition.

Goode, P. W., IV↗

Coherent optical correlator using a deformable mirror device spatial light modulator in the Fourier plane

Attention is given to experimental results for a binary phase-only filter implementation's correlation operations, using the deformable mirror device (DMD) spatial light modulator as the Fourier plane filter. These results demonstrate the basic capabilities of the DMD in an image correlator system which, in combination with the potential 8-kHz frame rate for 128 x 128 DMDs, can constitute a very high speed pattern recognition system. The DMD has the further capability of operating in the analog mode.

Florence, James M.↗

Achromatical Optical Correlator

Signal-to-noise ratio exceeds that of monochromatic correlator. Achromatical optical correlator uses multiple-pinhole diffraction of dispersed white light to form superposed multiple correlations of input and reference images in output plane. Set of matched spatial filters made by multiple-exposure holographic process, each exposure using suitably-scaled input image and suitable angle of reference beam. Recording-aperture mask translated to appropriate horizontal position for each exposure. Noncoherent illumination suitable for applications involving recognition of color and determination of scale. When fully developed achromatical correlators will be useful for recognition of patterns; for example, in industrial inspection and search for selected features in aerial photographs.

Chao, Tien-Hsin↗