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At least 397 records · Page 22

Comparison of repair of DNA double-strand breaks in identical sequences in primary human fibroblast and immortal hamster-human hybrid cells harboring a single copy of human chromosome 11

We have optimized a pulsed-field gel electrophoresis assay that measures induction and repair of double-strand breaks (DSBs) in specific regions of the genome (Lobrich et al., Proc. Natl. Acad. Sci. USA 92, 12050-12054, 1995). The increased sensitivity resulting from these improvements makes it possible to analyze the size distribution of broken DNA molecules immediately after the introduction of DSBs and after repair incubation. This analysis shows that the distribution of broken DNA pieces after exposure to sparsely ionizing radiation is consistent with the distribution expected from randomly induced DSBs. It is apparent from the distribution of rejoined DNA pieces after repair incubation that DNA ends continue to rejoin between 3 and 24 h postirradiation and that some of these rejoining events are in fact misrejoining events, since novel restriction fragments both larger and smaller than the original fragment are generated after repair. This improved assay was also used to study the kinetics of DSB rejoining and the extent of misrejoining in identical DNA sequences in human GM38 cells and human-hamster hybrid A(L) cells containing a single human chromosome 11. Despite the numerous differences between these cells, which include species and tissue of origin, levels of TP53, expression of telomerase, and the presence or absence of a homologous chromosome for the restriction fragments examined, the kinetics of rejoining of radiation-induced DSBs and the extent of misrejoining were similar in the two cell lines when studied in the G(1) phase of the cell cycle. Furthermore, DSBs were removed from the single-copy human chromosome in the hamster A(L) cells with similar kinetics and misrejoining frequency as at a locus on this hybrid's CHO chromosomes.

NASA Program Biomedical Research and Countermeasur↗

Soil Moisture Retrieval During a Corn Growth Cycle using L-band (1.6 GHz) Radar Observations

New opportunities for large-scale soil moisture monitoring will emerge with the launch of two low frequency (L-band 1.4 GHz) radiometers: the Aquarius mission in 2009 and the Soil Moisture and Ocean Salinity (SMOS) mission in 2008. Soil moisture is an important land surface variable affecting water and heat exchanges between atmosphere, land surface and deeper ground water reservoirs. The data products from these sensors provide valuable information in a range of climate and hydrologic applications (e.g., nume~cal weather prediction, drought monitoring, flood forecasting, water resources management, etc.). This paper describes a unique data set that was collected during a field campaign at OPE^ (Optimizing Production Inputs for Economic and Environmental Enhancements) site in Beltsville, Maryland throughout the eompj2ete corn growing in 2002. This investigation describes a simple methodology to correct active microwave observations for vegetation effects, which could potentially be implemented in a global soil moisture monitoring algorithm. The methodology has been applied to radar observation collected during the entire corn growth season and validation against ground measurements showed that the top 5-cm soil moisture can be retrieved with an accuracy up to 0.033 [cu cm/cu cm] depending on the sensing configuration.

Joseph, Alicia T.↗

Magnetically-conformed, Variable Area Discharge Chamber for Hall Thruster, and Method

The invention is a Hall thruster that incorporates a discharge chamber having a variable area channel including an ionization zone, a transition region, and an acceleration zone. The variable area channel is wider through the acceleration zone than through the ionization zone. An anode is located in a vicinity of the ionization zone and a cathode is located in a vicinity of the acceleration zone. The Hall thruster includes a magnetic circuit which is capable of forming a local magnetic field having a curvature within the transition region of the variable area channel whereby the transition region conforms to the curvature of the local magnetic field. The Hall thruster optimizes the ionization and acceleration efficiencies by the combined effects of the variable area channel and magnetic conformity.

Hofer, Richard R.↗

Implementing Marine Organic Aerosols Into the GEOS-Chem Model

Marine-sourced organic aerosols (MOA) have been shown to play an important role in tropospheric chemistry by impacting surface mass, cloud condensation nuclei, and ice nuclei concentrations over remote marine and coastal regions. In this work, an online marine primary organic aerosol emission parameterization, designed to be used for both global and regional models, was implemented into the GEOS-Chem model. The implemented emission scheme improved the large under-prediction of organic aerosol concentrations in clean marine regions (normalized mean bias decreases from -79% when using the default settings to -12% when marine organic aerosols are added). Model predictions were also in good agreement (correlation coefficient of 0.62 and normalized mean bias of -36%) with hourly surface concentrations of MOA observed during the summertime at an inland site near Paris, France. Our study shows that MOA have weaker coastal-to-inland concentration gradients than sea-salt aerosols, leading to several inland European cities having > 10% of their surface submicron organic aerosol mass concentration with a marine source. The addition of MOA tracers to GEOS-Chem enabled us to identify the regions with large contributions of freshly-emitted or aged aerosol having distinct physicochemical properties, potentially indicating optimal locations for future field studies.

Aerosols↗

Progress on Modular Unmanned Aircraft Technology

Modular unmanned aerial systems (UAS) are a new development in UAS architecture that holds promise for reusable, reconfigurable hosts for science and autonomy payloads. Modularity of airframe subcomponents lowers costs, facilitates rapid field repair, permits holistic optimization, and enables mass-customization of bespoke platforms customizing the aircraft around a given payload or payloads. Without modular UAS, sensors and instruments often must be designed to fit in a non-modifiable airframe. This talk will present how the nexus of modularity, rapid prototyping and design reuse opens up new tradeoffs, and discuss the envisioned benefits, price paid, and enhanced missions made possible by this new approach to aircraft development.

Dahlgren, Robert P.↗

Optimizing Science Return from Plato's Observations of the Kepler Field

The Plato mission could substantially enhance its scientific yield by focusing a significant fraction of its observations with all 24 cameras viewing the Kepler Field of View (FOV). Kepler, while exceptionally productive, did not accomplish its goal of providing a direct measurement of the abundance of Earth-analog planet around sunlike stars. On this issue, Plato observations centered on the Kepler FOV would enable planet searches using the combined data sets to achieve more precise estimates of planetary occurrence rates than obtainable using data from either mission alone. The ecliptic latitude of the Kepler FOV is too low for Plato to observe with 24 cameras year-round, so current plan’s for Plato’s Northern Stare places the Kepler FOV in the periphery, reducing the number of photons collected from Kepler targets by factors of 2 or 4. We propose instead four ~6 - 8 month Plato stares with 24 cameras observing the Kepler FOV during the Plato primary mission, instead of a single 2 year stare with the Kepler FOV located to the periphery. This change would greatly increase the amount of 'Plato glass’ dedicated to the continued study of the Kepler FOV, while still enabling Plato to observe other parts of the sky during the majority of its prime mission. In addition to discovering planets below Kepler's detection threshold, this change would yield transit follow-up of thousands of known exoplanets with an effective throughput of a 0.6 m space telescope. It would also extend the observing baseline of the Kepler FOV to timescales of decades, providing key data for stellar cycles, the analysis of transit timing variations, and other decade-timescale variations. Such a campaign enhances the likelihood of the detection of true Earth-analog transiting planet candidates around sunlike stars, provide the best statistical study of exoplanet systems with transit timing variations and duration variations, and open up the study of stellar variability to new time-domains with precision on large numbers of faint targets that only 24 Plato cameras can provide.

Jack Lissauer↗

Generating Essential Climate Variables from Multiple Satellite Hyperspectral Remote Sensors

Hyperspectral observations from satellite-based sensors provide high information content for the Earth’s atmospheric and surface properties. Traditionally, long-term climate products are derived by performing spatial and temporal averaging of level-2 satellite products. There are two shortcomings of this approach. First, it is a time-consuming process to generate level-2 data products since modern hyperspectral satellite sensors have millions of observations each day with thousands of spectral channels for each observation. Secondly, differences in level-2 retrieval algorithms can lead to errors in the fused multi-satellite data. We have developed a radiometrically consistent spectral fingerprinting method, which overcomes the above-mentioned shortcomings, to derive climate change signals from multiple satellite sensors using spatiotemporally averaged level-1 data. We have applied this method to data collected from Atmospheric Infrared Sounder (AIRS) on Aqua satellite and Cross-track Infrared Sounder (CrIS) on SNPP and NOAA20 and generated decade-long climate data records for atmospheric temperature, water vapor, cloud, trace gases, and surface skin temperature. A key component to this work is a set of observational-based radiative kernels produced from CrIS level-1 data using a single field of view (SFOV) optimal estimation retrieval algorithm. Only limited CrIS level-1 data (e.g., 1-2 years of data) are needed to the derive radiative kernels. Our Principal Component-based Radiative Model (PCRTM) enables us to perform SFOV retrievals under all sky conditions and provides radiative kernels (including those for clouds) needed by the spectral fingerprinting method. In this presentation, we will describe the basic methodology, the details of the algorithm, and results from NASA Aqua AIRS and Suomi-NPP CrIS data. The method can be applied to study future hyperspectral remote sensors such as CLARREO (Climate Absolute Radiance and Refractivity Observatory) Pathfinder (CPF), Tropospheric Emissions: Monitoring of Pollution (TEMPO), Surface Biology and Geology (SBG), Atmosphere Observing System (AOS).

Xu Liu↗

Deriving Essential Climate Variable Data from Multiple Satellite Remote Sensors Using a Consistent Fingerprinting Method

Hyperspectral observations from satellite-based sensors provide high information content for the Earth’s atmospheric and surface properties. Traditionally, long-term climate products are derived by performing spatial and temporal averaging of level-2 satellite products. It is a time-consuming process to generate level-2 data products since modern hyperspectral satellite sensors have millions of observations each day with thousands of spectral channels for each observation. Additionally, differences in level-2 retrieval algorithms can lead to errors in the climate products when fusing data from different satellite sensors. We have developed a radiometrically consistent spectral fingerprinting method, which overcomes the above-mentioned shortcomings, to derive climate change signals from multiple satellite sensors using spatiotemporally averaged level-1 data. We have applied this method to Atmospheric Infrared Sounder (AIRS) and Cross-track Infrared Sounder (CrIS) data and generated decade-long climate data records for atmospheric temperature, water vapor, cloud, trace gases, and surface skin temperature. A key component to this work is a set of observational-based radiative kernels produced from CrIS level-1 data using a single field of view (SFOV) optimal estimation retrieval algorithm. Only limited CrIS level-1 data (e.g., 1-2 years of data) are needed to the derive radiative kernels. Our Principal Component-based Radiative Model (PCRTM) enables us to perform SFOV retrievals under all sky conditions and provides radiative kernels (including those for clouds) needed by the spectral fingerprinting method. In this presentation, we will describe the basic methodology, the details of the algorithm, and results from NASA Aqua AIRS and Suomi-NPP CrIS data. The method can be applied to study future hyperspectral remote sensors such as CLARREO (Climate Absolute Radiance and Refractivity Observatory) Pathfinder (CPF), Tropospheric Emissions: Monitoring of Pollution (TEMPO), Surface Biology and Geology (SBG), Aerosol and Cloud, Convection and Precipitation (ACCP).

Xu Liu↗

Design of an Emittance Compensation Superconducting Magnet Package for LCLS-II-HE's SRF Photo-Injector

An SRF photo-injector (low frequency, quarter-wave resonator plus emittance compensation magnet) is planned for LCLS-II-HE as it can provide a higher cathode gradient and better electron beam quality than other types of CW electron guns. The magnet package is located immediately downstream of the SRF cavity, and incorporates a solenoid doublet, bucking coils for reduction of the fringe field, normal/skew quadrupoles and horizontal/vertical dipoles. All the magnets are wound of NbTi wire and operate in liquid helium environment. The solenoid package is located inside the SRF gun cryomodule. Design considerations include space limitations, optimal emittance compensation, the magnetic field limits in the superconducting wire and quench protection. The solenoid coils must provide a peak excitation > 25 kgauss 2 ·cm, a fringe field < 20 gauss at the wall of the SRF cavity, an integrated dipole field < 90 gauss·cm and an integrated quadrupole field < 10 gauss. As a result, a genetic algorithm was used to optimize the solenoid design. Correction dipoles and quadrupoles were designed using coil dominated Walstrom style coils.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Greedy permanent magnet optimization

Abstract A number of scientific fields rely on placing permanent magnets in order to produce a desired magnetic field. We have shown in recent work that the placement process can be formulated as sparse regression. However, binary, grid-aligned solutions are desired for realistic engineering designs. We now show that the binary permanent magnet problem can be formulated as a quadratic program with quadratic equality constraints, the binary, grid-aligned problem is equivalent to the quadratic knapsack problem with multiple knapsack constraints, and the single-orientation-only problem is equivalent to the unconstrained quadratic binary problem. We then provide a set of simple greedy algorithms for solving variants of permanent magnet optimization, and demonstrate their capabilities by designing magnets for stellarator plasmas. The algorithms can a-priori produce sparse, grid-aligned, binary solutions. Despite its simple design and greedy nature, we provide an algorithm that compares with or even outperforms the state-of-the-art algorithms while being substantially faster, more flexible, and easier to use.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Multidisciplinary concurrent optimization framework for multi-phase building design process

Modern day building design projects require multidisciplinary expertise from architects and engineers across various phases of the design (conceptual, preliminary, and detailed) and construction processes. The Architecture Engineering and Construction (AEC) community has recently shifted gears toward leveraging design optimization techniques to make well-informed decisions in the design of buildings. However, most of the building design optimization efforts are either multidisciplinary optimization confined to just a specific design phase (conceptual/preliminary/detailed) or single disciplinary optimization (structural/thermal/daylighting/energy) spanning across multiple phases. Complexity in changing the optimization setup as the design progresses through subsequent phases, interoperability issues between modeling and physics-based analysis tools used at later stages, and the lack of an appropriate level of design detail to get meaningful results from these sophisticated analysis tools are few challenges that limit multi-phase multidisciplinary design optimization (MDO) in the AEC field. Here this paper proposes a computational building design platform leveraging concurrent engineering techniques such as interactive problem structuring, simulation-based optimization using meta models for energy and daylighting (machine learning based) and tradespace visualization. The proposed multi-phase concurrent MDO framework is demonstrated by using it to design and optimize a sample office building for energy and daylighting objectives across multiple phases. Furthermore, limitations of the proposed framework and future avenues of research are listed.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Biased degenerate ground-state sampling of small Ising models with converged quantum approximate optimization algorithm

The quantum alternating operator ansatz, a generalization of the quantum approximate optimization algorithm (QAOA), is a quantum algorithm used for approximately solving combinatorial optimization problems. QAOA typically uses the transverse field mixer as the driving Hamiltonian. One of the interesting properties of the transverse field driving Hamiltonian is that it results in nonuniform sampling of degenerate ground states of optimization problems. In this study, we numerically examine the fair sampling properties of the transverse field mixer QAOA, and Grover mixer QAOA (GM-QAOA), which provides theoretical guarantees of fair sampling of degenerate optimal solutions, up to a large enough p such that the mean expectation value converges to an optimal approximation ratio of 1. This comparison is performed with high-quality heuristically computed, but not necessarily optimal, QAOA angles, which give strictly monotonically improving solution quality as p increases. These angles are computed using the Julia based numerical simulation software JuliQAOA. Fair sampling of degenerate ground states is quantified using the Shannon entropy of the ground-state amplitudes distribution. The fair sampling properties are reported on several quantum signature Hamiltonians from previous quantum annealing fair sampling studies. Small random fully connected spin glasses are shown, which exhibit exponential suppression of some degenerate ground states with transverse field mixer QAOA. The transverse field mixer QAOA simulations show that some problem instances clearly saturate the Shannon entropy of 0 with a maximally biased distribution that occurs when the learning converges to an approximation ratio of 1 while other problem instances never deviate from a maximum Shannon entropy (uniform distribution) at any p step. Published by the American Physical Society 2025

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Demonstrating solarpilot ’s Python Application Programmable Interface Through Heliostat Optimal Aimpoint Strategy Use Case

solarpilot is a software package that generates solar field layouts and characterizes the optical performance of concentrating solar power (CSP) tower systems. solarpilot was developed by the National Renewable Energy Laboratory (NREL) as a stand-alone desktop application but has also been incorporated into NREL’s System Advisor Model (SAM) in a simplified format. Prior means for user interaction with solarpilot have included the application’s graphical interface, the SAM routines with limited configurability, and through a built-in scripting language called “LK.” This article presents a new, full-featured, python-based application programmable interface (API) for solarpilot, which we hereafter refer to as CoPylot. CoPylot enables python users to perform detailed CSP tower analysis utilizing either the Hermite expansion technique (analytical) or the SolTrace ray-tracing engine. CoPylot’s enables CSP researchers to perform analysis that was previously not possible through solarpilot’s existing interfaces. This article discusses the capabilities of CoPylot and presents a use case wherein we populate a model that obtains optimal solar field aiming strategies.

14 SOLAR ENERGY↗

Automatic Calibration of a Geomechanical Model from Sparse Data for Estimating Stress in Deep Geological Formations

Summary In this study, we demonstrate geomechanical modeling with fully automatic parameter calibration to estimate the full geomechanical stress fields of a prospective US carbon dioxide (CO2) storage site, based on sparse measurement data. The goal is to compute full stress tensor field estimates (principal stresses and orientations) that are maximally compatible with observations within the constraints of the model assumptions, thereby extending pointwise, incomplete partial stress measurement to a simulated full formation stress field, as well as a rough assessment of the associated error. We use the Perch site, located in Otsego County, Michigan, USA, as our case study. The input data consist of partial stress tensor information inferred from in-situ borehole tests, geophysical well logs, and processing of seismic data. A static earth model (SEM) of the site was developed, and geomechanical simulation functionality of the open-source MATLAB Reservoir Simulation Toolbox (MRST) was used to model the stress field. Adjoint-based nonlinear optimization was used to adjust boundary conditions and material properties to calibrate simulated results of observations. Results were interpreted through a Bayesian framework. The focus of this paper is to demonstrate how the fully automatic calibration procedure works and discuss the results obtained; it does not attempt a detailed analysis of the stress field in the context of the proposed CO2 storage initiatives. Our work is part of a larger effort to noninvasively determine in-situ stresses in deep formations considered for CO2 storage. Guided by previously published research on geomechanical model calibration, our work presents a novel calibration approach supporting a potentially large number of linear or nonlinear calibration parameters to produce results optimally agreeing with available measurements and thus extend partial pointwise estimates to full tensor fields compatible with the physics of the site.

Engineering↗

Using Weather-Based Irrigation Scheduling to Optimize Red Cabbage Production

A replicated field trial was performed on a Chualar sandy loam in California’s Salinas Valley during 2020 to investigate the yield response of drip-irrigated red cabbage to applied water volume. The crop was transplanted on 29-April and established with approximately 4 inches of water uniformly applied by overhead sprinklers. At 22 days after transplanting (DAT), five drip-irrigation treatments were established at 50, 75, 100, 125, and 150% of estimated daily crop evapotranspiration (ETc). The treatments were replicated 6 times following a randomized complete block design. The 100% crop water requirement was specified by CropManage, an irrigation scheduling application that combines a crop coefficient approach with reference evapotranspiration data from the California Irrigation Management Information System. The crop was irrigated 3 times per week. Nitrogen fertilizer, totaling 320 lbs/ac, was applied through the drip system once per week. Commercial carton yields were evaluated 85 DAT. The 100% ETc treatment received a total of 18.3 inches of water including sprinkler establishment and had the highest yield at 57 tons/ac, while the 50% treatment (11.5 inches) yielded a low of 32 tons/ac. For reference, average applied water reported for this crop on the Central Coast is about 22.5 inches by way of a variety of irrigation methods including drip, sprinkler, and furrow. Aboveground biomass was evaluated 91 DAT. The 100% treatment had the highest fresh (105 tons/ac) and dry (7.7 tons/ac) biomass yield. Commercial bulk yields at 98 DAT and were maximized by 20-24 inches of water (100%, 125% treatments) and ranged from a high of 67 tons/ac for 125% ETc treatment (24.3 inches of water) to 35 tons/ac for the 50% treatment (12.6 inches). The results demonstrated that yield and quality targets for this crop can be met by drip irrigation, and CropManage is an effective decision support tool for evaluating crop water requirements based on weather data.

Weather-Based↗