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At least 397 records · Page 22

Three-Dimensional Convective–Stratiform Echo-Type Classification and Convectivity Retrieval from Radar Reflectivity

The Echo Classification from COnvectivity (ECCO) algorithm identifies convective and stratiform types of radar echo in three dimensions. It is based on the calculation of reflectivity texture—a combination of the intensity and the heterogeneity of the radar echoes on each horizontal plane in a 3D Cartesian volume. Reflectivity texture is translated into convectivity, which is designed to be a quantitative measure of the convective nature of each 3D radar grid point. It ranges from 0 (100% stratiform) to 1 (100% convective). By thresholding convectivity, a more traditional qualitative categorization is obtained, which classifies radar echoes as convective, mixed, or stratiform. In contrast to previous algorithms, these echo-type classifications are provided on the full 3D grid of the reflectivity field. The vertically resolved classifications, in combination with temperature data, allow for subclassifications into shallow, mid-, deep, and elevated convective features, and low, mid-, and high stratiform regions—again in three dimensions. The algorithm was validated using datasets collected over the U.S. Great Plains during the PECAN field campaign. An analysis of lightning counts shows ~90% of lightning occurring in regions classified as convective by ECCO. A statistical comparison of ECCO echo types with the well-established GPM radar precipitation-type categories show 84% (88%) of GPM stratiform (convective) echo being classified as stratiform (convective) or mixed by ECCO. ECCO was applied to radar grids for the continental United States, the United Arab Emirates, Australia, and Europe, illustrating its robustness and adaptability to different radar grid characteristics and climatic regions.

Radars/Radar observations↗

A novel risk classification system for 30-day mortality in children undergoing surgery

A simple, objective and accurate way of grouping children undergoing surgery into clinically relevant risk groups is needed. The purpose of this study, is to develop and validate a preoperative risk classification system for postsurgical 30-day mortality for children undergoing a wide variety of operations. The National Surgical Quality Improvement Project-Pediatric participant use file data for calendar years 2012–2014 was analyzed to determine preoperative variables most associated with death within 30 days of operation (D30). Risk groups were created using classification tree analysis based on these preoperative variables. The resulting risk groups were validated using 2015 data, and applied to neonates and higher risk CPT codes to determine validity in high-risk subpopulations. A five-level risk classification was found to be most accurate. The preoperative need for ventilation, oxygen support, inotropic support, sepsis, the need for emergent surgery and a do not resuscitate order defined non-overlapping groups with observed rates of D30 that vary from 0.075% (Very Low Risk) to 38.6% (Very High Risk). When CPT codes where death was never observed are eliminated or when the system is applied to neonates, the groupings remained predictive of death in an ordinal manner.

60 APPLIED LIFE SCIENCES↗

Energy Efficient Streaming Time Series Classification with Attentive Power Iteration

Efficiently processing time series data streams in real-time on resource-constrained devices offers significant advantages in terms of enhanced computational energy efficiency and reduced time-related risks. We introduce an innovative streaming time series classification network that utilizes attentive power iteration, enabling real-time processing on resource-constrained devices. Our model continuously updates a compact representation of the entire time series, enhancing classification accuracy while conserving energy and processing time. Notably, it excels in streaming scenarios without requiring complete time series access, enabling swift decisions. Experimental results show that our approach excels in classification accuracy and energy efficiency, with over 70% less consumption and threefold faster task completion than benchmarks. This work advances real-time responsiveness, energy conservation, and operational effectiveness for constrained devices, contributing to optimizing various applications.

97 MATHEMATICS AND COMPUTING↗

UAS Detection Classification and Neutralization: Market Survey 2015

The purpose of this document is to briefly frame the challenges of detecting low, slow, and small (LSS) unmanned aerial systems (UAS). The conclusion drawn from internal discussions and external reports is the following; detection of LSS UAS is a challenging problem that cannot be achieved with a single detection modality for all potential targets. Classification of LSS UAS, especially classification in the presence of background clutter (e.g., urban environment) or other non-threating targets (e.g., birds), is under-explored. Though information of available technologies is sparse, many of the existing options for UAS detection appear to be in their infancy (when compared to more established ground-based air defense systems for larger and/or faster threats). Companies currently providing or developing technologies to combat the UAS safety and security problem are certainly worth investigating, however, no company has provided the statistical evidence necessary to support robust detection, identification, and/or neutralization of LSS UAS targets. The results of a market survey are included that highlights potential commercial entities that could contribute some technology that assists in the detection, classification, and neutralization of a LSS UAS. This survey found no clear and obvious commercial solution, though recommendations are given for further investigation of several potential systems.

42 ENGINEERING↗

Site Classification for Standard Modular Hydropower Development: Characterizing Stream Reaches by Module Need

The objective of site classification for Standard Modular Hydropower (SMH) development is to develop a framework for classifying potential SMH sites in terms useful for informing SMH development, such as module need and module design requirements. While the current vision for SMH has focused on applications for new stream-reach development, these site classifications are equally useful for other applications, such as modular development at non-powered dams and other hydropower co-development opportunities. We used K-means clustering to classify sites (i.e., stream reaches) into clusters (i.e., groups of sites with similar attributes) based on simultaneous consideration of physical and biological attributes of those sites. Stream reaches included were confined to those with mean annual flow > 50 cfs and < 25,000 cfs (~350,000 reaches). Site Classification was conducted separately for six modules: hydroelectric generation, water quality, sediment passage, fish passage, foundation support, and recreation. About 340,000 stream reaches across the contiguous US were classified into 10 groups for each of the 6 different module categories. For each module category, clusters are visualized on US maps and described based on the defining variables that differentiate clusters from each other.

13 HYDRO ENERGY↗

Final Hazard Classification Request for Not More Than 5 Percent Explosives in Solvent Mixtures

This report requests a non-explosive hazard classification of trace explosives in solution. UN Series 1 and 2 explosive hazard classification tests were performed on a simulated worst-case waste stream of five (5) percent by weight of explosive (CL-20) dissolved in a solvent solution (acetone) for transport and storage. The explosive hazard classification test results reported the sample to be non-explosive and the report provides the necessary data for the Department of Transportation to determine and assign the appropriate hazard class for five (5) percent or less of trace explosive in solvent solutions when being shipped and/or stored. Based on the test results, this report requests that the Department of Transportation assign a hazard class of 3, Desensitized explosive liquid, n.o.s. for this type of substance.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Particle Track Classification Using Quantum Associative Memory (Final Technical Report)

This project explored the use of quantum-assisted algorithms for pattern matching in sub-atomic physics experiments. Pattern matching algorithms are commonly employed to prune data of random noise and to help discriminate between signals generated by particle tracks of interest and signals generated by background events. The quantum-assisted algorithms explored in this project were based on an Ising formulation of quantum associative model (QAMM) recall and quantum content-addressable memory (QCAM) recall. The recall is performed by comparing a probe pattern with those stored in a library of patterns encoded in the QAMM/QCAM model. The classification accuracy of QAMM and QCAM recall was determined as a function of detector resolution, noise, and efficiency and pattern density, where pattern density is defined as the ratio of the number of reference signal patterns encoded in the library to each pattern’s length. We found that QAMM achieved high classification accuracy when applied to datasets with low pattern density. QCAM achieved high classification accuracy for datasets with high pattern density and was found to be more robust to detector noise. The project methodology and results are described in detail in our arXiv preprint (arXiv:2011.11848) . This project was conducted by scientists at the Johns Hopkins University Applied Physics Laboratory and Oak Ridge National Laboratory from August 2018 to August 2020 and was supported by DOE grant DE-SC0019497.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Data Fusion of Very High Resolution Hyperspectral and Polarimetric SAR Imagery for Terrain Classification

Performing terrain classification with data from heterogeneous imaging modalities is a very challenging problem. The challenge is further compounded by very high spatial resolution. (In this paper we consider very high spatial resolution to be much less than a meter.) At very high resolution many additional complications arise, such as geometric differences in imaging modalities and heightened pixel-by-pixel variability due to inhomogeneity within terrain classes. In this paper we consider the fusion of very high resolution hyperspectral imaging (HSI) and polarimetric synthetic aperture radar (PolSAR) data. We introduce a framework that utilizes the probabilistic feature fusion (PFF) one-class classifier for data fusion and demonstrate the effect of making pixelwise, superpixel, and pixelwise voting (within a superpixel) terrain classification decisions. We show that fusing imaging modality data sets, combined with pixelwise voting within the spatial extent of superpixels, gives a robust terrain classification framework that gives a good balance between quantitative and qualitative results.

47 OTHER INSTRUMENTATION↗

Feature Extraction: Improving Remote Sensor Classification of Non-Proliferation

This research focuses on developing algorithms for nuclear non-proliferation detection using remote sensor modeling. To improve the performance of classification models, we implemented a data pipeline with feature extraction. This pipeline takes raw data and transforms it into smaller data points called features that still describe the model. Improving this classification works towards the departments of energy’s missions of ensuring American’s security and prosperity by creating technology that addresses nuclear challenges. To conduct this analysis, we used the Python programming language and some key packages, including tsfresh and TSFEL. Originally tsfresh was selected because it has the most statistical features out of all the packages. Later TSFEL was incorporated due to the additional features it can extract from data, such as temporal and spectral. However, feature extraction becomes challenging in the presence of missing values. In this case, two additional Python packages were added to our workflow, NumPy and pandas, allowing for the feature extraction process to handle unknown values. Our data pipeline was tested on data collected from a simulation that describes the process state of a physical example. The results show the pipeline’s capability to consume and extract a total 17 features from tabular data. Future work includes producing classifications using decision tree-based models such as XGBoost and improving data collection by analyzing feature importance.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Optimal Transport for $e/\pi^0$ Particle Classification in LArTPC Neutrino Experiments

The efficient classification of electromagnetic activity from $\pi^0$ and electrons is a notoriously challenging problem in the reconstruction of neutrino interactions in Liquid Argon Time Projection Chamber (LArTPC) detectors. We address this problem using the mathematical framework of Optimal Transport (OT), which has been successfully employed for event classification in other HEP contexts and is ideally suited to the high-resolution calorimetry of LArTPCs. Using a publicly available simulated dataset from the MicroBooNE collaboration, we show that OT methods achieve state-of-the-art reconstruction performance in $e/\pi^0$ classification. The success of this first application indicates the broader promise of OT methods for LArTPC-based neutrino experiments. This work motivates integrating OT in the reconstruction frameworks of LArTPC experiments such as SBN and DUNE more broadly. Since $\pi^0$s are a significant background for both oscillation experiments and BSM searches, OT can lead to sizeable improvements in the selection efficiency for these analyses by introducing a novel method with which to achieve $\pi^0$ rejection.

Caratelli, David [UC, Santa Barbara]↗

Comparative Analysis of DNA LLM Classification Techniques Using Intra-Layer Feature Extraction with Autoencoder Stacks [Poster]

This project conducts a comparative analysis of DNA LLM classification techniques using Evo2, Grover, and UTRML, focusing on intra-layer feature extraction in Evo2. By extracting features from multiple layers of Evo2 and integrating them into an autoencoder stack with a binary classification head, we evaluate its effectiveness in classifying genomic sequences compared to smaller DNA language models. My findings demonstrate that Evo2 outperforms Grover and UTRML in classification accuracy on a dataset provided by department 08625, CAO2021, while UTRML offers competitive performance with lower computational costs. This study highlights the potential of advanced embedding techniques in enhancing genomic data analysis and informs future research in bioinformatics.

59 BASIC BIOLOGICAL SCIENCES↗

SAIL Field Campaign X-Band Precipitation Radar Seasonal Surface Hydrometeor Phase Classification Value-Added Product Report

The Surface Atmosphere Integrated Field Laboratory (SAIL) campaign generated an unprecedented, multisensory record of cold-season precipitation in the Upper Colorado River Basin (UCRB). To complement the Surface Quantitative Precipitation Estimation (SQUIRE) snow water equivalent (SWE) product derived from the Colorado State University (CSU) X-band radar, a hydrometeor phase classification data set was developed to systematically identify phase of the near-surface precipitation. The algorithm uses Corrected Moments in Antenna Coordinates (CMAC) fields with semi-supervised classification (SSC) and fuzzy-logic hydrometeor classification (FHC) methods and maps hydrometeor classes to a compact set of phase classes suitable for Quantitative Precipitation Estimation (QPE) and hydrologic applications. We used SQUIRE grid projections to mitigate beam-blockage issues by selecting the near-surface gates for each beam as well as to make it directly usable for the QPE products.

54 ENVIRONMENTAL SCIENCES↗

Exploring Object Detection and Image Classification Tasks for Niche Use Case in Naturalistic Driving Studies

Naturalistic driving studies consist of drivers using their personal vehicles and provide valuable real-world data, but privacy issues must be handled very carefully. Drivers sign a consent form when they elect to participate, but passengers do not for a variety of practical reasons. However, their privacy must still be protected. One large study includes a blurred image of the entire cabin which allows reviewers to find passengers in the vehicle; this protects the privacy but still allows a means of answering questions regarding the impact of passengers on driver behavior. A method for automatically counting the passengers would have scientific value for transportation researchers. We investigated different image analysis methods for automatically locating and counting the non-drivers including simple face detection and fine-tuned methods for image classification and a published object detection method. We also compared the image classification using convolutional neural network and vision transformer backbones. Our studies show the image classification method appears to work the best in terms of absolute performance, although we note the closed nature of our dataset and nature of the imagery makes the application somewhat niche and object detection methods also have advantages. We perform some analysis to support our conclusion.

Peruski, Ryan↗

Genome-Based Taxonomic Classification of the Phylum Actinobacteria

The application of phylogenetic taxonomic procedures led to improvements in the classification of bacteria assigned to the phylum Actinobacteria but even so there remains a need to further clarify relationships within a taxon that encompasses organisms of agricultural, biotechnological, clinical, and ecological importance. Classification of the morphologically diverse bacteria belonging to this large phylum based on a limited number of features has proved to be difficult, not least when taxonomic decisions rested heavily on interpretation of poorly resolved 16S rRNA gene trees. Here, draft genome sequences of a large collection of actinobacterial type strains were used to infer phylogenetic trees from genome-scale data using principles drawn from phylogenetic systematics. The majority of taxa were found to be monophyletic but several orders, families, and genera, as well as many species and a few subspecies were shown to be in need of revision leading to proposals for the recognition of 2 orders, 10 families, and 17 genera, as well as the transfer of over 100 species to other genera. In addition, emended descriptions are given for many species mainly involving the addition of data on genome size and DNA G+C content, the former can be considered to be a valuable taxonomic marker in actinobacterial systematics. Many of the incongruities detected when the results of the present study were compared with existing classifications had been recognized from 16S rRNA gene trees though whole-genome phylogenies proved to be much better resolved. The few significant incongruities found between 16S/23S rRNA and whole genome trees underline the pitfalls inherent in phylogenies based upon single gene sequences. Similarly good congruence was found between the discontinuous distribution of phenotypic properties and taxa delineated in the phylogenetic trees though diverse non-monophyletic taxa appeared to be based on the use of plesiomorphic character states as diagnostic features.

59 BASIC BIOLOGICAL SCIENCES↗

Physics-Based Method for Generating Fully Synthetic IV Curve Training Datasets for Machine Learning Classification of PV Failures

Classification machine learning models require high-quality labeled datasets for training. Among the most useful datasets for photovoltaic array fault detection and diagnosis are module or string current-voltage (IV) curves. Unfortunately, such datasets are rarely collected due to the cost of high fidelity monitoring, and the data that is available is generally not ideal, often consisting of unbalanced classes, noisy data due to environmental conditions, and few samples. In this paper, we propose an alternate approach that utilizes physics-based simulations of string-level IV curves as a fully synthetic training corpus that is independent of the test dataset. In our example, the training corpus consists of baseline (no fault), partial soiling, and cell crack system modes. The training corpus is used to train a 1D convolutional neural network (CNN) for failure classification. The approach is validated by comparing the model’s ability to classify failures detected on a real, measured IV curve testing corpus obtained from laboratory and field experiments. Results obtained using a fully synthetic training dataset achieve identical accuracy to those obtained with use of a measured training dataset. When evaluating the measured data’s test split, a 100% accuracy was found both when using simulations or measured data as the training corpus. When evaluating all of the measured data, a 96% accuracy was found when using a fully synthetic training dataset. The use of physics-based modeling results as a training corpus for failure detection and classification has many advantages for implementation as each PV system is configured differently, and it would be nearly impossible to train using labeled measured data.

Hopwood, Michael W. (ORCID:0000000161901767)↗

Classification of Nuclear Reactor Operations Using Spatial Importance and Multisensor Networks

Distributed multisensor networks record multiple data streams that can be used as inputs to machine learning models designed to classify operations relevant to proliferation at nuclear reactors. The goal of this work is to demonstrate methods to assess the importance of each node (a single multisensor) and region (a group of proximate multisensors) to machine learning model performance in a reactor monitoring scenario. This, in turn, provides insight into model behavior, a critical requirement of data-driven applications in nuclear security. Using data collected at the High Flux Isotope Reactor at Oak Ridge National Laboratory via a network of Merlyn multisensors, two different models were trained to classify the reactor’s operational state: a hidden Markov model (HMM), which is simpler and more transparent, and a feed-forward neural network, which is less inherently interpretable. Traditional wrapper methods for feature importance were extended to identify nodes and regions in the multisensor network with strong positive and negative impacts on the classification problem. These spatial-importance algorithms were evaluated on the two different classifiers. The classification accuracy was then improved relative to baseline models via feature selection from 0.583 to 0.839 and from 0.811 ± 0.005 to 0.884 ± 0.004 for the HMM and feed-forward neural network, respectively. While some differences in node and region importance were observed when using different classifiers and wrapper methods, the nodes near the facility’s cooling tower were consistently identified as important—a conclusion further supported by studies on feature importance in decision trees. Node and region importance methods are model-agnostic, inform feature selection for improved model performance, and can provide insight into opaque classification models in the nuclear security domain.

Tibbetts, Jake↗

Identification and Classification of Fungal GPCR Gene Families

G protein-coupled receptors (GPCRs) are transmembrane proteins crucial for signal transduction in eukaryotes, responding to diverse extracellular signals. Researchers have found and systematically summarized 14 distinct types of GPCRs in fungi but their distribution among numerous fungal species remained largely unexamined. Additionally, three families of mammalian homologs (Rhodopsin, Glutamate, and Frizzled) have been found in previous studies, but they are not included in the systematic classification of fungal GPCRs. Our study establishes a unified classification of 17 GPCR classes in fungi, combining 14 fungal and 3 mammalian previously recognized groups, and classifies 28,294 GPCRs across 1357 fungal species, significantly expanding the scale of GPCRs in fungi and demonstrating their broader distribution. We found that mammalian homologs are notably more prevalent in Early Diverging Fungi (EDF), whereas the previous 14 classes are predominantly found in Ascomycota and Basidiomycota. The most abundant class detected in fungi was Pth11-like GPCRs, exclusively found in Pezizomycotina and involved in fungal pathogenicity. Our analysis suggested that Pezizomycotina ancestor possessed an extensive array of Pth11-like GPCRs, but over time, some species underwent considerable reductions in these GPCRs in conjunction with genome contractions. Utilizing a custom-built convolutional neural network (CNN) for the identification of fungal GPCRs, we identified several putative novel fungal GPCRs. Predicted interactions between these prospective new GPCRs and G-alpha proteins, as simulated by AlphaFold Multimer, provided additional support for their functional relevance. In conclusion, our work defines the first large-scale, unified classification of fungal GPCRs, reveals lineage-specific expansions and contractions, and uncovers previously unrecognized GPCR candidates with potential functional roles in fungal signaling.

G protein-coupled receptors↗