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All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Theoretical Development of Controller Transfer applied to Dynamical Systems

Data-driven control strategies suffer from the necessity of training and its associated computational time and cost. This motivates the continuous increase of popularity of transfer learning based methods. In this paper, we have investigated transfer learning in the context of controller for dynamical systems. First, we have derived conditions under which controller can be transferred between two linear dynamical systems. Furthermore, we have introduced a novel algorithm to design the transferable and non-transferable control components for linear systems. Secondly, we have derived conditions under which a stabilizing controller can be transferred between two different nonlinear dynamical systems. Furthermore, we have used the notion of zero dynamics to transform the nonlinear dynamics into global normal form, to derive the transferability conditions on the controller. Finally, we have numerically evaluated the performance of our transfer learning based methods for two sets of example linear and nonlinear dynamical systems.

Chakraborty, Indrasis↗
DOE OSTI2022

Contextual Active Online Model Selection with Expert Advice

How can we collect the most useful labels to learn a model selection policy, when presented with arbitrary heterogeneous data streams? In this paper, we formulate this task as a contextual active model selection problem, where at each round the learner receives an unlabeled data point along with a context. The goal is to output the best model for any given context without obtaining an excessive amount of labels. In particular, we focus on the task of selecting pre-trained classifiers, and propose a contextual active model selection algorithm (CAMS), which relies on a novel uncertainty sampling query criterion defined on a given policy class for adaptive model selection. In comparison to prior art, our algorithm does not assume a globally optimal model. We provide rigorous theoretical analysis for the regret and query complexity under both adversarial and stochastic settings. Our experiments on several benchmark classification datasets demonstrate the algorithm’s effectiveness in terms of both regret and query complexity. Notably, to achieve the same accuracy, CAMS incurs less than 10% of the label cost when compared to the best online model selection baselines on CIFAR10.

Liu, Xuefeng↗
NASA NTRS2017

Kepler Planet Detection Metrics: Window and One-Sigma Depth Functions for Data Release 25

This document describes the window and one-sigma depth functions relevant to the Transiting Planet Search (TPS) algorithm in the Kepler pipeline (Jenkins 2002; Jenkins et al. 2017). The window function specifies the fraction of unique orbital ephemeris epochs over which three transits are observable as a function of orbital period. In this context, the epoch and orbital period, together, comprise the ephemeris of an orbiting companion, and ephemerides with the same period are considered equivalent if their epochs differ by an integer multiple of the period. The one-sigma depth function specifies the depth of a signal (in ppm) for a given light curve that results in a one-sigma detection of a transit signature as a function of orbital period when averaged over all unique orbital ephemerides. These planet detection metrics quantify the ability of TPS to detect a transiting planet signature on a star-by-star basis. They are uniquely applicable to a specific Kepler data release, since they are dependent on the details of the light curves searched and the functionality of the TPS algorithm used to perform the search. This document describes the window and one-sigma depth functions relevant to Kepler Data Release 25 (DR25), where the data were processed (Thompson et al. 2016) and searched (Twicken et al. 2016) with the SOC 9.3 pipeline. In Section 4, we describe significant differences from those reported in Kepler Data Release 24 (Burke Seader 2016) and document our verification method.

Planet Detection Metrics↗
NASA NTRSDate not supplied

Informing New Concepts for UAS and Autonomous System Safety Management using Disaster Management and First Responder Scenarios

As emerging flight operations become more prevalent and increasingly automated and distributed, the capabilities for managing safety of vehicles and operations will also need to evolve. To address this challenge, the National Academies has envisioned an In-Time Aviation Safety Management System (IASMS) capability for a wide range of aviation operations including current commercial operations as well as new entrants envisioned with advanced air mobility (AAM). The suite of IASMS services, functions, and capabilities (SFCs) would be implemented in a federated approach and would address trends as well as individual operations. Through predictive modeling and data analysis, IASMS is envisioned to identify arising risks so that they can be mitigated, in-time, before a safety incident occurs. IASMS and its requisite set of SFCs must leverage a wide range of information to perform. To better understand these new needs, FSF worked with the aviation and humanitarian communities to develop and validate scenarios that include traditional aviation operations and UAS operations intermingled as they are deployed for disaster management and first responder (DMFR) situations. The three scenarios developed include: • Post Natural disaster response, such as a hurricane, involving multiple parties utilizing traditional aviation and UAS to support rescue operations, surveil damage, and locate survivors needing assistance. • Wildfire fighting in remote locations with traditional aircraft for transport and fire-retardant delivery combined with UAS for surveillance of fire locations as well as to track individual firefighter locations. • Medical Operations and AAM in Urban Environments including passenger-carrying helicopters and AAM vehicles, medical missions (such as transport of radio-pharmaceuticals), and other UAS delivery operations (such as the delivery of defibrillators). Each scenario was developed and validated by representatives with expertise in humanitarian operations, urban and rural emergency response, air traffic management, UAS operations, and traditional flight operations. The scenario definitions address roles and responsibilities of individual actors, the appropriate utilization of UAS, and the actions taken by those actors to appropriately manage risks associated with the mission and environment. The risks to aviation traffic and to people on the ground explored included potential risks arising from incompatibilities in calculating reference altitudes (eg, differing uses of AGL, MSL, barometric, or GPS-derived values), loss of command and control (C2) communications, rapid changes in weather and winds, and physical interference. For each risk, IASMS SFCs were postulated in the context of monitoring services, risk assessment capabilities, and identifying appropriate mitigation strategies. The identified SFC capabilities were envisioned from known services postulated for IASMS and for UTM. For these unique environments, IASMS SFCs are needed to address conditions such as hazardous payloads, micro-climates and urban canyons, and the need to keep uninvolved air traffic out of the area where DMFR operations are being conducted. The second phase of analysis focused on inferring the specific information needs and the SFCs for IASMS, utilizing a structure of 16 information classes to organize requirements. For each of the risks identified in the workshops, it was postulated what data sources would be necessary to monitor critical aspects of the risk (eg, surrounding air traffic, ground population, terrain, etc). to be directly measured as well as data that would be derived, which implies additional SFCs for different actors to understand what information would likely be exchanged between parties. For an IASMS to be effective, additional research is needed to develop the advanced algorithms that can address the increasingly autonomous and complex operations in differing environments and to develop means of identifying unknown risks. Looking at these scenarios highlighted a number of research issues. These include the ability to quickly "cordon off" airspace thru temporary flight restrictions (TFRs) or other means, developing clear definitions to enable automation-based algorithms for prioritizing operations, defining airspace density metrics, standardization of altitude reporting, and establishing a basis for safety data metrics definition and collection. This paper seeks to outline the development of an IASMS in the context of the DMFR scenarios and resulting demonstrations. Utilizing this contextual approach, NASA will generate recommendations for an assured safety framework for AAM operations that enables AAM operations to safely access the NAS.

In Time Aviation Safety Management System↗
DOE OSTI2023

Confidence Calibration Metrics

This technical report serves to summarize a literature search conducted that covered confidence calibration. This report is meant to serve as a solid starting reference for individuals interested in learning more about the confidence calibration domain as well as for individuals more familiar with this work – as a summarizing document for calibration metrics is notably lacking in the literature. This report is not meant to serve as a comprehensive review of everything that has been done in this field – in fact, the reader is encouraged to look further into this domain. We describe confidence and calibration and discuss properties of good calibration metrics. We detail various calibration and calibration-tangential metrics, presenting equations, algorithms, parameters, and an analysis of strengths and weaknesses. We apply a subset of these metrics to eight proxy confidence assessment datasets. We examine the various metrics in the context of model confidence. Finally, we discuss promising future directions and outstanding questions.

99 GENERAL AND MISCELLANEOUS↗
NASA NTRS2009

Implementation of Radiation, Ablation, and Free Energy Minimization Modules for Coupled Simulations of Hypersonic Flow

A description of models and boundary conditions required for coupling radiation and ablation physics to a hypersonic flow simulation is provided. Chemical equilibrium routines for varying elemental mass fraction are required in the flow solver to integrate with the equilibrium chemistry assumption employed in the ablation models. The capability also enables an equilibrium catalytic wall boundary condition in the non-ablating case. The paper focuses on numerical implementation issues using FIRE II, Mars return, and Apollo 4 applications to provide context for discussion. Variable relaxation factors applied to the Jacobian elements of partial equilibrium relations required for convergence are defined. Challenges of strong radiation coupling in a shock capturing algorithm are addressed. Results are presented to show how the current suite of models responds to a wide variety of conditions involving coupled radiation and ablation.

Gnoffo, Peter A.↗
NASA NTRSDate not supplied

Nearest-Neighbor Machine Learning Feature Selection for Interpretation of Microbial Molecular Signatures from Isotope Ratio Mass Spectrometry Data

Mass spectrometry (MS) promises to be a powerful tool for potential biosignature detection during astrobiological missions on ocean worlds in our solar system. Accurate and generalizable machine learning methods could enhance science return on investment by predicting seawater chemistry and classifying isotopic biosignatures, either as a signature consistent with microbial life (biotic) or as a novelty (unclassified/unique). However, machine learning models are likely to be complex and involve interactions between MS features, making biosignatures difficult to interpret. Feature selection methods provide biological and chemical context that help interpret the mechanisms of machine learning models, but these methods also need the ability to detect complex interactions. Previously, we developed a machine learning feature selection algorithm called nearest-neighbor projected distance regression (NPDR) that has the ability to identify important model features that involve complex interactions and automatically reduce correlation and the dimensionality in a high-dimensional variable space. The standard distance metrics used in NPDR – Manhattan and Euclidean – assume the multivariate data are isotropic, which is often violated in real data due to differences in the covariance between variables. Thus, we extend NPDR to include a random forest distance, and other anisotropic distance metrics, for computing nearest neighbors. We also augment the isotope-ratio MS data with time-series features from the raw MS signal to improve biotic classification. We test NPDR on our novel experimental ocean world seawater analog MS data. We measure isotope fractionations of volatile CO 2 that could be measured in exospheres or plumes. Samples include baseline abiotic conditions using a range of possible seawater chemistry consistent with Europa and Enceladus, and biotic samples that include microbes in these seawaters. We use penalized NPDR with random forest proximity to identify interpretable microbial molecular signatures. We compare features with random forest importance, and we train a classifier that discriminates between biotic and abiotic samples with high accuracy. These ML-trained ocean-world analog MS data could be used to assist in identifying biosignatures during future missions.

geochemistry↗
DOE OSTI2021

Blowing Snow at McMurdo Station, Antarctica During the AWARE Field Campaign: Surface and Ceilometer Observations

Blowing snow (BLSN) is an impactful process in cold climates, affecting regional thermodynamics, radiation properties, and the surface mass balance of snow. Though it has significant climatic impacts, the process is still poorly understood and not widely included in weather and climate models. In 2016, the AWARE Field Campaign saw the deployment of a large suite of in situ and remote sensing instruments to McMurdo Station, Antarctica allowing for investigation of BLSN. A ceilometer–based BLSN detection algorithm used elsewhere in Antarctica is applied to data from AWARE, yielding a BLSN frequency of 14.1% compared to 8.2% as detected by human observers. To increase confidence in detections, the algorithm is updated to have shorter temporal averaging and to include a variety of meteorological thresholds to limit false detections due to fog. Efforts to incorporate a laser disdrometer into the algorithm were unsuccessful. An unphysical dependence of particle size distributions on wind speed is found suggesting observations are problematic at wind speeds greater than 10 m s –1 . The revised algorithm detected a BLSN frequency of 7.4%, increasing agreement with human observations and confidence that the process is actively occurring at the observation site. Furthermore, these observations are put into context of a climatology of human observations of BLSN at McMurdo station from 2002–2018. An annual average of 8.0%–14.0% is estimated, with a total annual range of 3.4%–21.3%. Regardless of whether BLSN is observed by humans or instrument, the majority of cases at this location are associated with ongoing precipitation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Bayesian optimization of the beam injection process into a storage ring

We have evaluated the data-efficient Bayesian optimization method for the specific task of injection tuning in a circular accelerator. In this paper, we describe the implementation of this method at the Karlsruhe Research Accelerator with up to nine tuning parameters, including the determination of the associated hyperparameters. We show that the Bayesian optimization method outperforms manual tuning and the commonly used Nelder-Mead optimization algorithm in both simulation and experiment. The algorithm was also successfully used to ease the commissioning phase after the installation of new injection magnets and is regularly used during accelerator operations. We demonstrate that the introduction of context variables that include intrabunch scattering effects, such as the Touschek effect, further improves the control and robustness of the injection process.

43 PARTICLE ACCELERATORS↗
DOE OSTI2025

Visualizing Temporal Topic Embeddings with a Compass

—Dynamic topic modeling is useful at discovering the development and change in latent topics over time. However, present methodology relies on algorithms that separate document and word representations. This prevents the creation of a meaningful embedding space where changes in word usage and documents can be directly analyzed in a temporal context. This paper proposes an expansion of the compass-aligned temporal Word2Vec methodology into dynamic topic modeling. Such a method allows for the direct comparison of word and document embeddings across time in dynamic topics. This enables the creation of visualizations that incorporate temporal word embeddings within the context of documents into topic visualizations. In experiments against the current state-of-the-art, our proposed method demonstrates overall competitive performance in topic relevancy and diversity across temporal datasets of varying size. Simultaneously, it provides insightful visualizations focused on temporal word embeddings while maintaining the insights provided by global topic evolution, advancing our understanding of how topics evolve over time.

Cluster analysis↗
NASA NTRS1983

Effects of preprocessing Landsat MSS data on derived features

Important to the use of multitemporal Landsat MSS data for earth resources monitoring, such as agricultural inventories, is the ability to minimize the effects of varying atmospheric and satellite viewing conditions, while extracting physically meaningful features from the data. In general, the approaches to the preprocessing problem have been derived from either physical or statistical models. This paper compares three proposed algorithms; XSTAR haze correction, Color Normalization, and Multiple Acquisition Mean Level Adjustment. These techniques represent physical, statistical, and hybrid physical-statistical models, respectively. The comparisons are made in the context of three feature extraction techniques; the Tasseled Cap, the Cate Color Cube. and Normalized Difference.

Parris, T. M.↗
NASA NTRS1994

Methodologies and systems for heterogeneous concurrent computing

Heterogeneous concurrent computing is gaining increasing acceptance as an alternative or complementary paradigm to multiprocessor-based parallel processing as well as to conventional supercomputing. While algorithmic and programming aspects of heterogeneous concurrent computing are similar to their parallel processing counterparts, system issues, partitioning and scheduling, and performance aspects are significantly different. In this paper, we discuss critical design and implementation issues in heterogeneous concurrent computing, and describe techniques for enhancing its effectiveness. In particular, we highlight the system level infrastructures that are required, aspects of parallel algorithm development that most affect performance, system capabilities and limitations, and tools and methodologies for effective computing in heterogeneous networked environments. We also present recent developments and experiences in the context of the PVM system and comment on ongoing and future work.

Sunderam, V. S.↗
NASA NTRS2004

Contributions of Spherical Harmonics to Magnetic and Gravitational Fields

Gravitational forces are of cardinal importance in the dynamics of spacecraft; magnetic attractions sometime play a significant role also, as was the case with the Long Duration Exposure Facility, and as is now true for the first segment of Space Station Freedom. Both satellites depend on gravitational moment and a device known as a magnetic damper to stabilize their orientation. Magnetic fields are mathematically similar to gravitational fields in one important respect: each can be regarded as a gradient of a potential function that, in turn, can be described as an infinite series of spherical harmonics. Consequently, the two fields can be computed, in part, with quantities that need only be evaluated once, resulting in a savings of time when both fields are needed. The objective of this material is to present magnetic field and gravitational force expressions, and point out the terms that belong to both this is accomplished in Section 1 and 2. Section 3 contains the deductive reasoning with which one obtains the expressions of interest. Finally, examples in Section 4 show these equations can be used to reproduce others that arise in connection with special cases such as the magnetic field produced by a tilted dipole, and gravitational force exerted by an oblate spheroid. The mathematics are discussed in the context of terrestrial fields; however, by substituting appropriate constants, the results can be made applicable to fields belonging to other celestial bodies. The expressions presented here share the characteristics of algorithms set forth for computing gravitational force. In particular, computation is performed speedily by means of recursion formulae, and the expressions do not suffer from the shortcoming of a singularity when evaluated at points that lie on the polar axis.

Roithmayr, Carlos M.↗
NASA NTRS2020

Robustness Computation of Dynamic Controllability in Probabilistic Temporal Networks with Ordinary Distributions

Most existing works in Probabilistic Simple Temporal Networks (PSTNs) base their frameworks on well-defined probability distributions. This paper addresses on PSTN Dynamic Controllability (DC) robustness measure, i.e. the execution success probability of a network under dynamic control.We consider PSTNs where the probability distributions of the contingent edges are ordinary distributed (e.g. non-parametric, non-symmetric). We introduce the concepts of dispatching protocol (DP) as well as DP-robustness, the probability of success under a predefined dynamic policy.We propose a fixed-parameter pseudo-polynomial time algorithm to compute the exact DP-robustness of any PSTN under \textit{NextFirst} protocol, and apply to various PSTN datasets, including the real case of planetary exploration in the context of the Mars 2020 rover, and propose an original structural analysis.

Saint-Guillain, Michael↗
DOE OSTI2020

How analytic choices can affect the extraction of electromagnetic form factors from elastic electron scattering cross section data

Scientists often try to incorporate prior knowledge into their regression algorithms, such as a particular analytic behavior or a known value at a kinematic endpoint. Unfortunately, there is often no unique way to make use of this prior knowledge, and thus, different analytic choices can lead to very different regression results from the same set of data. In this paper, to illustrate this point in the context of the proton electromagnetic form factors, we use the Mainz elastic data with its 1422 cross section points and 31 normalization parameters. Starting with a complex unbound non-linear regression, we will show how the addition of a single theory-motivated constraint removes an oscillation from the magnetic form factor and shifts the extracted proton charge radius. We then repeat both regressions using the same algorithm, but with a rebinned version of the Mainz dataset. These examples illustrate how analytic choices, such as the function that is being used or even the binning of the data, can dramatically affect the results of a complex regression. These results also demonstrate why it is critical when using regression algorithms to have either a physical model in mind or a firm mathematical basis

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica

Abstract Genome-wide functional genetic screens have been successful in discovering genotype-phenotype relationships and in engineering new phenotypes. While broadly applied in mammalian cell lines and in E. coli , use in non-conventional microorganisms has been limited, in part, due to the inability to accurately design high activity CRISPR guides in such species. Here, we develop an experimental-computational approach to sgRNA design that is specific to an organism of choice, in this case the oleaginous yeast Yarrowia lipolytica . A negative selection screen in the absence of non-homologous end-joining, the dominant DNA repair mechanism, was used to generate single guide RNA (sgRNA) activity profiles for both SpCas9 and LbCas12a. This genome-wide data served as input to a deep learning algorithm, DeepGuide, that is able to accurately predict guide activity. DeepGuide uses unsupervised learning to obtain a compressed representation of the genome, followed by supervised learning to map sgRNA sequence, genomic context, and epigenetic features with guide activity. Experimental validation, both genome-wide and with a subset of selected genes, confirms DeepGuide’s ability to accurately predict high activity sgRNAs. DeepGuide provides an organism specific predictor of CRISPR guide activity that with retraining could be applied to other fungal species, prokaryotes, and other non-conventional organisms.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1989

Sensitivity analysis of complex coupled systems extended to second and higher order derivatives

In design of engineering systems, the what if questions often arise such as: what will be the change of the aircraft payload, if the wing aspect ratio is incremented by 10 percent. Answers to such questions are commonly sought by incrementing the pertinent variable, and reevaluating the major disciplinary analyses involved. These analyses are contributed by engineering disciplines that are, usually, coupled, as are the aerodynamics, structures, and performance in the context of the question above. The what if questions can be answered precisely by computation of the derivatives. A method for calculation of the first derivatives has been developed previously. An algorithm is presented for calculation of the second and higher order derivatives.

Sobieszczanski-Sobieski, Jaroslaw↗