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At least 397 records · Page 22

CryoEM Structures of the Nitrogenase Complex During Catalytic Turnover

The enzyme nitrogenase couples adenosine triphosphate (ATP) hydrolysis to the multi-electron reduction of atmospheric dinitrogen into ammonia. Despite extensive research, the mechanistic details of ATP-dependent energy transduction and dinitrogen reduction by nitrogenase are not well understood, requiring new strategies to monitor its structural dynamics during catalytic action. Here we report the cryogenic electron microscopic interrogation of the nitrogenase complex under enzymatic turnover conditions, which has enabled the structural characterization of the nitrogenase reaction intermediates at high resolution for the first time. Our structures show that asymmetry governs all aspects of nitrogenase mechanism including ATP hydrolysis, protein-protein interactions, and catalysis. Furthermore, they reveal several previously unobserved, mechanistically relevant conformational changes near the catalytic iron-molybdenum cofactor that are correlated with the nucleotide-hydrolysis state of the enzyme.

Hannah L. Rutledge↗

Assimilative modeling of low latitude ionosphere

In this paper we present an observation system simulation experiment for modeling low-latitude ionosphere using a 3-dimensional (3-D) global assimilative ionospheric model (GAIM). The experiment is conducted to test the effectiveness of GAIM with a 4-D variational approach (4DVAR) in estimation of the ExB drift and thermospheric wind in the magnetic meridional planes simultaneously for all longitude or local time sectors. The operational Global Positioning System (GPS) satellites and the ground-based global GPS receiver network of the International GPS Service are used in the experiment as the data assimilation source. 'The optimization of the ionospheric state (electron density) modeling is performed through a nonlinear least-squares minimization process that adjusts the dynamical forces to reduce the difference between the modeled and observed slant total electron content in the entire modeled region. The present experiment for multiple force estimations reinforces our previous assessment made through single driver estimations conducted for the ExB drift only.

data assimilation↗

Electron acceleration to high energies at quasi-parallel shock waves in the solar corona

In the solar corona shock waves are generated by flares and/or coronal mass ejections. They manifest themselves in solar type 2 radio bursts appearing as emission stripes with a slow drift from high to low frequencies in dynamic radio spectra. Their nonthermal radio emission indicates that electrons are accelerated to suprathermal and/or relativistic velocities at these shocks. As well known by extraterrestrial in-situ measurements supercritical, quasi-parallel, collisionless shocks are accompanied by so-called SLAMS (short large amplitude magnetic field structures). These SLAMS can act as strong magnetic mirrors, at which charged particles can be reflected and accelerated. Thus, thermal electrons gain energy due to multiple reflections between two SLAMS and reach suprathermal and relativistic velocities. This mechanism of accelerating electrons is discussed for circumstances in the solar corona and may be responsible for the so-called 'herringbones' observed in solar type 2 radio bursts.

Mann, G.↗

A possible energy source to power stable auroral red arcs - Precipitating electrons

Results of coincident measurements by ground-based photometers and the low-altitude plasma instrument on board the Dynamics Explorer 2 satellite are presented that demonstrate the association of precipitating low-energy electrons with stable auroral red (SAR) arcs. A search of available data has yielded 23 instances of DE 2 overflights during the presence of SAR arcs being monitored by the photometers. For each case, downward fluxes of electrons are found to be enhanced along field lines penetrating the arcs in relation to regions both north and south of the features. Modeling of the atmospheric response to these influxes indicates that these electrons can represent a major source of the energy required to establish temperature profiles within the ionospheric electron gas that are sufficient to produce the recorded 6300-A emission rates. The sensitivity of these results to uncertainties of the assumed spacecraft potential and thermospheric composition has been investigated and found to be important, but does not alter the conclusion that precipitating electrons are a fundamental link in the production of SAR arcs.

Slater, D. W.↗

Large Amplitude Whistler Waves and Electron Acceleration in the Earth's Radiation Belts: A Review of STEREO and Wind Observations

One of the critical problems for understanding the dynamics of Earth's radiation belts is determining the physical processes that energize and scatter relativistic electrons. We review measurements from the Wind/Waves and STEREO S/Waves waveform capture instruments of large amplitude whistler-mode waves. These observations have provided strong evidence that large amplitude (100s mV/m) whistler-mode waves are common during magnetically active periods. The large amplitude whistlers have characteristics that are different from typical chorus. They are usually nondispersive and obliquely propagating, with a large longitudinal electric field and significant parallel electric field. We will also review comparisons of STEREO and Wind wave observations with SAMPEX observations of electron microbursts. Simulations show that the waves can result in energization by many MeV and/or scattering by large angles during a single wave packet encounter due to coherent, nonlinear processes including trapping. The experimental observations combined with simulations suggest that quasilinear theoretical models of electron energization and scattering via small-amplitude waves, with timescales of hours to days, may be inadequate for understanding radiation belt dynamics.

Cattell, Cynthia↗

Fast Plasma Investigation for Magnetospheric Multiscale

The Fast Plasma Investigation (FPI) was developed for flight on the Magnetospheric Multiscale (MMS) mission to measure the differential directional flux of magnetospheric electrons and ions with unprecedented time resolution to resolve kinetic-scale plasma dynamics. This increased resolution has been accomplished by placing four dual 180-degree top hat spectrometers for electrons and four dual 180-degree top hat spectrometers for ions around the periphery of each of four MMS spacecraft. Using electrostatic field-of-view deflection, the eight spectrometers for each species together provide 4pi-sr-field-of-view with, at worst, 11.25-degree sample spacing. Energy/charge sampling is provided by swept electrostatic energy/charge selection over the range from 10 eVq to 30000 eVq. The eight dual spectrometers on each spacecraft are controlled and interrogated by a single block redundant Instrument Data Processing Unit, which in turn interfaces to the observatory's Instrument Suite Central Instrument Data processor. This paper described the design of FPI, its ground and in-flight calibration, its operational concept, and its data products.

Pollock, C.↗

Theoretical determination of chemical rate constants using novel time-dependent methods

The work completed within the grant period 10/1/91 through 12/31/93 falls primarily in the area of reaction dynamics using both quantum and classical mechanical methodologies. Essentially four projects have been completed and have been or are in preparation of being published. The majority of time was spent in the determination of reaction rate coefficients in the area of hydrocarbon fuel combustion reactions which are relevant to NASA's High Speed Research Program (HSRP). These reaction coefficients are important in the design of novel jet engines with low NOx emissions, which through a series of catalytic reactions contribute to the deterioration of the earth's ozone layer. A second area of research studied concerned the control of chemical reactivity using ultrashort (femtosecond) laser pulses. Recent advances in pulsed-laser technologies have opened up a vast new field to be investigated both experimentally and theoretically. The photodissociation of molecules adsorbed on surfaces using novel time-independent quantum mechanical methods was a third project. And finally, using state-of-the-art, high level ab initio electronic structure methods in conjunction with accurate quantum dynamical methods, the rovibrational energy levels of a triatomic molecule with two nonhydrogen atoms (HCN) were calculated to unprecedented levels of agreement between theory and experiment.

Dateo, Christopher E.↗

Direct Observation of Electron Distributions Inside Millisecond Duration Electron Holes

Despite the importance of millisecond duration spatial structures [chorus wave nonlinearity or time domain structures (TDS)] to plasma dynamics, there have been no direct observations of the generation and interaction of these waves and TDS with electrons at the millisecond timescale required for their understanding. Through superposition of 0.195 ms Magnetospheric Multiscale Satellite electron measurements inside 37 superposed, millisecond duration electron holes, the first observations of electron spectra and pitch angle distributions on a submillisecond timescale have been obtained. They show that keV electrons inside the superposed electron hole are accelerated by several hundred volts and that the spectrum of electrons inside the electron hole contain several maxima and minima that are explained by a model of electron energy changes on entering the holes. We report the first observation of trapped electrons inside the TDS, in accordance with the theoretical requirement that such electrons must be present in order to form the phase space holes. Mechanisms of electron acceleration by electron holes (through perpendicular energy gain as the TDS moves into a converging magnetic field) and scattering (due to the perpendicular electric field) are discussed.

Mozer, F. S.↗

Auroral plasma transport processes in the presence of kV potential structures

We have simulated plasma transport processes in the presence of a quasi-two-dimensional current filament, that generated kV potential structure in the auroral region. The simulation consists of a set of one-dimensional flux tube simulations with different imposed time-dependent, field-aligned currents. The model uses the 16 moment system of equations and simultaneously solves coupled continuity and momentum equations and equations describing the transport along the magnetic field lines of parallel and perpendicular thermal energy and heat flows for each species. The lower end of the simulation is at an altitude of 800 km, in the collisional topside ionosphere, while the upper end is at 10 R(sub E) in the magnetosphere. The plasma consists of hot electrons and protons of magnetospheric origin and low-energy electrons, protons, and oxygen ions of ionospheric origin. The dynamical interaction of the individual current filaments with ionospheric and magnetospheric plasma generates a potential structure in the horizontal direction and kilovolt field-aligned potential drops along the field lines. The side-by-side display exhibits the evolution of the implied potential structure in the horizontial direction. In the presence of this potential structure and parallel electric field ionospheric plasma density is depleted and velocity is reduced, while density enhancement and increased velocity is observed in magnetospheric plasma. The ionospheric and magnetospheric electron temperatures increase below 2 R(sub E) due to magnetic mirror force on converging geomagnetic field lines. The primary cross-field motion produced by the horizontal E field (E x B drift) is perpendicular to both of the significant spatial directions and is thus ignorable in this geometry. The effects of other cross-field drift processes are discussed. The simulation thus provides insight into the dynamical evolution of two-dimensional potential structures driven by an imposed finite width, field-aligned current profile.

Ganguli, Supriya B.↗

Dynamic SEM wear studies of tungsten carbide cermets

Dynamic friction and wear experiments were conducted in a scanning electron microscope. The wear behavior of pure tungsten carbide and composite with 6 and 15 weight percent cobalt binder was examined. Etching of the binder was done to selectively determine the role of the binder in the wear process. Dynamic experiments were conducted as the WC and bonded WC cermet surfaces were transversed by a 50 micron radiused diamond stylus. These studies show that the predominant wear process in WC is fracture initiated by plastic deformation. The wear of the etched cermets is similar to pure WC. The presence of the cobalt binder reduces both friction and wear. The cementing action of the cobalt reduces granular separation and promotes a dense polished layer because of its low shear strength film-forming properties. The wear debris generated from unetched surface is approximately the same composition as the bulk.

Brainard, W. A.↗

The Structural Properties of Vapor Deposited Water Ice and Astrophysical Implications

Films of vapor deposited water ice at low temperature (T<30 K) show a number of interesting structural changes during a gradual warmup. We would like to talk about the structure of the low temperature high density amorphous form of water ice, the process of crystallization, and some recent work on the morphological changes of water ice films at high temperature. The studies of the high density amorphous form are from in-situ electron microscopy as well as numerical simulations of molecular dynamics and have lead to new insights into the physical distinction between this high density amorphous form and the low density amorphous form. For the process of crystallization, we propose a model that describes the crystallization of water ice from the amorphous phase to cubic ice in terms of the nucleation of small domains in the ice. This model agrees well with the behavior of water ice in our electron microscopy studies and finds that pure water above the glass transition is a strong liquid. In more recent work, we have concentrated on temperatures above the crystallization temperature and we find interesting morphological changes related to the decrease in viscosity of the amorphous component in the cubic crystalline regime. Given enough time, we would like to put these results in an astrophysical context and discuss some observed features of the frost on interstellar grains and the bulk ice in comets.

Jenniskens, P.↗

Numerical Studies of the Non-linear Vlasov Equation

The subject of this dissertation is the numerical integration of the initial-value problem for the non-linear Vlasov equation. The Vlasov equation is used to describe the dynamics of a "collisionless", one-dimensional, classical electron gas confined between two perfectly reflecting boundaries. Only the long-range Coulomb interactions of the electrons are considered; effects associated with the discrete structure are neglected. The numerical results obtained for non-linear Landau damping compare well with similar results obtained by Knorr. A general statement of the results on stable initial conditions is: As the degree of non-linearity of the initial conditions is increased, the deviation from linear Landau damping appears sooner and is more severe. In some cases damping was observed to cease. Curves showing the time dependence of the damping decrement are derived and compared with predictions of non-linear theories. New results obtained in this study include the observation that for strongly non-linear cases, the damping of the electric field causes an initially Maxwellian fo (v, O) to develop a peak in the neighborhood of the phase velocity; strong growth of the second harmonic is seen after fo (v, t) develops such a peak. Also new in this study is the interpretation of the development of a certain class of strongly unstable initial conditions as approaching an inhomogeneous equilibrium.

NUMERICAL INTEGRATION↗

Dynamic SEM wear studies of tungsten carbide cermets

Dynamic friction and wear experiments were conducted in a scanning electron microscope. The wear behavior of pure tungsten carbide and composite with 6 and 15 weight percent cobalt binder was examined, and etching of the binder was done to selectively determine the role of the binder in the wear process. Dynamic experiments were conducted as the tungsten carbide (WC) and bonded WC cermet surfaces were transversed by a 50 micron radiused diamond stylus. These studies show that the predominant wear process in WC is fracture initiated by plastic deformation, and the wear of the etched cermets is similar to pure WC. The presence of the cobalt binder reduces both friction and wear. The cementing action of the cobalt reduces granular separation, and promotes a dense polished layer because of its low shear strength film-forming properties. The wear debris generated from unetched surface is approximately the same composition as the bulk.

Brainard, W. A.↗

Structure of the magnetopause rotational discontinuity

A model is developed for the rotational discontinuities associated with the reconnection configuration on the dayside magnetopause and the energy transfer process in the tail magnetopause. The model, in which the ion dynamics is described by the fluid equations and electrons are assumed to move adiabatically along the magnetic field lines, is valid for a rotational discontinuity with a thickness greater than a few ion gyroradii. It is shown, by the inclusion of self-consistency for trapped electrons, that (1) the trapped electron density profile is uniquely related to the rate of angular rotation of the magnetic field, and (2) the sense of magnetic field rotation is determined by the ratio of the normal and tangential components of the magnetic field. It is found that the electron polarization of magnetopause rotational discontinuities should be in agreement with satellite observations.

Lee, L. C.↗

Stochastic three-wave interaction in flaring solar loops

A model is proposed for the dynamic structure of high-frequency microwave bursts. The dynamic component is attributed to beams of precipitating electrons which generate electrostatic waves in the upper hybrid branch. Coherent upconversion of the electrostatic waves to electromagnetic waves produces an intrinsically stochastic emission component which is superposed on the gyrosynchrotron continuum generated by stably trapped electron fluxes. The role of the density and temperature of the ambient plasma in the wave growth and the transition of the three wave upconversion to stochastic, despite the stationarity of the energy source, are discussed in detail. The model appears to reproduce the observational features for reasonable parameters of the solar flare plasma.

Vlahos, L.↗

ISEE 3 observations during a plasma sheet encounter at 140 earth radii - Evidence for enhancement of reconnection at the distant neutral line

A plasma sheet encounter of the ISEE-3 spacecraft in the distant tail at 140 earth radii on March 20, 1983 is studied using magnetic field, energetic particle, and plasma electron data sets. The H-component magnetograms from auroral magnetometer stations, intensity-time profiles, high resolution magnetic field measurements, and electron and proton angular distributions are analyzed. The dynamics of the plasma sheet displayed by the strong tailward and earthward directed ion beams, large northward and southward magnetic fields excursions, and short tailward and earthward plasma flows are described.

Scholer, M.↗