Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “explainability”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 397 records · Page 22
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Soil moisture thresholds explain a shift from light-limited to water-limited sap velocity in the Central Amazon during the 2015–16 El Niño drought

Transpiration is often considered to be light- but not water-limited in humid tropical rainforests due to abundant soil water, even during the dry seasons. The record-breaking 2015–16 El Niño drought provided a unique opportunity to examine whether transpiration is constrained by water under severe lack of rainfall. We measured sap velocity, soil water content, and meteorological variables in an old-growth upland forest in the Central Amazon throughout the 2015–16 drought. We found a rapid decline in sap velocity (-38 ± 21%, mean ± SD.) and in its temporal variability (-88%) during the drought compared to the wet season. Such changes were accompanied by a marked decline in soil moisture and an increase in temperature and vapor pressure deficit. Sap velocity was largely limited by net radiation during the wet and normal dry seasons; however, it shifted to be primarily limited by soil moisture during the drought. The threshold in which sap velocity became dominated by soil moisture was at 0.33 m 3 m -3 (around -150 kPa in soil matric potential), below which sap velocity dropped steeply. Our study provides evidence for a soil water threshold on transpiration in a moist tropical forest, suggesting a shift from light limitation to water limitation under future climate characterized by increased temperature and an increased frequency, intensity, duration and extent of extreme drought events.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2011

CAN PLASMA EXPANSION EXPLAIN THE OBSERVED ACCELERATION OF Ne{sup 7+} IONS IN A CORONAL MAGNETIC FUNNEL?

Tu et al. measured outflow of Ne{sup 7+} at a height of 20 Mm above the photosphere demonstrating that the solar wind originates in coronal funnels footed in the chromospheric magnetic networks. We suggest that when the bottom of a coronal flux tube is populated by the chromospheric plasma consisting of protons as the major ions, Ne{sup 7+} as minor ions, and heated electrons in the magnetic networks, large-scale plasma expansion could accelerate the Ne{sup 7+} ions to a velocity {approx}10 km s{sup -1} at a height {approx} 20 Mm as measured. Two scenarios are discussed here, one with the bulk heating of the electrons to a temperature T{sub e} > 64 eV and another with a small fraction of the electrons heated to high temperatures T{sub eh} > 158 eV, appearing as an energetic tail to the electrons' velocity distribution function. In the former scenario, the expansion produces weak ambipolar electric fields distributed along the entire length of the funnel. In the latter one the electric field is concentrated in a double layer. The electric fields accelerate the ions against the solar gravity. The required electron temperatures in the above scenarios are large enough to ionize neon atoms yielding Ne{sup 7+}.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2013

EXPLAINING THE SUPERNOVA IMPOSTOR SN 2009ip AS MERGERBURST

We propose that the energetic major outburst of the supernova (SN) impostor SN 2009ip in 2012 September (outburst 2012b) was a mergerburst event, where two massive stars merged. The previous outbursts of 2009 and 2011 might have occurred near periastron passages of the binary system prior to the merger, in a similar manner to the luminosity peaks in the 19th century Great Eruption of the massive binary system Eta Carinae. The major 2012b outburst and the 2012a pre-outburst resemble the light curve of the mergerburst event V838 Mon. A merger of an evolved star with a mass of M{sub 1} {approx} 60-100 M{sub Sun} and a secondary main-sequence star of M{sub 2} {approx} 0.2-0.5 M{sub 1} can account for the energy of SN 2009ip and for the high velocities of the ejected gas. The ejected nebula is expected to have a non-spherical structure, e.g., bipolar or even a more complicated morphology.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

CAN STELLAR MIXING EXPLAIN THE LACK OF TYPE Ib SUPERNOVAE IN LONG-DURATION GAMMA-RAY BURSTS?

The discovery of supernovae associated with long-duration gamma-ray burst observations is primary evidence that the progenitors of these outbursts are massive stars. One of the principle mysteries in understanding these progenitors has been the fact that all of these gamma-ray-burst-associated supernovae are Type Ic supernovae with no evidence of helium in the stellar atmosphere. Many studies have focused on whether or not this helium is simply hidden from spectral analyses. In this Letter, we show results from recent stellar models using new convection algorithms based on our current understanding of stellar mixing. We demonstrate that enhanced convection may lead to severe depletion of stellar helium layers, suggesting that the helium is not observed simply because it is not in the star. We also present light curves and spectra of these compact helium-depleted stars compared to models with more conventional helium layers.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

RAPID DUST FORMATION IN NOVAE: THE SPEED CLASS—FORMATION TIMESCALE CORRELATION EXPLAINED

Observations show that the time of onset of dust formation in classical novae depends strongly on their speed class, with dust typically taking longer to form in slower novae. Using empirical relationships between speed class, luminosity and ejection velocity, it can be shown that dust formation timescale is expected to be essentially independent of speed class. However, following a nova outburst the spectrum of the central hot source evolves, with an increasing proportion of the radiation being emitted short-ward of the Lyman limit. The rate at which the spectrum evolves also depends on the speed class. We have therefore refined the simple model by assuming photons at energies higher than the Lyman limit are absorbed by neutral hydrogen gas internal to the dust formation sites, therefore preventing these photons reaching the nucleation sites. With this refinement the dust formation timescale is theoretically dependent on speed class and the results of our theoretical modification agree well with the observational data. We consider two types of carbon-based dust, graphite and amorphous carbon, with both types producing similar relationships. Our results can be used to predict when dust will form in a nova of a given speed class and hence when observations should optimally be taken to detect the onset of dust formation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

HEAD-ON COLLISIONS OF WHITE DWARFS IN TRIPLE SYSTEMS COULD EXPLAIN TYPE Ia SUPERNOVAE

Type Ia supernovae (SNe Ia), thermonuclear explosions of carbon-oxygen white dwarfs (CO-WDs), are currently the best cosmological ''standard candles'', but the triggering mechanism of the explosion is unknown. It was recently shown that the rate of head-on collisions of typical field CO-WDs in triple systems may be comparable to the SNe Ia rate. Here we provide evidence supporting a scenario in which the majority of SNe Ia are the result of such head-on collisions of CO-WDs. In this case, the nuclear detonation is due to a well understood shock ignition, devoid of commonly introduced free parameters such as the deflagration velocity or transition to detonation criteria. By using two-dimensional hydrodynamical simulations with a fully resolved ignition process, we show that zero-impact-parameter collisions of typical CO-WDs with masses 0.5-1 M {sub ☉} result in explosions that synthesize {sup 56}Ni masses in the range of ∼0.1-1 M {sub ☉}, spanning the wide distribution of yields observed for the majority of SNe Ia. All collision models yield the same late-time (≳ 60 days since explosion) bolometric light curve when normalized by {sup 56}Ni masses (to better than 30%), in agreement with observations. The calculated widths of the {sup 56}Ni-mass-weighted line-of-sight velocity distributions are correlated with the calculated {sup 56}Ni yield, agreeing with the observed correlation. The strong correlation, shown here for the first time, between {sup 56}Ni yield and total mass of the colliding CO-WDs (insensitive to their mass ratio), is suggestive as the source for the continuous distribution of observed SN Ia features, possibly including the Philips relation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

EXPLAINING THE COEXISTENCE OF LARGE-SCALE AND SMALL-SCALE MAGNETIC FIELDS IN FULLY CONVECTIVE STARS

Despite the lack of a shear-rich tachocline region, low-mass fully convective (FC) stars are capable of generating strong magnetic fields, indicating that a dynamo mechanism fundamentally different from the solar dynamo is at work in these objects. We present a self-consistent three-dimensional model of magnetic field generation in low-mass FC stars. The model utilizes the anelastic magnetohydrodynamic equations to simulate compressible convection in a rotating sphere. A distributed dynamo working in the model spontaneously produces a dipole-dominated surface magnetic field of the observed strength. The interaction of this field with the turbulent convection in outer layers shreds it, producing small-scale fields that carry most of the magnetic flux. The Zeeman–Doppler-Imaging technique applied to synthetic spectropolarimetric data based on our model recovers most of the large-scale field. Our model simultaneously reproduces the morphology and magnitude of the large-scale field as well as the magnitude of the small-scale field observed on low-mass FC stars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Photosynthetic decline in aging perennial grass is not fully explained by leaf nitrogen

Abstract Aging in perennial plants is traditionally observed in terms of changes in end-of-season biomass; however, the driving phenological and physiological changes are poorly understood. We found that 3-year-old (mature) stands of the perennial grass Miscanthus×giganteus had 19–30% lower Anet than 1-year-old M.×giganteus (juvenile) stands; 10–34% lower maximum carboxylation rates of Rubisco and 34% lower light-saturated Anet (Asat). These changes could be related to nitrogen (N) limitations, as mature plants were larger and had 14–34% lower leaf N on an area basis (Na) than juveniles. However, N fertilization restored Na to juvenile levels but compensated only 50% of the observed decline in leaf photosynthesis with age. Comparison of leaf photosynthesis per unit of leaf N (PNUE) showed that mature stands had at least 26% lower PNUE than juvenile stands across all N fertilization rates, suggesting that other factors, besides N, may be limiting photosynthesis in mature stands. We hypothesize that sink limitations in mature stands could be causing feedback inhibition of photosynthesis which is associated with the age-related decline in photosynthesis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria

Prokaryotic genomes are often considered to be mosaics of genes that do not necessarily share the same evolutionary history due to widespread horizontal gene transfers (HGTs). Consequently, representing evolutionary relationships of prokaryotes as bifurcating trees has long been controversial. However, studies reporting conflicts among gene trees derived from phylogenomic data sets have shown that these conflicts can be the result of artifacts or evolutionary processes other than HGT, such as incomplete lineage sorting, low phylogenetic signal, and systematic errors due to substitution model misspecification. Here, we present the results of an extensive exploration of phylogenetic conflicts in the cyanobacterial order Nostocales, for which previous studies have inferred strongly supported conflicting relationships when using different concatenated phylogenomic data sets. We found that most of these conflicts are concentrated in deep clusters of short internodes of the Nostocales phylogeny, where the great majority of individual genes have low resolving power. We then inferred phylogenetic networks to detect HGT events while also accounting for incomplete lineage sorting. Our results indicate that most conflicts among gene trees are likely due to incomplete lineage sorting linked to an ancient rapid radiation, rather than to HGTs. Moreover, the short internodes of this radiation fit the expectations of the anomaly zone, i.e., a region of the tree parameter space where a species tree is discordant with its most likely gene tree. In this work, we demonstrated that concatenation of different sets of loci can recover up to 17 distinct and well-supported relationships within the putative anomaly zone of Nostocales, corresponding to the observed conflicts among well-supported trees based on concatenated data sets from previous studies. Our findings highlight the important role of rapid radiations as a potential cause of strongly conflicting phylogenetic relationships when using phylogenomic data sets of bacteria. We propose that polytomies may be the most appropriate phylogenetic representation of these rapid radiations that are part of anomaly zones, especially when all possible genomic markers have been considered to infer these phylogenies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Preserving isohydricity: vertical environmental variability explains Amazon forest water-use strategies

Abstract Increases in hydrological extremes, including drought, are expected for Amazon forests. A fundamental challenge for predicting forest responses lies in identifying ecological strategies which underlie such responses. Characterization of species-specific hydraulic strategies for regulating water-use, thought to be arrayed along an ‘isohydric–anisohydric’ spectrum, is a widely used approach. However, recent studies have questioned the usefulness of this classification scheme, because its metrics are strongly influenced by environments, and hence can lead to divergent classifications even within the same species. Here, we propose an alternative approach positing that individual hydraulic regulation strategies emerge from the interaction of environments with traits. Specifically, we hypothesize that the vertical forest profile represents a key gradient in drought-related environments (atmospheric vapor pressure deficit, soil water availability) that drives divergent tree water-use strategies for coordinated regulation of stomatal conductance (gs) and leaf water potentials (ΨL) with tree rooting depth, a proxy for water availability. Testing this hypothesis in a seasonal eastern Amazon forest in Brazil, we found that hydraulic strategies indeed depend on height-associated environments. Upper canopy trees, experiencing high vapor pressure deficit (VPD), but stable soil water access through deep rooting, exhibited isohydric strategies, defined by little seasonal change in the diurnal pattern of gs and steady seasonal minimum ΨL. In contrast, understory trees, exposed to less variable VPD but highly variable soil water availability, exhibited anisohydric strategies, with fluctuations in diurnal gs that increased in the dry season along with increasing variation in ΨL. Our finding that canopy height structures the coordination between drought-related environmental stressors and hydraulic traits provides a basis for preserving the applicability of the isohydric-to-anisohydric spectrum, which we show here may consistently emerge from environmental context. Our work highlights the importance of understanding how environmental heterogeneity structures forest responses to climate change, providing a mechanistic basis for improving models of tropical ecosystems.

Forestry↗
DOE OSTI2012

A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers

Genes regulated by the same miRNA can be discovered by virtue of their coexpression at the transcriptional level and the presence of a conserved miRNA-binding site in their 39 UTRs. Using this principle we have integrated the three best performing and complementary algorithms into a framework for inference of regulation by miRNAs (FIRM) from sets of coexpressed genes. We demonstrate the utility of FIRM by inferring a cancer–miRNA regulatory network through the analysis of 2240 gene coexpression signatures from 46 cancers. By analyzing this network for functional enrichment of known hallmarks of cancer we have discovered a subset of 13 miRNAs that regulate oncogenic processes across diverse cancers. We have performed experiments to test predictions from this miRNA-regulatory network to demonstrate that miRNAs of the miR-29 family (miR-29a, miR-29b, and miR-29c) regulate specific genes associated with tissue invasion and metastasis in lung adenocarcinoma. Further, we highlight the specificity of using FIRM inferences to identify miRNA regulated genes by experimentally validating that miR-767-5p, which partially shares the miR-29 seed sequence, regulates only a subset of miR-29 targets. By providing mechanistic linkage between miRNA dysregulation in cancer, their binding sites in the 39UTRs of specific sets of coexpressed genes, and their associations with known hallmarks of cancer, FIRM, and the inferred cancer miRNA-regulatory network will serve as a powerful public resource for discovery of potential cancer biomarkers.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Boomerang mechanism explaining the excess radio background

We propose a boomerang mechanism for the explanation of the excess radio background detected by ARCADE 2. In an early stage of the Universe, at a temperature 𝑇 in the range ∼ 0.1 keV−⁢1 MeV, a fraction of relic neutrinos is resonantly converted into dark neutrinos by mixing induced by a preexisting lepton asymmetry. Dark neutrinos decay much later into a dark-standard photon state and a dark fermion, with a lifetime longer than the age of the Universe, as required by a solution to the excess radio background. This scenario circumvents the upper bound on the neutrino magnetic moment but still implies a testable lower bound.

Dev, P. S. Bhupal [Washington Univ., St. Louis, MO↗