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At least 397 records · Page 22

Genomic and phenotypic comparison of two variants of multidrug-resistant Salmonella enterica serovar Heidelberg isolated during the 2015–2017 multi-state outbreak in cattle

Salmonella enterica subspecies enterica serovar Heidelberg (Salmonella Heidelberg) has caused several multistate foodborne outbreaks in the United States, largely associated with the consumption of poultry. However, a 2015–2017 multidrug-resistant (MDR) Salmonella Heidelberg outbreak was linked to contact with dairy beef calves. Traceback investigations revealed calves infected with outbreak strains of Salmonella Heidelberg exhibited symptoms of disease frequently followed by death from septicemia. To investigate virulence characteristics of Salmonella Heidelberg as a pathogen in bovine, two variants with distinct pulse-field gel electrophoresis (PFGE) patterns that differed in morbidity and mortality during the multistate outbreak were genotypically and phenotypically characterized and compared. Strain SX 245 with PFGE pattern JF6X01.0523 was identified as a dominant and highly pathogenic variant causing high morbidity and mortality in affected calves, whereas strain SX 244 with PFGE pattern JF6X01.0590 was classified as a low pathogenic variant causing less morbidity and mortality. Comparison of whole-genome sequences determined that SX 245 lacked ~200 genes present in SX 244, including genes associated with the IncI1 plasmid and phages; SX 244 lacked eight genes present in SX 245 including a second YdiV Anti-FlhC(2)FlhD(4) factor, a lysin motif domain containing protein, and a pentapeptide repeat protein. RNA-sequencing revealed fimbriae-related, flagella-related, and chemotaxis genes had increased expression in SX 245 compared to SX 244. Furthermore, SX 245 displayed higher invasion of human and bovine epithelial cells than SX 244. These data suggest that the presence and up-regulation of genes involved in type 1 fimbriae production, flagellar regulation and biogenesis, and chemotaxis may play a role in the increased pathogenicity and host range expansion of the Salmonella Heidelberg isolates involved in the bovine-related outbreak.

59 BASIC BIOLOGICAL SCIENCES↗

Sex comparisons in physiological and cognitive performance during hypoxic challenge

Within the tactical aviation community, human performance research lags in considering potential psychophysiological differences between male and female aviators due to little inclusion of females during the design and development of aircraft systems. A poor understanding of how male and female aviators differ with respect to human performance results in unknown potential sex differences on aeromedically relevant environmental stressors, perchance leading to suboptimal performance, safety, and health guidelines. For example, previous hypoxia studies have excluded female participants or lacked a sizeable sample to examine sex comparisons. As such, progress toward sensor development and improving hypoxia familiarization training are stunted due to limited knowledge of how individual differences, including sex, may or may not underlie hypoxia symptoms and performance impairment. Investigating sex differences bridges the gap between aerospace medicine and operational health, and addressing hypoxia is one of many facets yet to be studied. In the current study, we retrospectively examined N = 6 hypoxia studies with male-female participant samples (total, N = 189; male, n = 118; female, n = 71). We explored sex as a predictor of physiological response, sensory deficits, the severity of cognitive performance declines, and symptom manifestation via linear and binary logistic regression models. We found that the female sex predicted lower peripheral oxygen saturation and the likelihood of headache reporting in response to hypoxic challenge, yet explained little variance when combined with age and body mass index. The sensory and cognitive performance models did not converge, suggesting high intra-individual variability. Together, sex, age, and body mass index were not the most robust predictors in responses to hypoxic challenge; we cannot infer this for sensory deficits and cognitive performance within an experimentally induced hypoxic environment. The findings have implications for improving hypoxia familiarization training, monitoring sensor development, and emergency response and recovery protocols in case of a hypoxia occurrence suitable for all aircrew. We recommend continuing to elucidate the impact of sex and intrapersonal differences in hypoxia and other aeromedically relevant stressors in tactical aviation.

60 APPLIED LIFE SCIENCES↗

Tropopause Characteristics Based on Long-Term ARM Radiosonde Data: A Fine-Scale Comparison at the Extratropical SGP Site and Arctic NSA Site

The variations in the characteristics of the tropopause are sensitive indicators for the climate system and climate change. By using Atmospheric Radiation Measurement (ARM) radiosonde data that were recorded at the extratropical Southern Great Plains (SGP) and Arctic North Slope of Alaska (NSA) sites over an 18-year period (January 2003 to December 2020), this study performs a fine-scale comparison of the climatological tropopause features between these two sites that are characterized by different climates. The static stability increases rapidly above the tropopause at both sites, indicating the widespread existence of a tropopause inversion layer. The structures of both the tropopause inversion layer and the stability transition layer are more obvious at NSA than at SGP, and the seasonal variation trends of the tropopause inversion layer and stability transition layer are distinctly different between the two sites. A fitting method was used to derive the fitted tropopause height and tropopause sharpness (λ). Although this fitting method may determine a secondary tropopause rather than the primary tropopause when multiple tropopause heights are identified on one radiosonde profile, the fitted tropopause heights generally agree well with the observed tropopause heights. Broad tropopause sharpness values (λ > 2 km) occur more frequently at SGP than at NSA, resulting in a greater average tropopause sharpness at SGP (1.0 km) than at NSA (0.6 km). Significant positive trends are exhibited by the tropopause heights over the two sites, with rates of increase of 23.7 ± 6.5 m yr ⁻1 at SGP and 28.0 ± 4.0 m yr ⁻1 at NSA during the study period.

54 ENVIRONMENTAL SCIENCES↗

A Comparison between Invariant and Equivariant Classical and Quantum Graph Neural Networks

Machine learning algorithms are heavily relied on to understand the vast amounts of data from high-energy particle collisions at the CERN Large Hadron Collider (LHC). The data from such collision events can naturally be represented with graph structures. Therefore, deep geometric methods, such as graph neural networks (GNNs), have been leveraged for various data analysis tasks in high-energy physics. One typical task is jet tagging, where jets are viewed as point clouds with distinct features and edge connections between their constituent particles. The increasing size and complexity of the LHC particle datasets, as well as the computational models used for their analysis, have greatly motivated the development of alternative fast and efficient computational paradigms such as quantum computation. In addition, to enhance the validity and robustness of deep networks, we can leverage the fundamental symmetries present in the data through the use of invariant inputs and equivariant layers. In this paper, we provide a fair and comprehensive comparison of classical graph neural networks (GNNs) and equivariant graph neural networks (EGNNs) and their quantum counterparts: quantum graph neural networks (QGNNs) and equivariant quantum graph neural networks (EQGNN). The four architectures were benchmarked on a binary classification task to classify the parton-level particle initiating the jet. Based on their area under the curve (AUC) scores, the quantum networks were found to outperform the classical networks. However, seeing the computational advantage of quantum networks in practice may have to wait for the further development of quantum technology and its associated application programming interfaces (APIs).

Forestano, Roy T. (ORCID:0000000203552076)↗

A Comprehensive Loss Model and Comparison of AC and DC Boost Converters

DC microgrids have become a prevalent topic in research in part due to the expected superior efficiency of DC/DC converters compared to their AC/DC counterparts. Although numerous side-by-side analyses have quantified the efficiency benefits of DC power distribution, these studies all modeled converter loss based on product data that varied in component quality and operating voltage. To establish a fair efficiency comparison, this work derives a formulaic loss model of a DC/DC and an AC/DC PFC boost converter. These converters are modeled with identical components and an equivalent input and output voltage. Simulated designs with real components show AC/DC boost converters between 100 W to 500 W having up to 2.5 times more loss than DC/DC boost converters. Although boost converters represent a fraction of electronics in buildings, these loss models can eventually work toward establishing a comprehensive model-based full-building analysis.

42 ENGINEERING↗

A Comparison of Power Take-Off Architectures for Wave-Powered Reverse Osmosis Desalination of Seawater with Co-Production of Electricity

Several power take-off (PTO) architectures for wave-powered reverse osmosis (RO) desalination of seawater are introduced and compared based on the annual average freshwater production and the size of the components, which strongly relate to the costs of the system. The set of architectures compared includes a novel series-type PTO architecture not previously considered. These seawater hydraulic PTO architectures are composed of a WEC-driven pump, an RO module, an intake charge pump driven by an electric motor, and a hydraulic motor driving an electric generator for electric power production. This study is performed using an efficient two-way coupled steady-state model for the average performance of the system in a given sea state, including freshwater permeate production, electric power production, and electric power consumption. A multi-objective design problem is formulated for the purposes of this comparative study, with the objectives of maximizing annual freshwater production, minimizing the displacement of the WEC-driven pump, and minimizing the installed RO membrane area. This establishes a framework for comparison in the absence of a mature techno-economic model. The requirement that the system produces enough electric power to meet its consumption is applied as a constraint on the operation of the system. The oscillating wave surge converter Oyster 1 is assumed as the WEC. Weights on performance of the system in a given sea state are based on historical data from Humboldt Bay, CA. This study finds that (1) architectures in a series configuration allow for a reduction in the WEC-driven pump size of 59–92% compared to prior work, (2) varying the displacement of the WEC-driven pump between sea conditions does not provide any significant advantage in performance, and (3) varying the active RO membrane area between sea condition offers improvements between 7% and 41% in each design objective.

Energy & Fuels↗

Networked Microgrid Energy Management Considering Ownership and Control Structures: A Comparison

With the growing deployment of microgrids, networked microgrids have emerged for their additional advantages of economy, reliability and resilience by coordinating the operation of multiple microgrids. As microgrids are operated with different ownership, objectives and functionalities, the formed networked microgrids show characteristics of mixed ownership, inconsistent objectives and various functionalities. To enable the coordinated operation of networked microgrids, three control structures, i.e., centralized, distributed and decentralized, have been constructed in the literature. However, the data sharing enabling these different paradigms and the resulted value propositions are not well defined, leading to poor resource management and resilience, etc. To solve this issue, a complete comparison of networked microgrid energy management under centralized, distributed and decentralized structures are performed. As a novel contribution, the required minimum data exchange of networked microgrid energy management under three control structures are identified, respectively. The value propositions are calculated and compared against each other by the results of case studies.

control structures↗

Comparison of Auxenochlorella protothecoides and Chlorella spp. Chloroplast Genomes: Evidence for Endosymbiosis and Horizontal Virus-like Gene Transfer

Resequencing of the chloroplast genome (cpDNA) of Auxenochlorella protothecoides UTEX 25 was completed (GenBank Accession no. KC631634.1), revealing a genome size of 84,576 base pairs and 30.8% GC content, consistent with features reported for the previously sequenced A. protothecoides 0710, (GenBank Accession no. KC843975). The A. protothecoides UTEX 25 cpDNA encoded 78 predicted open reading frames, 32 tRNAs, and 4 rRNAs, making it smaller and more compact than the cpDNA genome of C. variabilis (124,579 bp) and C. vulgaris (150,613 bp). By comparison, the compact genome size of A. protothecoides was attributable primarily to a lower intergenic sequence content. The cpDNA coding regions of all known Chlorella species were found to be organized in conserved colinear blocks, with some rearrangements. The Auxenochlorella and Chlorella species genome structure and composition were similar, and of particular interest were genes influencing photosynthetic efficiency, i.e., chlorophyll synthesis and photosystem subunit I and II genes, consistent with other biofuel species of interest. Phylogenetic analysis revealed that Prototheca cutis is the closest known A. protothecoides relative, followed by members of the genus Chlorella. The cpDNA of A. protothecoides encodes 37 genes that are highly homologous to representative cyanobacteria species, including rrn16, rrn23, and psbA, corroborating a well-recognized symbiosis. Several putative coding regions were identified that shared high nucleotide sequence identity with virus-like sequences, suggestive of horizontal gene transfer. Despite these predictions, no corresponding transcripts were obtained by RT-PCR amplification, indicating they are unlikely to be expressed in the extant lineage.

59 BASIC BIOLOGICAL SCIENCES↗

Micropillar Compression of Additively Manufactured 316L Stainless Steels after 2 MeV Proton Irradiation: A Comparison Study between Planar and Cross-Sectional Micropillars

A micropillar compression study with two different techniques was performed on proton-irradiated additively manufactured (AM) 316L stainless steels. The sample was irradiated at 360 °C using 2 MeV protons to 1.8 average displacement per atom (dpa) in the near-surface region. A comparison study with mechanical test and microstructure characterization was made between planar and cross-sectional pillars prepared from the irradiated surface. While a 2 MeV proton irradiation creates a relatively flat damage zone up to 12 µm, the dpa gradient by a factor of 2 leads to significant dpa uncertainty along the pillar height direction for the conventional planar technique. Cross-sectional pillars can significantly reduce such dpa uncertainty. From one single sample, three cross-sectional pillars were able to show dpa-dependent hardening. Furthermore, post-compression transmission electron microscopy allows the determination of the deformation mechanism of individual micropillars. Cross-sectional micropillar compression can be used to study radiation-induced mechanical property changes with better resolution and less data fluctuation.

transmission electron microscopy↗

Taxonomic Re-Evaluation and Genomic Comparison of Novel Extracellular Electron Uptake-Capable Rhodovulum visakhapatnamense and Rhodovulum sulfidophilum Isolates

Rhodovulum spp. are anoxygenic phototrophic purple bacteria with versatile metabolisms, including the ability to obtain electrons from minerals in their environment to drive photosynthesis, a relatively novel process called phototrophic extracellular electron uptake (pEEU). A total of 15 strains of Rhodovulum sulfidophilum were isolated from a marine estuary to observe these metabolisms in marine phototrophs. One representative strain, Rhodovulum sulfidophilum strain AB26, can perform phototrophic iron oxidation (photoferrotrophy) and couples carbon dioxide fixation to pEEU. Here, we reclassify two R. sulfidophilum isolates, strainAB26 and strain AB19, as Rhodovulum visakhapatnamense using taxonomic re-evaluation based on 16S and pufM phylogenetic analyses. The strain AB26 genome consists of 4,380,746 base-pairs, including two plasmids, and encodes 4296 predicted protein-coding genes. Strain AB26 contains 22 histidine kinases, 20 response regulators, and dedicates ~16% of its genome to transport. Transcriptomic data under aerobic, photoheterotrophy, photoautotrophy, and pEEU reveals how gene expression varies between metabolisms in a novel R. visakhapatnamense strain. Genome comparison led by transcriptomic data under pEEU reveals potential pEEU-relevant genes both unique to R. visakhapatnamense strains and shared within the R. sulfidophilum genomes. With these data we identify potential pEEU-important transcripts and how speciation may affect molecular mechanisms of pEEU in Rhodovulum species from the same environment.

59 BASIC BIOLOGICAL SCIENCES↗

Comparison of Saturation Rules Used for Gyrokinetic Quasilinear Transport Modeling

Theory-based transport modeling has been widely successful and is built on the foundations of quasilinear theory. Specifically, the quasilinear expression of the flux can be used in combination with a saturation rule for the toroidal mode amplitude. Most transport models follow this approach. Saturation rules are heuristic and difficult to rigorously derive. We compare three common saturation rules using a fairly accurate quasilinear expression for the fluxes computed using local linear gyrokinetic simulation. We take plasma parameters from experimental H-mode profiles and magnetic equilibrium and include electrons, deuterium, and carbon species. We find that the various saturation rules provide qualitatively similar behavior. This may help to explain why the different theory-based transport models can all predict core tokamak profiles reasonably well. Comparisons with nonlinear local and global gyrokinetic simulations are discussed.

Parker, Scott E. (ORCID:000000030942630X)↗

Evaluation of PERSIANN-CDR Constructed Using GPCP V2.2 and V2.3 and A Comparison with TRMM 3B42 V7 and CPC Unified Gauge-Based Analysis in Global Scale

Providing reliable long-term global precipitation records at high spatial and temporal resolutions is crucial for climatological studies. Satellite-based precipitation estimations are a promising alternative to rain gauges for providing homogeneous precipitation information. Most satellite-based precipitation products suffer from short-term data records, which make them unsuitable for various climatological and hydrological applications. However, Precipitation Estimation from Remotely Sensed Information using Artificial Neural Networks-Climate Data Record (PERSIANN-CDR) provides more than 35 years of precipitation records at 0.25° × 0.25° spatial and daily temporal resolutions. The PERSIANN-CDR algorithm uses monthly Global Precipitation Climatology Project (GPCP) data, which has been recently updated to version 2.3, for reducing the biases in the output of the PERSIANN model. In this study, we constructed PERSIANN-CDR using the newest version of GPCP (V2.3). We compared the PERSIANN-CDR dataset that is constructed using GPCP V2.3 (from here on referred to as PERSIANN-CDR V2.3) with the PERSIANN-CDR constructed using GPCP V2.2 (from here on PERSIANN-CDR V2.2), at monthly and daily scales for the period from 2009 to 2013. First, we discuss the changes between PERSIANN-CDR V2.3 and V2.2 over the land and ocean. Second, we evaluate the improvements in PERSIANN-CDR V2.3 with respect to the Climate Prediction Center (CPC) unified gauge-based analysis, a gauged-based reference, and Tropical Rainfall Measuring Mission (TRMM 3B42 V7), a commonly used satellite reference, at monthly and daily scales. The results show noticeable differences between PERSIANN-CDR V2.3 and V2.2 over oceans between 40° and 60° latitude in both the northern and southern hemispheres. Monthly and daily scale comparisons of the two bias-adjusted versions of PERSIANN-CDR with the above-mentioned references emphasize that PERSIANN-CDR V2.3 has improved mostly over the global land area, especially over the CONUS and Australia. The updated PERSIANN-CDR V2.3 data has replaced V2.2 data for the 2009–2013 period on CHRS data portal and NOAA National Centers for Environmental Information (NCEI) Program.

54 ENVIRONMENTAL SCIENCES↗

Global 10 m Land Use Land Cover Datasets: A Comparison of Dynamic World, World Cover and Esri Land Cover

The European Space Agency’s Sentinel satellites have laid the foundation for global land use land cover (LULC) mapping with unprecedented detail at 10 m resolution. We present a cross-comparison and accuracy assessment of Google’s Dynamic World (DW), ESA’s World Cover (WC) and Esri’s Land Cover (Esri) products for the first time in order to inform the adoption and application of these maps going forward. For the year 2020, the three global LULC maps show strong spatial correspondence (i.e., near-equal area estimates) for water, built area, trees and crop LULC classes. However, relative to one another, WC is biased towards over-estimating grass cover, Esri towards shrub and scrub cover and DW towards snow and ice. Using global ground truth data with a minimum mapping unit of 250 m 2 , we found that Esri had the highest overall accuracy (75%) compared to DW (72%) and WC (65%). Across all global maps, water was the most accurately mapped class (92%), followed by built area (83%), tree cover (81%) and crops (78%), particularly in biomes characterized by temperate and boreal forests. The classes with the lowest accuracies, particularly in the tundra biome, included shrub and scrub (47%), grass (34%), bare ground (57%) and flooded vegetation (53%). When using European ground truth data from LUCAS (Land Use/Cover Area Frame Survey) with a minimum mapping unit of <100 m 2 , we found that WC had the highest accuracy (71%) compared to DW (66%) and Esri (63%), highlighting the ability of WC to resolve landscape elements with more detail compared to DW and Esri. Although not analyzed in our study, we discuss the relative advantages of DW due to its frequent and near real-time data delivery of both categorical predictions and class probability scores. We recommend that the use of global LULC products should involve critical evaluation of their suitability with respect to the application purpose, such as aggregate changes in ecosystem accounting versus site-specific change detection in monitoring, considering trade-offs between thematic resolution, global versus. local accuracy, class-specific biases and whether change analysis is necessary. We also emphasize the importance of not estimating areas from pixel-counting alone but adopting best practices in design-based inference and area estimation that quantify uncertainty for a given study area.

54 ENVIRONMENTAL SCIENCES↗

Supplementary spatial data for Available Land for Cellulosic Biofuel Production: A Supply Chain Centered Comparison

Collection of the underlying spatially explicit data for Available Land for Cellulosic Biofuel Production: A Supply Chain Centered Comparison. Includes raw biomass yield data and soil carbon sequestration potential data for three types of marginal land for the USA midwest at the field level including field areas. Collection also includes raw land rasters for the three types of marginal land, model parameters for the MILP model used in the study, and results used to generate the figures in the paper.

bioenergy landscape design↗

Determination and Comparison of Parameters from Cyclic Voltammetry of LaCl 3 in Eutectic LiCl-KCl

Electrochemical measurements of LaCl 3 were obtained in eutectic LiCl-KCl at 773 K. Cyclic voltammetry data were acquired using a tungsten electrode LaCl 3 amounts in the molten salt in the range of 0.5 to 3.0 wt%. Both cyclic voltammetry and Tafel analyses of the data resulted in calculation of values for the charge transfer coefficient (0.262), diffusion coefficient (1.67 × 10 -5 cm 2 s -1 ), exchange current density (0.0148 to 0.0473 A cm -2 ), and charge transfer resistance (0.404 to 1.99 Ω) related to lanthanum ions in the molten salt. Calculated values were compared to those available in the literature. The values of parameters found in literature varied significantly in comparison to those in the present study due to dissimilar experimental conditions, e.g., electrode material, temperature, and LaCl 3 concentration.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Galaxy and Mass Assembly: A Comparison between Galaxy–Galaxy Lens Searches in KiDS/GAMA

Strong gravitational lenses are a rare and instructive type of astronomical object. Identification has long relied on serendipity, but different strategies—such as mixed spectroscopy of multiple galaxies along the line of sight, machine-learning algorithms, and citizen science—have been employed to identify these objects as new imaging surveys become available. We report on the comparison between spectroscopic, machine-learning, and citizen-science identification of galaxy–galaxy lens candidates from independently constructed lens catalogs in the common survey area of the equatorial fields of the Galaxy and Mass Assembly survey. In these, we have the opportunity to compare high completeness spectroscopic identifications against high-fidelity imaging from the Kilo Degree Survey used for both machine-learning and citizen-science lens searches. We find that the three methods—spectroscopy, machine learning, and citizen science—identify 47, 47, and 13 candidates, respectively, in the 180 square degrees surveyed. These identifications barely overlap, with only two identified by both citizen science and machine learning. We have traced this discrepancy to inherent differences in the selection functions of each of the three methods, either within their parent samples (i.e., citizen science focuses on low redshift) or inherent to the method (i.e., machine learning is limited by its training sample and prefers well-separated features, while spectroscopy requires sufficient flux from lensed features to lie within the fiber). These differences manifest as separate samples in estimated Einstein radius, lens stellar mass, and lens redshift. The combined sample implies a lens candidate sky density of ∼0.59 deg{sup −2} and can inform the construction of a training set spanning a wider mass–redshift space. A combined approach and refinement of automated searches would result in a more complete sample of galaxy–galaxy lens candidates for future surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

The Planetary Ephemeris Program: Capability, Comparison, and Open Source Availability

We describe for the first time in scientific literature the Planetary Ephemeris Program (PEP), an open-source general-purpose astrometric data-analysis program. We discuss, in particular, the implementation of pulsar timing analysis, which was recently upgraded in PEP to handle more options. This implementation was done independently of other pulsar programs, with minor exceptions that we discuss. We illustrate the implementation of this capability by comparing the postfit residuals from the analyses of time-of-arrival observations by both PEP and Tempo2. The comparison shows substantial agreement: 22 ns rms differences for 1065 pulse time-of-arrival measurements for the millisecond pulsar in a binary system, PSR J1909-3744 (pulse period 2.947108 ms; full width half maximum of pulse 43 μs), for epochs in the interval from 2002 December to 2011 February.

42 ENGINEERING↗

Comparison of Electron Capture Rates in the N = 50 Region using 1D Simulations of Core-collapse Supernovae

Abstract Recent studies have highlighted the sensitivity of core-collapse supernovae (CCSNe) models to electron-capture (EC) rates on neutron-rich nuclei near the N = 50 closed-shell region. In this work, we perform a large suite of one-dimensional CCSN simulations for 200 stellar progenitors using recently updated EC rates in this region. For comparison, we repeat the simulations using two previous implementations of EC rates: a microphysical library with parametrized N = 50 rates (LMP), and an older independent-particle approximation (IPA). We follow the simulations through shock revival up to several seconds post-bounce, and show that the EC rates produce a consistent imprint on CCSN properties, often surpassing the role of the progenitor itself. Notable impacts include the timescale of core collapse, the electron fraction and mass of the inner core at bounce, the accretion rate through the shock, the success or failure of revival, and the properties of the central compact remnant. We also compare the observable neutrino signal of the neutronization burst in a DUNE-like detector, and find consistent impacts on the counts and mean energies. Overall, the updated rates result in properties that are intermediate between LMP and IPA, and yet slightly more favorable to explosion than both.

79 ASTRONOMY AND ASTROPHYSICS↗