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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2024

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Advances in high-throughput technologies have enhanced our ability to describe microbial communities as they relate to human health and disease. Alongside the growth in sequencing data has come an influx of resources that synthesize knowledge surrounding microbial traits, functions, and metabolic potential with knowledge of how they may impact host pathways to influence disease phenotypes. These knowledge bases can enable the development of mechanistic explanations that may underlie correlations detected between microbial communities and disease. In this review, we survey existing resources and methodologies for the computational integration of broad classes of microbial and host knowledge. We evaluate these knowledge bases in their access methods, content, and source characteristics. We discuss challenges of the creation and utilization of knowledge bases including inconsistency of nomenclature assignment of taxa and metabolites across sources, whether the biological entities represented are rooted in ontologies or taxonomies, and how the structure and accessibility limit the diversity of applications and user types. We make this information available in a code and data repository at: https://github.com/lozuponelab/knowledge-source-mappings. Addressing these challenges will allow for the development of more effective tools for drawing from abundant knowledge to find new insights into microbial mechanisms in disease by fostering a systematic and unbiased exploration of existing information.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

High fidelity actuator line data from 9 turbine wind farm simulations using ExaWind

This data was generated with the ExaWind code suite (https://github.com/Exawind) to investigate the performance of different Active Wake Mixing turbine control in a wind farm situated in a stable atmospheric boundary layer. All cases correspond to a 3x3 wind farm in a 10km x 10km domain using a total mesh size that varied between 1.6 X 10^9 to 1.85 X 10^9 grid cells. The simulations were run across 1800-2000 GPUs on Frontier. The case description and data generation process is fully documented in Yalla, G. R., Brown, K., Cheung, L., Houck, D., deVelder, N., and Balaji, J. (2025). "Estimating annual energy production of wake mixing control strategies including comparisons to wake steering." Wind Energy Sciences (https://doi.org/10.5194/wes-2025-250).

17 WIND ENERGY↗

DOE OSTI2021

IGRINS RV: A Precision Radial Velocity Pipeline for IGRINS Using Modified Forward Modeling in the Near-infrared

Application of the radial velocity (RV) technique in the near-infrared is valuable because of the diminished impact of stellar activity at longer wavelengths, making it particularly advantageous for the study of late-type stars but also for solar-type objects. In this paper, we present the IGRINS RV open-source python pipeline for computing infrared RV measurements from reduced spectra taken with IGRINS, an R ≡ λ/Δλ ∼ 45,000 spectrograph with simultaneous coverage of the H band (1.49–1.80 μm) and K band (1.96–2.46 μm). Using a modified forward-modeling technique, we construct high-resolution telluric templates from A0 standard observations on a nightly basis to provide a source of common-path wavelength calibration while mitigating the need to mask or correct for telluric absorption. Telluric standard observations are also used to model the variations in instrumental resolution across the detector, including a yearlong period when the K band was defocused. Without any additional instrument hardware, such as a gas cell or laser frequency comb, we are able to achieve precisions of 26.8 m s{sup −1} in the K band and 31.1 m s{sup −1} in the H band for narrow-line hosts. These precisions are empirically determined by a monitoring campaign of two RV standard stars, as well as the successful retrieval of planet-induced RV signals for both HD 189733 and τ Boo A; furthermore, our results affirm the presence of the Rossiter–McLaughlin effect for HD 189733. The IGRINS RV pipeline extends another important science capability to IGRINS, with publicly available software designed for widespread use.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

T-BMT Spin Resonance Tracker Code for He3 with Six Snakes

Polarization lifetime for He3 using two and six snakes are studied using the T-BMT Spin Resonance Tracker code. This code integrates a reduced spinor form of the T-BMT equation including only several spin resonances and the kinematics of synchrotron motion. It was previously benchmarked against RHIC polarization lifetime under the two snake system *. * Phys. Rev.Accel. Beams 22 (2019) 9, 091001

Ranjbar, V. H.↗

DOE OSTI2020

Sierra/SolidMechanics 4.56 User's Guide

Siera/SolidMechanics (Sierra / SM) is a Lagrangian, three-dimensional code for finite element analysis of solids and structures. It provides capabilities for explicit dynamic, implicit quasistatic and dynamic analyses. The explicit dynamics capabilities allow for the efficient and robust solution of models with extensive contact subjected to large, suddenly applied loads. For implicit problems, Sierra / SM uses a multi-level iterative solver, which enables it to effectively solve problems with large deformations, nonlinear material behavior, and contact. Sierra / SM has a versatile library of continuum and structural elements, and a large library of material models. The code is written for parallel computing environments enabling scalable solutions of extremely large problems for both implicit and explicit analyses. It is built on the SIERRA Framework, which facilitates coupling with other SIERRA mechanics codes . This document describes the functionality and input syntax for Sierra/SM.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Sierra/SolidMechanics 4.56.2 User's Guide

Sierra/SolidMechanics (Sierra/SM) is a Lagrangian, three-dimensional code for finite element analysis of solids and structures. It provides capabilities for explicit dynamic, implicit quasistatic and dynamic analyses. The explicit dynamics capabilities allow for the efficient and robust solution of models with extensive contact subjected to large, suddenly applied loads. For implicit problems, Sierra/SM uses a multi-level iterative solver, which enables it to effectively solve problems with large deformations, nonlinear material behavior, and contact. Sierra/SM has a versatile library of continuum and structural elements, and a large library of material models. The code is written for parallel computing environments enabling scalable solutions of extremely large problems for both implicit and explicit analyses. It is built on the SIERRA Framework, which facilitates coupling with other SIERRA mechanics codes . This document describes the functionality and input syntax for Sierra/SM.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Experiments and Simulations on the Turbulent, Rarefaction Wave Driven Rayleigh–Taylor Instability

Experiments were performed to observe the growth of the turbulent, Rayleigh–Taylor unstable mixing layer generated between air and SF 6 , with an Atwood number of A=(ρ 2 –ρ 1 )/(ρ 2 +ρ 1 ) = 0.64, where ρ 1 and ρ 2 are the densities of air and SF 6 , respectively. A nonconstant acceleration with an average value of 2300g 0 , where g 0 is the acceleration due to gravity, was generated by interaction of the interface between the two gases with a rarefaction wave. Three-dimensional, multimode perturbations were generated on the diffuse interface, with a diffusion layer thickness of δ = 3.6 mm, using a membraneless vertical oscillation technique, and 20 experiments were performed to establish a statistical ensemble. The average perturbation from this ensemble was extracted and used as input for a numerical simulation using the Lawrence Livermore National Laboratory (LLNL) Miranda code. Good qualitative agreement between the experiment and simulation was observed, while quantitative agreement was best at early to intermediate times. Several methods were used to extract the turbulent growth constant α from experiments and simulations while accounting for time varying acceleration. Experimental, average bubble and spike asymptotic self-similar growth rate values range from α = 0.022 to α = 0.032 depending on the method used, and accounting for variable acceleration. Values found from the simulations range from α = 0.024 to α = 0.041. Here, the values of α measured in the experiments are lower than what are typically measured in the literature but are more in line with those found in recent simulations.

42 ENGINEERING↗

DOE OSTI2021

TOUGHREACT V4.12

TOUGHREACT V4.12 is a 3-D reactive transport code that handles to non-isothermal, multiphase/multicomponent fluid flow, heat transport, aqueous and gaseous species advection-diffusion, and equilibrium/kinetic water-gas-rock-biological reactions. TOUGHREACT V4.12 is based on TOUGHREACT V3.3, with several new features including: an option to compute activity coefficients using the Pitzer ion interaction model; implementation of ECO2N V2.0 for temperatures up to 300 C; options to simulate forward and reverse osmosis, including 2D Poiseuille flow; addition of EOS8 and revisions for EOS5 and EWASG with H2(g); addition of gas species decay, various new output formats and time step control options; many bug fixes.

Spycher, Nicolas↗

DOE OSTI2020

First measurement in the Gamow window of a reaction for the γ-process in inverse kinematics: 76 Se(α,γ) 80 Kr

The p-nuclei are the few stable nuclei heavier than iron on the neutron-deficient side of the valley of stability that cannot be produced through astrophysical neutron-capture reactions. The limited experimental data on reactions through which the p-nuclei might be produced leaves the origin of their production largely unknown. This work presents the first cross section measurements of the 76 Se(α,γ) 80 Kr reaction. The rate of the time reversed reaction, 80 Kr(γ,α) 76 Se, is one of the most uncertain of possible reactions which can occur at the 80 Kr branching point on the ,-process photo-disintegration pathway. The reaction flow through 80 Kr will directly affect the final abundance of the p nuclide 78 Kr. Experimental cross sections at two astrophysically relevant energies are reported and compared to cross sections calculated using Hauser-Feshbach codes TALYS, NON-SMOKER, and SMARAGD. The success of these first (α,γ) cross section measurements performed in inverse kinematics in the energy region of the γ-process opens the door for future studies of reactions on radioactive γ-process nuclides.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Sierra/SolidMechanics 4.58 User's Guide

Sierra / SolidMechanics (Sierra / SM) is a Lagrangian, three-dimensional code for finite element analysis of solids and structures. It provides capabilities for explicit dynamic, implicit quasistatic and dynamic analyses. The explicit dynamics capabilities allow for the efficient and robust solution of models with extensive contact subjected to large, suddenly applied loads. For implicit problems, Sierra / SM uses a multi-level iterative solver, which enables it to effectively solve problems with large deformations, nonlinear material behavior, and contact. Sierra / SM has a versatile library of continuum and structural elements, an d a large library of material models. The code is written for parallel computing environments enabling scalable solutions of extremely large problems for both implicit and explicit analyses. It is built on the SIERRA Framework, which facilitates coupling with other SIERRA mechanics codes . This document describes the functionality and input syntax for Sierra / SM.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Coupling MOOSE-Wrapped MPACT to BISON

As part of the Nuclear Energy Advanced Modeling and Simulation (NEAMS) program, an effort is being made to leverage codes like Virtual Environment for Reactor Analysis (VERA) and Michigan Parallel Characteristics Transport (MPACT) by coupling them with other NEAMS codes. To facilitate coupling with other Multiphysics Objected Oriented Simulation Environment (MOOSE) applications, a MOOSE-wrapped MPACT app is created. The capability of this app, named Trogdor, is demonstrated by coupling it with another MOOSE app, BISON. Several single pin problems were run to test the Trogdor and BISON coupling.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2021

SAM Developments for MSR Modeling (FY21)

An advanced system analysis tool, SAM, is under development for advanced non-LWR reactor safety analysis, including molten salt reactors (MSR). To support the development and utilization of the SAM code for MSR safety analysis and licensing, continuous efforts have been devoted to enhancing code capabilities and updating reference models for the MSRs. This report documents the FY21 progress in SAM code development, capability enhancements, and reference model development to support transient safety analysis of MSRs, including code enhancements in reactor kinetics and reactivity feedback modeling for liquid fuel reactors, updates of the Molten Salt Reactor Experiment (MSRE) primary system model, developments and updates of the molten salt fast reactor (MSFR) model based on EVOL design, and implementation of a drift flux model for modeling gas transport in MSR systems.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2025

UQpy Version 4.2: Uncertainty quantification with Python

We introduce a new module for the UQpy software package which extends its capabilities into the field of Scientific Machine Learning. This module builds on PyTorch to create a flexible and robust platform for uncertainty quantification in machine learning. The scientific machine learning module of UQpy introduces custom layers, neural networks, and neural network trainers that are compatible with torch version 2.2.2 and allow for “plug and play” integration into existing torch code.

Neural networks↗

DOE OSTI2022

PETSc/TAO Users Manual: Revision 3.18

This manual describes the use of the Portable, Extensible Toolkit for Scientific Computation (PETSc) and the Toolkit for Advanced Optimization (TAO) for the numerical solution of partial differential equations and related problems on high-performance computers. PETSc/TAO is a suite of data structures and routines that provide the building blocks for the implementation of large-scale application codes on parallel (and serial) computers. PETSc uses the MPI standard for all distributed memory communication.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

PETSc/TAO Users Manual (Rev. 3.20)

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

FAST-1.2: Integral Assessment

An integral assessment has been performed to quantify the predictive capabilities of FAST, a thermal-mechanical nuclear fuel performance code designed to analyze fuel behavior from beginning of life to burnup levels allowed by the U.S. Nuclear Regulatory Commission (NRC). FAST code calculations are shown to compare satisfactorily to a preselected set of experimental data with both steady-state and anticipated operating occurrence (AOO) conditions and design basis accident (DBA) transient operating conditions. This document describes the assessment of FAST-1.2, the latest version of FAST, released March 2023.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2022

Vector boson pair production at one loop: analytic results for the process $q\bar{q}$$ℓ\bar{ℓ}$$ℓ'\bar{ℓ}'g$

We present compact analytic results for the one-loop amplitude for the process 0 → $q\bar{q}$$ℓ\bar{ℓ}$$ℓ'\bar{ℓ}'g$, relevant for both the production of a pair of Z and W-bosons in association with a jet. We focus on the gauge-invariant contribution mediated by a loop of quarks. We explicitly include all effects of the loop-quark mass m, appropriate for the production of a pair of Z-bosons. In the limit m → 0, our results are also applicable to the production of W-boson pairs, mediated by a loop of massless quarks. Implemented in a numerical code, the results are fast. The calculation uses novel advancements in spinor-helicity simplification techniques, for the first time applied beyond five-point massless kinematics. We make use of primary decompositions from algebraic-geometry, which now involve non-radical ideals, and p-adic numbers from number theory. We show how to infer whether numerator polynomials belong to symbolic powers of non-radical ideals through numerical evaluations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2025

Electron temperature gradient instability and transport analysis in NSTX and NSTX-U plasmas

Extensive linear and nonlinear simulations to study electron temperature gradient (ETG) stability and thermal transport in National Spherical Torus Experiment (NSTX) and NSTX-U plasmas were performed using the fully electromagnetic gyrokinetic code CGYRO. Linear simulations were performed to determine ETG thresholds in different discharges, showing that ETG modes in spherical tokamaks can present different scalings compared to conventional aspect-ratio tokamaks. Nonlinear gyrokinetic simulations were conducted for selected cases to calculate electron thermal transport and compare to experimental values. Results are also compared with those of ETG modes in the multi-mode model and the Trapped-Gyro-Landau-Fluid reduced model codes, to better understand their applicability in spherical tokamaks.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗