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At least 397 records · Page 22

Reinforcement learning based hybrid bond-order coarse-grained interatomic potentials for exploring mesoscale aggregation in liquid–liquid mixtures

Exploring mesoscopic physical phenomena has always been a challenge for brute-force all-atom molecular dynamics simulations. Although recent advances in computing hardware have improved the accessible length scales, reaching mesoscopic timescales is still a significant bottleneck. Coarse-graining of all-atom models allows robust investigation of mesoscale physics with a reduced spatial and temporal resolution but preserves desired structural features of molecules, unlike continuum-based methods. Here, we present a hybrid bond-order coarse-grained forcefield (HyCG) for modeling mesoscale aggregation phenomena in liquid–liquid mixtures. The intuitive hybrid functional form of the potential offers interpretability to our model, unlike many machine learning based interatomic potentials. We parameterize the potential with the continuous action Monte Carlo Tree Search (cMCTS) algorithm, a reinforcement learning (RL) based global optimizing scheme, using training data from all-atom simulations. The resulting RL-HyCG correctly describes mesoscale critical fluctuations in binary liquid–liquid extraction systems. cMCTS, the RL algorithm, accurately captures the mean behavior of various geometrical properties of the molecule of interest, which were excluded from the training set. The developed potential model along with the RL-based training workflow could be applied to explore a variety of other mesoscale physical phenomena that are typically inaccessible to all-atom molecular dynamics simulations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Force Field X: A computational microscope to study genetic variation and organic crystals using theory and experiment

Force Field X (FFX) is an open-source software package for atomic resolution modeling of genetic variants and organic crystals that leverages advanced potential energy functions and experimental data. FFX currently consists of nine modular packages with novel algorithms that include global optimization via a many-body expansion, acid–base chemistry using polarizable constant-pH molecular dynamics, estimation of free energy differences, generalized Kirkwood implicit solvent models, and many more. Applications of FFX focus on the use and development of a crystal structure prediction pipeline, biomolecular structure refinement against experimental datasets, and estimation of the thermodynamic effects of genetic variants on both proteins and nucleic acids. The use of Parallel Java and OpenMM combines to offer shared memory, message passing, and graphics processing unit parallelization for high performance simulations. Overall, the FFX platform serves as a computational microscope to study systems ranging from organic crystals to solvated biomolecular systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The long road to ignition: An eyewitness account

This paper reviews the many twists and turns in the long journey that culminated in ignition in late 2022 using the laser heated indirect-drive approach to imploding DT filled targets at the National Ignition Facility (NIF), located at the Lawrence Livermore National Laboratory (LLNL). We describe the early origins of the Laser Program at LLNL and key developments such as the paradigm shifting birth of high energy density physics (HEDP) studies with lasers, changes in choice of laser wavelength, and the development of key diagnostics and computer codes. Fulfilling the requirements of the multi-faceted Nova Technical Contract was a necessary condition for the approval of the NIF, but more importantly, the end of the Cold War and the cessation of nuclear testing were key catalysts in that approval, along with the ready-and-waiting field of HEDP. The inherent flexibility of the field of laser driven inertial confinement fusion played a fundamental role in achieving success at the NIF. We describe how the ultimately successful ignition target design evolved from the original “point design” target, through the lessons of experiment. All key aspects of that original design changed: The capsule's materials and size were changed; the hohlraum's materials, size, laser entrance hole size, and gas fills were also all changed, as were the laser pulse shapes that go along with all those changes. The philosophy to globally optimize performance for stability (by raising the adiabat and thus lowering the implosion convergence) was also key, as was progress in target fabrication, and in increasing NIF's energy output. The persistence of the research staff and the steadfast backing of our supporters were also necessary elements in this success. We gratefully acknowledge seven decades of researcher endeavors and four decades of the dedicated efforts of many hundreds of personnel across the globe who have participated in NIF construction, operation, target fabrication, diagnostic, and theoretical advances that have culminated in ignition.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

RANGE: A robust adaptive nature-inspired global explorer of potential energy surfaces

With the growing demand for realistic representations of chemical structures and the advent of exascale computing, the intelligent sampling of potential energy surfaces and efficient identification of global minima have become more essential but also more feasible. Building on prior studies demonstrating the efficiency of the Artificial Bee Colony (ABC) swarm intelligence algorithm, we report a hybrid metaheuristic framework that integrates the adaptive exploration capabilities of ABC coupled with the exploitation strengths of genetic algorithms (GA) in a scalable, Python-based implementation. The resulting tool, RANGE (Robust Adaptive Nature-inspired Global Explorer), provides seamless interfaces to multiple potential energy evaluators, either directly or via widely used Python libraries, and is designed for high-performance computing environments. We describe the implementation details of RANGE and evaluate its performance, relative to ABC- or GA-alone based algorithms, on a variety of chemical systems, including molecular clusters and heterogeneous surfaces. In conclusion, our results demonstrate RANGE’s efficiency, robustness, and broad applicability in addressing challenging global optimization problems in computational chemistry and materials science.

Algorithms and data structure↗

Role of electron correlation on the adenine dimer interaction for non-equilibrium geometries: a benchmark Quantum Monte Carlo study

The accurate description of non-covalent interactions is critical for understanding the structure, dynamics, and eventual function of biomolecules. The adenine dimer serves as a benchmark system for computational methods due to its role in nucleic acid structures and its rich conformational landscape. In this study, we employ benchmark diffusion quantum Monte Carlo (DMC) methods to investigate the relative energies and role of electron correlation on a set of adenine dimer conformations generated via a search of the potential energy landscape using the global optimizer algorithm. Relative DMC energies are compared against a wide range of density functional theory (DFT) approximation results. We find that although most of the DFT functionals perform well for low-energy structures, their accuracy varies significantly for higher-energy conformations, including stacked and T-shaped structures. A large fraction of the variation is due to the treatment of the van der Waals interaction. BLYP, B3LYP, and PBE0 significantly improve with added D4 dispersion, while the recent r2SCAN-D4 and ωB97M-V functionals show the least scatter and closest agreement with the DMC. These findings highlight the delicate nature of these interactions in biomolecular systems and provide guidance for simulations of their structure and dynamics and for the development of machine learned interatomic potentials.

Washburn, Laurel [ORNL] (ORCID:0000000324179335)↗

Minimum local distance density estimation

We present a local density estimator based on first-order statistics. To estimate the density at a point, $x$, the original sample is divided into subsets and the average minimum sample distance to $x$ over all such subsets is used to define the density estimate at $x$. The tuning parameter is thus the number of subsets instead of the typical bandwidth of kernel or histogram-based density estimators. The proposed method is similar to nearest-neighbor density estimators but it provides smoother estimates. We derive the asymptotic distribution of this minimum sample distance statistic to study globally optimal values for the number and size of the subsets. Simulations are used to illustrate and compare the convergence properties of the estimator. The results show that the method provides good estimates of a wide variety of densities without changes of the tuning parameter, and that it offers competitive convergence performance.

97 MATHEMATICS AND COMPUTING↗

Functionally graded magnetic materials: a perspective to advance charged particle optics through compositional engineering

Additive manufacturing has ushered in a new paradigm of bottom-up materials-by-design of spatially non-uniform materials. Functionally graded materials have locally tailored compositions to provide optimized global properties and performance. In this letter, we propose an opportunity for the application of graded magnetic materials as lens elements for charged particle optics. A Hiperco50/Hymu80 (FeCo-2 V/Fe-80Ni-5Mo) graded magnetic alloy was successfully additively manufactured via Laser Directed Energy Deposition with spatially varying magnetic properties. The compositional gradient is then applied using computational simulations to demonstrate how a tailored material can enhance the magnetic performance of a critical, image-forming component of a transmission electron microscope.

36 MATERIALS SCIENCE↗

Phase retrieval and reconstruction of coherent synthesis by genetic algorithm

Abstract In the context of diffractive optics, phase retrieval is a heavily investigated process of recreating an entire complex electric field from partial amplitude-only information through iterative algorithms. However, existing methods can fall into local minima during reconstructions or struggle to recover unusual and novel electric field distributions. We present a numerical method based on a global-optimization genetic algorithm that reconstructs non-trivial electric field distributions from single diffracted intensity distributions. Diffraction and propagation of the optical fields over arbitrary distances is modeled through implementation of the angular spectrum technique. Additionally, a coherently-locked laser array system is used as an experimental case-study demonstrating 0.09 π phase reconstruction accuracy of initial laser parameters from single intensity images.

59 BASIC BIOLOGICAL SCIENCES↗

MTUQ: a framework for estimating moment tensors, point forces, and their uncertainties

SUMMARY We introduce MTUQ, an open-source Python package for seismic source estimation and uncertainty quantification, emphasizing flexibility and operational scalability. MTUQ provides MPI-parallelized grid search and global optimization capabilities, compatibility with 1-D and 3-D Green’s function database formats, customizable data processing, C-accelerated waveform and first-motion polarity misfit functions, and utilities for plotting seismic waveforms and visualizing misfit and likelihood surfaces. Applicability to a range of full- and constrained-moment tensor, point force, and centroid inversion problems is possible via a documented application programming interface, accompanied by example scripts and integration tests. We demonstrate the software using three different types of seismic events: (1) a 2009 intraslab earthquake near Anchorage, Alaska; (2) an episode of the 2021 Barry Arm landslide in Alaska; and (3) the 2017 Democratic People’s Republic of Korea underground nuclear test. With these events, we illustrate the well-known complementary character of body waves, surface waves, and polarities for constraining source parameters. We also convey the distinct misfit patterns that arise from each individual data type, the importance of uncertainty quantification for detecting multimodal or otherwise poorly constrained solutions, and the software’s flexible, modular design.

58 GEOSCIENCES↗

Direct structural retrieval from gas-phase ultrafast diffraction data using a genetic algorithm

Ultrafast scattering techniques such as ultrafast electron diffraction and ultrafast x-ray diffraction have been utilized to elucidate the structural dynamics, reaction intermediates, and final products in molecular reactions following photoexcitation. The time-dependent structures are typically not directly retrieved from the experimental data, but they rely on comparison with calculations. The genetic algorithm (GA), a global optimization strategy, can be used to retrieve the molecular structures directly from diffraction patterns without any theoretical input. However, the robustness of the GA with respect to real experimental conditions such as a limited momentum transfer range, noise, and artifacts has not been studied in detail. In this work, we characterize the performance of the GA with simulated data that mimic realistic experimental conditions. We have developed and implemented a variant of the GA specific to diffraction measurements which performs better in the presence of imperfect data compared to the standard implementation of the GA. We demonstrate this method with both synthetic data and experimental ultrafast electron diffraction data on the UV-induced photodissociation of trifluoroiodomethane (C⁢F 3⁡ I) molecules.

74 ATOMIC AND MOLECULAR PHYSICS↗

Symmetric Rydberg controlled- Z gates with adiabatic pulses

We analyze neutral atom Rydberg C Z gates based on adiabatic pulses applied symmetrically to both atoms. Analysis with smooth pulse shapes and Cs atom parameters predicts the gates can create Bell states with fidelity F > 0.999 using adiabatic rapid passage (ARP) pulses. With globally optimized adiabatic pulse shapes, in a two-photon excitation process, we generate Bell states with fidelity F = 0.997. The analysis fully accounts for spontaneous emission from intermediate and Rydberg states, including the Rydberg lifetime in a room temperature environment, but does not include errors arising from laser noise. In conclusion, the gate protocols do not require individual addressing and are shown to be robust against Doppler shifts due to atomic motion.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Two-dimensional topological crystalline quantum spin Hall effect in transition metal intercalated compounds

While most of the two-dimensional (2D) topological crystalline insulators (TCIs) belong to group IV-VI narrow-band-gap semiconductors in a square lattice, in the present work we predict a TCI family based on transition metal intercalated compounds in a hexagonal lattice. First-principles calculations combined with a substrate-fixed globally optimal structural search technique show that a layer of Os prefers a uniform distribution between two graphene sheets. Band dispersion calculations reveal a Dirac point and a Dirac nodal ring near the Fermi level. The Dirac point is ascribed to the hybridization of e 2 and e 2 * orbitals, and the Dirac ring is formed due to dispersion of s and e 1 * orbitals. Upon inclusion of spin-orbit coupling, these Dirac states open topologically nontrivial local band gaps, which are characterized by nonzero mirror Chern numbers. The quantum spin Hall effect is also observed by integrating the spin Berry curvature in the Brillouin zone. In contrast to the 2D group IV-VI TCIs whose band inversions at X and Y points are “locked” by C 4 rotation symmetry, here the relative energy of two local band gaps can be manipulated by in-plane biaxial strains. Some other similar intercalation compounds are also shown to be topologically nontrivial. Our work extends the 2D TCI family into a hexagonal lattice composed of transition metals.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Adaptive Generation of Training Data for ML Reduced Model Creation

Machine learning proxy models are often used to speed up or completely replace complex computational models. The greatly reduced and deterministic computational costs enable new use cases such as digital twin control systems and global optimization. The challenge of building these proxy models is generating the training data. A naive uniform sampling of the input space can result in a non-uniform sampling of the output space of a model. This can cause gaps in the training data coverage that can miss finer scale details resulting in poor accuracy. While larger and larger data sets could eventually fill in these gaps, the computational burden of full-scale simulation codes can make this prohibitive. In this paper, we present an adaptive data generation method that utilizes uncertainty estimation to identify regions where training data should be augmented. By targeting data generation to areas of need, representative data sets can be generated efficiently. The effectiveness of this method will be demonstrated on a simple one-dimensional function and a complex multidimensional physics model.

Cianciosa, Mark↗

Performance Improvements Through Advanced PV Backtracking on Uneven Terrain

The climatic sensitivity of new terrain-aware backtracking algorithms is evaluated across 800 locations in the continental USA on a representative synthetic rolling terrain. We find that a global optimization approach to backtracking results in climate-specific annual energy gains of 2.4%–3.2% relative to a traditional backtracking algorithm baseline. We identify a strong logarithmic correlation between local diffuse fraction and yield improvement, and highlight the effect of seasonal precipitation on performance gains. We also find that a backtracking approach, which approximates the terrain as constant, does not offer significant annual energy gains over the baseline on the synthetic terrain. Our findings suggest that specific yield from backtracking in the USA can be improved by as much as 88 kWh/kW by considering terrain when selecting a backtracking algorithm.

Backtracking↗

Feature Tracking and Visualization of Madden-Julian Osciallation in Climate Simulation

Madden-Julian Oscillation (MJO) is one of the less understood aspects of tropical meteorology, which plays a significant role in tropical intra-seasonal variations in rain, temperature and winds over the Indian and Pacific Oceans. In this paper, we present an integrated analysis and visualization framework for MJO episodes simulated by a high resolution regional model. To distinguish MJOs from other weather phenomena, our framework utilizes domain knowledge to track MJOs as finding the globally optimized properties in the data. In addition to enhancing the animation with feature tracking, our visualization system also integrates different visualization components such as Virtual Globe and Hovmoller Diagrams to visualize large scale events both in space and time. By linking all of these visualization components on a web-based interface, scientists can identify cloud and environmental processes associated with the initiation and eastward propagation of MJO more easily.

big-data visualization↗

Fast Iterative Multi-site Hosting Capacity Analysis for Distribution Systems With Search Space Pruning

Interconnection studies for distributed energy resources (DERs) is a time-intensive process, primarily due to the necessity of solving large number of power flow scenarios. Hosting capacity analysis (HCA) is a time-consuming aspect of interconnection studies that is divided into single-site HCA (SHCA) and multi-site HCA (MHCA). From a computational and understandable standpoint, the industry seeks iteration-based solutions for SHCA, although it doesn't maximize the total DER hosting capacity (DERHC) of the grid, as MHCA does. While non-iterative solutions are available for MHCA, they involve a trade-off between the modeling accuracy of the distribution system, solution quality, and ease of understanding. In this work, we present a fast iterative solution for MHCA, reducing computational complexity by eliminating the need to solve power flows for a large amount of search space, thus making iterative solutions feasible. This iterative approach guarantees both a global optimal solution with sufficient time and a fast, close-to-optimal solution through efficient search space pruning. It also easily integrates with existing utility HCA tools. The results are demonstrated on select locations in the IEEE-123 bus system for community-scale interconnection studies. We highlight the benefits of skipping the need to solve millions of power flows, all while maximizing the grid's total DERHC.

Guddanti, Kishan Prudhvi↗

Stochastic Dual Algorithm for Voltage Regulation in Distribution Networks with Discrete Loads

This paper considers power distribution networks with distributed energy resources and designs an incentive-based algorithm that allows the network operator and customers to pursue given operational and economic objectives while concurrently ensuring that voltages are within prescribed limits. Heterogeneous DERs with continuous and discrete control commands are considered. We address four major challenges: discrete decision variables, non-convexity due to a Stackelberg game structure, unavailability of private information from customers, and asynchronous operation. Starting from a non-convex setting, we develop a distributed stochastic dual algorithm that solves a relaxed problem, and prove that the proposed algorithm achieves the global optimal solution of the original problem on average. Feasible values for discrete decision variables are also recovered. Stability of the algorithm is analytically established and numerically corroborated.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Networked Microgrids for Self-healing Power Systems

This paper proposes a transformative architecture for the normal operation and self-healing of networked microgrids (MGs). MGs can support and interchange electricity with each other in the proposed infrastructure. The networked MGs are connected by a physical common bus and a designed two-layer cyber communication network. The lower layer is within each MG where the energy management system (EMS) schedules the MG operation; the upper layer links a number of EMSs for global optimization and communication. In the normal operation mode, the objective is to schedule dispatchable distributed generators (DGs), energy storage systems (ESs) and controllable loads to minimize the operation costs and maximize the supply adequacy of each MG. When a generation deficiency or fault happens in a MG, the model switches to the self-healing mode and the local generation capacities of other MGs can be used to support the on-emergency portion of the system. A consensus algorithm is used to distribute portions of the desired power support to each individual MG in a decentralized way. The allocated portion corresponds to each MG’s local power exchange target which is used by its EMS to perform the optimal schedule. The resultant aggregated power output of networked MGs will be used to provide the requested power support. Test cases demonstrate the effectiveness of the proposed methodology.

Consensus Algorithm↗